RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 SERPINI1Q99574 410 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 KLHL42Q9P2K6 505 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 CCL26Q9Y258 94 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 CAPN7Q9Y6W3 813 aa8.33□□□□□ -1.08
USP54-215ENST00000497106 SNX3O60493 162 aa8.32□□□□□ -1.08
USP54-215ENST00000497106 GMNNO75496 209 aa8.32□□□□□ -1.08
USP54-215ENST00000497106 KITP10721 976 aa8.32□□□□□ -1.08
USP54-215ENST00000497106 ITGB7P26010 798 aa8.32□□□□□ -1.08
USP54-215ENST00000497106 SLC8A1P32418 973 aa8.32□□□□□ -1.08
USP54-215ENST00000497106 CCR2P41597 374 aa8.32□□□□□ -1.08
USP54-215ENST00000497106 TAS2R39P59534 338 aa8.32□□□□□ -1.08
USP54-215ENST00000497106 ADAM15Q13444 863 aa8.32□□□□□ -1.08
USP54-215ENST00000497106 RCN2Q14257 317 aa8.32□□□□□ -1.08
USP54-215ENST00000497106 IMPG1Q17R60 797 aa8.32□□□□□ -1.08
USP54-215ENST00000497106 LRRC66Q68CR7 880 aa8.32□□□□□ -1.08
USP54-215ENST00000497106 ERN2Q76MJ5 926 aaKnown RBP8.32□□□□□ -1.08
USP54-215ENST00000497106 KBTBD6Q86V97 674 aa8.32□□□□□ -1.08
USP54-215ENST00000497106 RALGPS2Q86X27 583 aaPredicted RBP8.32□□□□□ -1.08
USP54-215ENST00000497106 PGBD5Q8N414 524 aa8.32□□□□□ -1.08
USP54-215ENST00000497106 ZNF513Q8N8E2 541 aaPredicted RBP8.32□□□□□ -1.08
USP54-215ENST00000497106 SLC17A7Q9P2U7 560 aa8.32□□□□□ -1.08
USP54-215ENST00000497106 HTRA2O43464 458 aaPredicted RBP8.32□□□□□ -1.08
USP54-215ENST00000497106 IPO13O94829 963 aaKnown RBP8.32□□□□□ -1.08
USP54-215ENST00000497106 MYO1DO94832 1006 aa8.32□□□□□ -1.08
USP54-215ENST00000497106 C8GP07360 202 aa8.32□□□□□ -1.08
USP54-215ENST00000497106 HNF1BP35680 557 aa8.32□□□□□ -1.08
USP54-215ENST00000497106 STK19P49842 368 aaPredicted RBP8.32□□□□□ -1.08
USP54-215ENST00000497106 SLC5A9Q2M3M2 681 aa8.32□□□□□ -1.08
USP54-215ENST00000497106 DPPA4Q7L190 304 aa8.32□□□□□ -1.08
USP54-215ENST00000497106 PIWIL2Q8TC59 973 aaKnown RBP8.32□□□□□ -1.08
USP54-215ENST00000497106 ELMO1Q92556 727 aa8.32□□□□□ -1.08
USP54-215ENST00000497106 KLHL29Q96CT2 875 aa8.32□□□□□ -1.08
USP54-215ENST00000497106 LINGO1Q96FE5 620 aa8.32□□□□□ -1.08
USP54-215ENST00000497106 CCT7Q99832 543 aa8.32□□□□□ -1.08
USP54-215ENST00000497106 B4GALT6Q9UBX8 382 aa8.32□□□□□ -1.08
USP54-215ENST00000497106 MYO16Q9Y6X6 1858 aa8.32□□□□□ -1.08
USP54-215ENST00000497106 CACNB4O00305 520 aaPredicted RBP8.32□□□□□ -1.08
USP54-215ENST00000497106 LDB2O43679 373 aa8.32□□□□□ -1.08
USP54-215ENST00000497106 LEFTY1O75610 366 aa8.32□□□□□ -1.08
USP54-215ENST00000497106 RFPL1O75677 317 aa8.32□□□□□ -1.08
USP54-215ENST00000497106 PEX11BO96011 259 aa8.32□□□□□ -1.08
USP54-215ENST00000497106 LAMP2P13473 410 aa8.32□□□□□ -1.08
USP54-215ENST00000497106 C5AR1P21730 350 aa8.32□□□□□ -1.08
USP54-215ENST00000497106 RPL14P50914 215 aaKnown RBP8.32□□□□□ -1.08
USP54-215ENST00000497106 KCTD19Q17RG1 926 aaPredicted RBP8.32□□□□□ -1.08
USP54-215ENST00000497106 DENND5AQ6IQ26 1287 aa8.32□□□□□ -1.08
USP54-215ENST00000497106 CNSTQ6PJW8 725 aa8.32□□□□□ -1.08
USP54-215ENST00000497106 LPCAT2Q7L5N7 544 aa8.32□□□□□ -1.08
USP54-215ENST00000497106 SKA1Q96BD8 255 aa8.32□□□□□ -1.08
USP54-215ENST00000497106 DERL2Q9GZP9 239 aa8.32□□□□□ -1.08
USP54-215ENST00000497106 ALG9Q9H6U8 611 aa8.32□□□□□ -1.08
USP54-215ENST00000497106 NMRK1Q9NWW6 199 aa8.32□□□□□ -1.08
USP54-215ENST00000497106 UTP6Q9NYH9 597 aaKnown RBP8.32□□□□□ -1.08
USP54-215ENST00000497106 ZNF212Q9UDV6 495 aa8.32□□□□□ -1.08
USP54-215ENST00000497106 LNPEPQ9UIQ6 1025 aa8.32□□□□□ -1.08
USP54-215ENST00000497106 H7C0S8 307 aa8.31□□□□□ -1.08
USP54-215ENST00000497106 UGT1A9O60656 530 aa8.31□□□□□ -1.08
USP54-215ENST00000497106 TM7SF2O76062 418 aa8.31□□□□□ -1.08
USP54-215ENST00000497106 SLC25A14O95258 325 aaPredicted RBP8.31□□□□□ -1.08
USP54-215ENST00000497106 PROCP04070 461 aa8.31□□□□□ -1.08
USP54-215ENST00000497106 ENO2P09104 434 aaPredicted RBP8.31□□□□□ -1.08
USP54-215ENST00000497106 ALPIP09923 528 aa8.31□□□□□ -1.08
USP54-215ENST00000497106 ARSAP15289 507 aa8.31□□□□□ -1.08
USP54-215ENST00000497106 ACVR1Q04771 509 aa8.31□□□□□ -1.08
USP54-215ENST00000497106 BST1Q10588 318 aa8.31□□□□□ -1.08
USP54-215ENST00000497106 HYAL1Q12794 435 aa8.31□□□□□ -1.08
USP54-215ENST00000497106 OLIG2Q13516 323 aa8.31□□□□□ -1.08
USP54-215ENST00000497106 MMEL1Q495T6 779 aa8.31□□□□□ -1.08
USP54-215ENST00000497106 YTHDF3Q7Z739 585 aaKnown RBP8.31□□□□□ -1.08
USP54-215ENST00000497106 MYLK4Q86YV6 388 aaPredicted RBP8.31□□□□□ -1.08
USP54-215ENST00000497106 NXPE1Q8N323 547 aa8.31□□□□□ -1.08
USP54-215ENST00000497106 SNX31Q8N9S9 440 aa8.31□□□□□ -1.08
USP54-215ENST00000497106 STMN2Q93045 179 aa8.31□□□□□ -1.08
USP54-215ENST00000497106 CMTM5Q96DZ9 223 aa8.31□□□□□ -1.08
USP54-215ENST00000497106 SGF29Q96ES7 293 aa8.31□□□□□ -1.08
USP54-215ENST00000497106 CAB39LQ9H9S4 337 aa8.31□□□□□ -1.08
USP54-215ENST00000497106 UGT1A7Q9HAW7 530 aa8.31□□□□□ -1.08
USP54-215ENST00000497106 UGT1A10Q9HAW8 530 aa8.31□□□□□ -1.08
USP54-215ENST00000497106 UGT1A8Q9HAW9 530 aa8.31□□□□□ -1.08
USP54-215ENST00000497106 IL17CQ9P0M4 197 aa8.31□□□□□ -1.08
USP54-215ENST00000497106 TTC24A2A3L6 582 aaPredicted RBP8.31□□□□□ -1.08
USP54-215ENST00000497106 MAPK1P28482 360 aa8.31□□□□□ -1.08
USP54-215ENST00000497106 CDC16Q13042 620 aa8.31□□□□□ -1.08
USP54-215ENST00000497106 SP140Q13342 867 aa8.31□□□□□ -1.08
USP54-215ENST00000497106 SMAD4Q13485 552 aaKnown RBP8.31□□□□□ -1.08
USP54-215ENST00000497106 HIST2H2ACQ16777 129 aaPredicted RBP8.31□□□□□ -1.08
USP54-215ENST00000497106 DNAL1Q4LDG9 190 aa8.31□□□□□ -1.08
USP54-215ENST00000497106 HIST2H2AA3Q6FI13 130 aa8.31□□□□□ -1.08
USP54-215ENST00000497106 C16orf46Q6P387 395 aa8.31□□□□□ -1.08
USP54-215ENST00000497106 ZNF765Q7L2R6 523 aa8.31□□□□□ -1.08
USP54-215ENST00000497106 CHCHD4Q8N4Q1 142 aa8.31□□□□□ -1.08
USP54-215ENST00000497106 BEND7Q8N7W2 519 aaPredicted RBP8.31□□□□□ -1.08
USP54-215ENST00000497106 ISL2Q96A47 359 aa8.31□□□□□ -1.08
USP54-215ENST00000497106 LYSMD1Q96S90 227 aa8.31□□□□□ -1.08
USP54-215ENST00000497106 GPR21Q99679 349 aa8.31□□□□□ -1.08
USP54-215ENST00000497106 TMEM120AQ9BXJ8 343 aa8.31□□□□□ -1.08
USP54-215ENST00000497106 FIS1Q9Y3D6 152 aa8.31□□□□□ -1.08
USP54-215ENST00000497106 SCN5AQ14524 2016 aa8.31□□□□□ -1.08
USP54-215ENST00000497106 FNDC1Q4ZHG4 1894 aaPredicted RBP8.31□□□□□ -1.08
USP54-215ENST00000497106 CLDN7O95471 211 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms