RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 GALNT3Q14435 633 aa12.64□□□□□ -0.39
PTPRF-214ENST00000496043 SPA17Q15506 151 aa12.64□□□□□ -0.39
PTPRF-214ENST00000496043 SLC14A2Q15849 920 aa12.64□□□□□ -0.39
PTPRF-214ENST00000496043 PCSK7Q16549 785 aa12.64□□□□□ -0.39
PTPRF-214ENST00000496043 TAZQ16635 292 aa12.64□□□□□ -0.39
PTPRF-214ENST00000496043 MAP9Q49MG5 647 aa12.64□□□□□ -0.39
PTPRF-214ENST00000496043 HENMT1Q5T8I9 393 aaKnown RBP12.64□□□□□ -0.39
PTPRF-214ENST00000496043 KAZNQ674X7 775 aa12.64□□□□□ -0.39
PTPRF-214ENST00000496043 B4GALNT4Q76KP1 1039 aa12.64□□□□□ -0.39
PTPRF-214ENST00000496043 CHST15Q7LFX5 561 aaPredicted RBP12.64□□□□□ -0.39
PTPRF-214ENST00000496043 TMC3Q7Z5M5 1100 aa12.64□□□□□ -0.39
PTPRF-214ENST00000496043 SLITRK4Q8IW52 837 aa12.64□□□□□ -0.39
PTPRF-214ENST00000496043 TC2NQ8N9U0 490 aa12.64□□□□□ -0.39
PTPRF-214ENST00000496043 TFB1MQ8WVM0 346 aaKnown RBP12.64□□□□□ -0.39
PTPRF-214ENST00000496043 PATE1Q8WXA2 126 aa12.64□□□□□ -0.39
PTPRF-214ENST00000496043 SLC39A7Q92504 469 aa12.64□□□□□ -0.39
PTPRF-214ENST00000496043 TADA1Q96BN2 335 aa12.64□□□□□ -0.39
PTPRF-214ENST00000496043 TEKT5Q96M29 485 aa12.64□□□□□ -0.39
PTPRF-214ENST00000496043 TRIB3Q96RU7 358 aa12.64□□□□□ -0.39
PTPRF-214ENST00000496043 DPYSL5Q9BPU6 564 aa12.64□□□□□ -0.39
PTPRF-214ENST00000496043 SPATA16Q9BXB7 569 aa12.64□□□□□ -0.39
PTPRF-214ENST00000496043 GPR63Q9BZJ6 419 aa12.64□□□□□ -0.39
PTPRF-214ENST00000496043 SEMA6CQ9H3T2 930 aa12.64□□□□□ -0.39
PTPRF-214ENST00000496043 RDH14Q9HBH5 336 aa12.64□□□□□ -0.39
PTPRF-214ENST00000496043 LUC7LQ9NQ29 371 aaKnown RBP12.64□□□□□ -0.39
PTPRF-214ENST00000496043 SAE1Q9UBE0 346 aaPredicted RBP12.64□□□□□ -0.39
PTPRF-214ENST00000496043 SHOC2Q9UQ13 582 aa12.64□□□□□ -0.39
PTPRF-214ENST00000496043 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.64□□□□□ -0.39
PTPRF-214ENST00000496043 PCDHA13Q9Y5I0 950 aa12.64□□□□□ -0.39
PTPRF-214ENST00000496043 OAS3Q9Y6K5 1087 aaKnown RBP12.64□□□□□ -0.39
PTPRF-214ENST00000496043 LRP4O75096 1905 aa12.64□□□□□ -0.39
PTPRF-214ENST00000496043 UNC13CQ8NB66 2214 aa12.64□□□□□ -0.39
PTPRF-214ENST00000496043 CELSR3Q9NYQ7 3312 aa12.64□□□□□ -0.39
PTPRF-214ENST00000496043 A0A0A6YYK5 440 aaPredicted RBP12.63□□□□□ -0.39
PTPRF-214ENST00000496043 FADS2P1A8MWK0 482 aa12.63□□□□□ -0.39
PTPRF-214ENST00000496043 AGRPO00253 132 aa12.63□□□□□ -0.39
PTPRF-214ENST00000496043 MTSS1O43312 755 aa12.63□□□□□ -0.39
PTPRF-214ENST00000496043 SLC25A14O95258 325 aaPredicted RBP12.63□□□□□ -0.39
PTPRF-214ENST00000496043 LCA5LO95447 670 aa12.63□□□□□ -0.39
PTPRF-214ENST00000496043 NDST3O95803 873 aa12.63□□□□□ -0.39
PTPRF-214ENST00000496043 CYLC1P35663 651 aaPredicted RBP12.63□□□□□ -0.39
PTPRF-214ENST00000496043 CLN3Q13286 438 aa12.63□□□□□ -0.39
PTPRF-214ENST00000496043 TRA2AQ13595 282 aaKnown RBP eCLIP12.63□□□□□ -0.39
PTPRF-214ENST00000496043 TFDP3Q5H9I0 405 aa12.63□□□□□ -0.39
PTPRF-214ENST00000496043 FAM182AQ5T1J6 154 aa12.63□□□□□ -0.39
PTPRF-214ENST00000496043 SPOCD1Q6ZMY3 1216 aa12.63□□□□□ -0.39
PTPRF-214ENST00000496043 ZNF574Q6ZN55 896 aaPredicted RBP12.63□□□□□ -0.39
PTPRF-214ENST00000496043 CCDC81Q6ZN84 652 aa12.63□□□□□ -0.39
PTPRF-214ENST00000496043 LYSMD3Q7Z3D4 306 aa12.63□□□□□ -0.39
PTPRF-214ENST00000496043 TMPRSS9Q7Z410 1059 aa12.63□□□□□ -0.39
PTPRF-214ENST00000496043 GPR26Q8NDV2 337 aa12.63□□□□□ -0.39
PTPRF-214ENST00000496043 SPATA22Q8NHS9 363 aa12.63□□□□□ -0.39
PTPRF-214ENST00000496043 P3H4Q92791 437 aa12.63□□□□□ -0.39
PTPRF-214ENST00000496043 USP7Q93009 1102 aa12.63□□□□□ -0.39
PTPRF-214ENST00000496043 EID2BQ96D98 161 aa12.63□□□□□ -0.39
PTPRF-214ENST00000496043 CCNL2Q96S94 520 aaPredicted RBP12.63□□□□□ -0.39
PTPRF-214ENST00000496043 SLC38A3Q99624 504 aa12.63□□□□□ -0.39
PTPRF-214ENST00000496043 CARD9Q9H257 536 aa12.63□□□□□ -0.39
PTPRF-214ENST00000496043 TRIM39Q9HCM9 518 aa12.63□□□□□ -0.39
PTPRF-214ENST00000496043 WDR70Q9NW82 654 aa12.63□□□□□ -0.39
PTPRF-214ENST00000496043 KCNK4Q9NYG8 393 aa12.63□□□□□ -0.39
PTPRF-214ENST00000496043 ACSL6Q9UKU0 697 aa12.63□□□□□ -0.39
PTPRF-214ENST00000496043 PRKAB1Q9Y478 270 aa12.63□□□□□ -0.39
PTPRF-214ENST00000496043 COL27A1Q8IZC6 1860 aaPredicted RBP12.62□□□□□ -0.39
PTPRF-214ENST00000496043 IGHV1OR21-1A0A087WYE8 117 aa12.62□□□□□ -0.39
PTPRF-214ENST00000496043 IGHV5-10-1A0A0J9YXX1 117 aa12.62□□□□□ -0.39
PTPRF-214ENST00000496043 K7ENP7 123 aa12.62□□□□□ -0.39
PTPRF-214ENST00000496043 ERVH48-1M5A8F1 160 aa12.62□□□□□ -0.39
PTPRF-214ENST00000496043 HGSO14964 777 aaPredicted RBP12.62□□□□□ -0.39
PTPRF-214ENST00000496043 GRID2O43424 1007 aa12.62□□□□□ -0.39
PTPRF-214ENST00000496043 NUAK1O60285 661 aa12.62□□□□□ -0.39
PTPRF-214ENST00000496043 PMPCBO75439 489 aa12.62□□□□□ -0.39
PTPRF-214ENST00000496043 MT-CYBP00156 380 aaPredicted RBP12.62□□□□□ -0.39
PTPRF-214ENST00000496043 PIRTP0C851 137 aa12.62□□□□□ -0.39
PTPRF-214ENST00000496043 SLC2A4P14672 509 aa12.62□□□□□ -0.39
PTPRF-214ENST00000496043 ITIH1P19827 911 aa12.62□□□□□ -0.39
PTPRF-214ENST00000496043 PTPN3P26045 913 aa12.62□□□□□ -0.39
PTPRF-214ENST00000496043 TNNT3P45378 269 aaPredicted RBP12.62□□□□□ -0.39
PTPRF-214ENST00000496043 LIMK2P53671 638 aa12.62□□□□□ -0.39
PTPRF-214ENST00000496043 MAPK10P53779 464 aa12.62□□□□□ -0.39
PTPRF-214ENST00000496043 GPLD1P80108 840 aa12.62□□□□□ -0.39
PTPRF-214ENST00000496043 C19orf57Q0VDD7 668 aa12.62□□□□□ -0.39
PTPRF-214ENST00000496043 PRKD1Q15139 912 aaPredicted RBP12.62□□□□□ -0.39
PTPRF-214ENST00000496043 LLGL1Q15334 1064 aa12.62□□□□□ -0.39
PTPRF-214ENST00000496043 TAF1BQ53T94 588 aaPredicted RBP12.62□□□□□ -0.39
PTPRF-214ENST00000496043 TMEM164Q5U3C3 297 aa12.62□□□□□ -0.39
PTPRF-214ENST00000496043 NKAIN2Q5VXU1 208 aa12.62□□□□□ -0.39
PTPRF-214ENST00000496043 PDPK2PQ6A1A2 396 aa12.62□□□□□ -0.39
PTPRF-214ENST00000496043 IYDQ6PHW0 289 aa12.62□□□□□ -0.39
PTPRF-214ENST00000496043 INO80CQ6PI98 192 aaPredicted RBP12.62□□□□□ -0.39
PTPRF-214ENST00000496043 PID1Q7Z2X4 250 aa12.62□□□□□ -0.39
PTPRF-214ENST00000496043 KATNAL2Q8IYT4 538 aa12.62□□□□□ -0.39
PTPRF-214ENST00000496043 SFRP1Q8N474 314 aa12.62□□□□□ -0.39
PTPRF-214ENST00000496043 TRAM1L1Q8N609 369 aa12.62□□□□□ -0.39
PTPRF-214ENST00000496043 OR4D9Q8NGE8 314 aa12.62□□□□□ -0.39
PTPRF-214ENST00000496043 SNRNP27Q8WVK2 155 aaKnown RBP12.62□□□□□ -0.39
PTPRF-214ENST00000496043 SH3KBP1Q96B97 665 aa12.62□□□□□ -0.39
PTPRF-214ENST00000496043 WBP1Q96G27 269 aa12.62□□□□□ -0.39
PTPRF-214ENST00000496043 AHCYL2Q96HN2 611 aaKnown RBP12.62□□□□□ -0.39
PTPRF-214ENST00000496043 RBM41Q96IZ5 413 aaKnown RBP12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms