RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 HIC2Q96JB3 615 aa11.82□□□□□ -0.52
CUX1-210ENST00000497815 FCRL3Q96P31 734 aaPredicted RBP11.82□□□□□ -0.52
CUX1-210ENST00000497815 EBNA1BP2Q99848 306 aaKnown RBP11.82□□□□□ -0.52
CUX1-210ENST00000497815 WDR83Q9BRX9 315 aaKnown RBP11.82□□□□□ -0.52
CUX1-210ENST00000497815 MRM3Q9HC36 420 aaKnown RBP11.82□□□□□ -0.52
CUX1-210ENST00000497815 PHPT1Q9NRX4 125 aaPredicted RBP11.82□□□□□ -0.52
CUX1-210ENST00000497815 TREX1Q9NSU2 369 aa11.82□□□□□ -0.52
CUX1-210ENST00000497815 IL1RAPL1Q9NZN1 696 aa11.82□□□□□ -0.52
CUX1-210ENST00000497815 ZC3H7BQ9UGR2 993 aaKnown RBP11.82□□□□□ -0.52
CUX1-210ENST00000497815 CRLS1Q9UJA2 301 aa11.82□□□□□ -0.52
CUX1-210ENST00000497815 NFU1Q9UMS0 254 aa11.82□□□□□ -0.52
CUX1-210ENST00000497815 SLC6A14Q9UN76 642 aa11.82□□□□□ -0.52
CUX1-210ENST00000497815 ANKRD6Q9Y2G4 727 aa11.82□□□□□ -0.52
CUX1-210ENST00000497815 FANCMQ8IYD8 2048 aa11.82□□□□□ -0.52
CUX1-210ENST00000497815 GOLGA8KD6RF30 607 aa11.81□□□□□ -0.52
CUX1-210ENST00000497815 GOLGA8TH3BQL2 631 aa11.81□□□□□ -0.52
CUX1-210ENST00000497815 KHNYNO15037 678 aaKnown RBP11.81□□□□□ -0.52
CUX1-210ENST00000497815 MTX2O75431 263 aa11.81□□□□□ -0.52
CUX1-210ENST00000497815 SLC25A14O95258 325 aaPredicted RBP11.81□□□□□ -0.52
CUX1-210ENST00000497815 VAPBO95292 243 aa11.81□□□□□ -0.52
CUX1-210ENST00000497815 ASMTLO95671 621 aa11.81□□□□□ -0.52
CUX1-210ENST00000497815 PYGLP06737 847 aa11.81□□□□□ -0.52
CUX1-210ENST00000497815 POLBP06746 335 aa11.81□□□□□ -0.52
CUX1-210ENST00000497815 MYCLP1P12525 358 aaPredicted RBP11.81□□□□□ -0.52
CUX1-210ENST00000497815 ITGALP20701 1170 aa11.81□□□□□ -0.52
CUX1-210ENST00000497815 HTR1BP28222 390 aa11.81□□□□□ -0.52
CUX1-210ENST00000497815 TRIM23P36406 574 aa11.81□□□□□ -0.52
CUX1-210ENST00000497815 POLD2P49005 469 aa11.81□□□□□ -0.52
CUX1-210ENST00000497815 CDKN1CP49918 316 aaPredicted RBP11.81□□□□□ -0.52
CUX1-210ENST00000497815 NXPH1P58417 271 aa11.81□□□□□ -0.52
CUX1-210ENST00000497815 YPEL5P62699 121 aa11.81□□□□□ -0.52
CUX1-210ENST00000497815 ACVR1Q04771 509 aa11.81□□□□□ -0.52
CUX1-210ENST00000497815 NFATC2Q13469 925 aa11.81□□□□□ -0.52
CUX1-210ENST00000497815 CUL1Q13616 776 aa11.81□□□□□ -0.52
CUX1-210ENST00000497815 ITGA9Q13797 1035 aa11.81□□□□□ -0.52
CUX1-210ENST00000497815 NFATC4Q14934 902 aa11.81□□□□□ -0.52
CUX1-210ENST00000497815 KIF19Q2TAC6 998 aa11.81□□□□□ -0.52
CUX1-210ENST00000497815 ZNF542PQ5EBM4 170 aa11.81□□□□□ -0.52
CUX1-210ENST00000497815 PRAMEF14Q5SWL7 426 aa11.81□□□□□ -0.52
CUX1-210ENST00000497815 AFTPHQ6ULP2 937 aa11.81□□□□□ -0.52
CUX1-210ENST00000497815 ENPP7Q6UWV6 458 aa11.81□□□□□ -0.52
CUX1-210ENST00000497815 MARK2Q7KZI7 788 aaKnown RBP11.81□□□□□ -0.52
CUX1-210ENST00000497815 TAS2R42Q7RTR8 314 aa11.81□□□□□ -0.52
CUX1-210ENST00000497815 RD3Q7Z3Z2 195 aa11.81□□□□□ -0.52
CUX1-210ENST00000497815 RABEPKQ7Z6M1 372 aa11.81□□□□□ -0.52
CUX1-210ENST00000497815 IQCHQ86VS3 1027 aa11.81□□□□□ -0.52
CUX1-210ENST00000497815 NLRP8Q86W28 1048 aa11.81□□□□□ -0.52
CUX1-210ENST00000497815 SPATS2Q86XZ4 545 aaKnown RBP11.81□□□□□ -0.52
CUX1-210ENST00000497815 GSPT2Q8IYD1 628 aaKnown RBP11.81□□□□□ -0.52
CUX1-210ENST00000497815 DCLK2Q8N568 766 aa11.81□□□□□ -0.52
CUX1-210ENST00000497815 OTUD6BQ8N6M0 293 aa11.81□□□□□ -0.52
CUX1-210ENST00000497815 PNPLA1Q8N8W4 532 aa11.81□□□□□ -0.52
CUX1-210ENST00000497815 UBXN4Q92575 508 aa11.81□□□□□ -0.52
CUX1-210ENST00000497815 GLYATL1Q969I3 302 aa11.81□□□□□ -0.52
CUX1-210ENST00000497815 NUSAP1Q9BXS6 441 aaKnown RBP11.81□□□□□ -0.52
CUX1-210ENST00000497815 TEX101Q9BY14 249 aa11.81□□□□□ -0.52
CUX1-210ENST00000497815 MTRF1LQ9UGC7 380 aaKnown RBP11.81□□□□□ -0.52
CUX1-210ENST00000497815 MOSPD1Q9UJG1 213 aa11.81□□□□□ -0.52
CUX1-210ENST00000497815 TMPRSS11EQ9UL52 423 aa11.81□□□□□ -0.52
CUX1-210ENST00000497815 RIMKLBQ9ULI2 386 aa11.81□□□□□ -0.52
CUX1-210ENST00000497815 CNOT6Q9ULM6 557 aaKnown RBP11.81□□□□□ -0.52
CUX1-210ENST00000497815 TMEM98Q9Y2Y6 226 aa11.81□□□□□ -0.52
CUX1-210ENST00000497815 SNX11Q9Y5W9 270 aa11.81□□□□□ -0.52
CUX1-210ENST00000497815 TEX264Q9Y6I9 313 aa11.81□□□□□ -0.52
CUX1-210ENST00000497815 OAS3Q9Y6K5 1087 aaKnown RBP11.81□□□□□ -0.52
CUX1-210ENST00000497815 SCN8AQ9UQD0 1980 aa11.81□□□□□ -0.52
CUX1-210ENST00000497815 TRPM6Q9BX84 2022 aa11.81□□□□□ -0.52
CUX1-210ENST00000497815 TMEM202A6NGA9 273 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 E7ESA3 106 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 H7C0S8 307 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 SCAMP1O15126 338 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 MAGEC1O60732 1142 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 USP1O94782 785 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 PAMP19021 973 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 PSMA3P25788 255 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 TEAD1P28347 426 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 ECHS1P30084 290 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 KIAA1024LP59773 190 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 IRX4P78413 519 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 BNC1Q01954 994 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 CACNG1Q06432 222 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 OVGP1Q12889 678 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 GRIK2Q13002 908 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 PTK2BQ14289 1009 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 FZD2Q14332 565 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 CRYMQ14894 314 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 SF3A2Q15428 464 aaKnown RBP11.8□□□□□ -0.52
CUX1-210ENST00000497815 ERCC6LQ2NKX8 1250 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 FASTKD1Q53R41 847 aaKnown RBP11.8□□□□□ -0.52
CUX1-210ENST00000497815 PLA2G2CQ5R387 149 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 GPRC6AQ5T6X5 926 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 PDPK2PQ6A1A2 396 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 PSAPL1Q6NUJ1 521 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 SLC23A3Q6PIS1 610 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 UNC5AQ6ZN44 842 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 SNX20Q7Z614 316 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 TMEM135Q86UB9 458 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 PHYKPLQ8IUZ5 450 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 PALM2Q8IXS6 379 aa11.8□□□□□ -0.52
CUX1-210ENST00000497815 UNC5BQ8IZJ1 945 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms