RNA–Protein interactions for RNA: ENST00000495515.1

HDAC6-235, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 569 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-235ENST00000495515 ULK4Q96C45 1275 aa16.98■□□□□ 0.31
HDAC6-235ENST00000495515 CDKN2AIPNLQ96HQ2 116 aa16.98■□□□□ 0.31
HDAC6-235ENST00000495515 COX14Q96I36 57 aa16.98■□□□□ 0.31
HDAC6-235ENST00000495515 LRRC1Q9BTT6 524 aa16.98■□□□□ 0.31
HDAC6-235ENST00000495515 KIFC1Q9BW19 673 aa16.98■□□□□ 0.31
HDAC6-235ENST00000495515 CARD6Q9BX69 1037 aa16.98■□□□□ 0.31
HDAC6-235ENST00000495515 LGR4Q9BXB1 951 aa16.98■□□□□ 0.31
HDAC6-235ENST00000495515 SLC13A1Q9BZW2 595 aa16.98■□□□□ 0.31
HDAC6-235ENST00000495515 DPH5Q9H2P9 285 aa16.98■□□□□ 0.31
HDAC6-235ENST00000495515 ASB8Q9H765 288 aa16.98■□□□□ 0.31
HDAC6-235ENST00000495515 L2HGDHQ9H9P8 463 aa16.98■□□□□ 0.31
HDAC6-235ENST00000495515 CHRAC1Q9NRG0 131 aa16.98■□□□□ 0.31
HDAC6-235ENST00000495515 DNAAF2Q9NVR5 837 aaKnown RBP16.98■□□□□ 0.31
HDAC6-235ENST00000495515 SYBUQ9NX95 663 aa16.98■□□□□ 0.31
HDAC6-235ENST00000495515 PLXNA2O75051 1894 aa16.98■□□□□ 0.31
HDAC6-235ENST00000495515 EP300Q09472 2414 aaPredicted RBP16.98■□□□□ 0.31
HDAC6-235ENST00000495515 CCDC78A2IDD5 438 aa16.97■□□□□ 0.31
HDAC6-235ENST00000495515 ASMTLO95671 621 aa16.97■□□□□ 0.31
HDAC6-235ENST00000495515 CSF2P04141 144 aa16.97■□□□□ 0.31
HDAC6-235ENST00000495515 NME1P15531 152 aaKnown RBP16.97■□□□□ 0.31
HDAC6-235ENST00000495515 PAMP19021 973 aa16.97■□□□□ 0.31
HDAC6-235ENST00000495515 MC4RP32245 332 aa16.97■□□□□ 0.31
HDAC6-235ENST00000495515 MAGEA3P43357 314 aa16.97■□□□□ 0.31
HDAC6-235ENST00000495515 DRG2P55039 364 aaKnown RBP16.97■□□□□ 0.31
HDAC6-235ENST00000495515 ARL4CP56559 192 aa16.97■□□□□ 0.31
HDAC6-235ENST00000495515 SRP54P61011 504 aaKnown RBP16.97■□□□□ 0.31
HDAC6-235ENST00000495515 PRAMEP78395 509 aa16.97■□□□□ 0.31
HDAC6-235ENST00000495515 CRADDP78560 199 aa16.97■□□□□ 0.31
HDAC6-235ENST00000495515 GPR33Q49SQ1 333 aa16.97■□□□□ 0.31
HDAC6-235ENST00000495515 ATP13A5Q4VNC0 1218 aa16.97■□□□□ 0.31
HDAC6-235ENST00000495515 LDLRAP1Q5SW96 308 aa16.97■□□□□ 0.31
HDAC6-235ENST00000495515 TPRG1LQ5T0D9 272 aa16.97■□□□□ 0.31
HDAC6-235ENST00000495515 SNX20Q7Z614 316 aa16.97■□□□□ 0.31
HDAC6-235ENST00000495515 KIAA2013Q8IYS2 634 aa16.97■□□□□ 0.31
HDAC6-235ENST00000495515 TBRG4Q969Z0 631 aaKnown RBP eCLIP16.97■□□□□ 0.31
HDAC6-235ENST00000495515 NAT9Q9BTE0 207 aa16.97■□□□□ 0.31
HDAC6-235ENST00000495515 ZCCHC2Q9C0B9 1178 aaKnown RBP16.97■□□□□ 0.31
HDAC6-235ENST00000495515 SMOXQ9NWM0 555 aa16.97■□□□□ 0.31
HDAC6-235ENST00000495515 VPS18Q9P253 973 aa16.97■□□□□ 0.31
HDAC6-235ENST00000495515 CRLS1Q9UJA2 301 aa16.97■□□□□ 0.31
HDAC6-235ENST00000495515 MOSPD1Q9UJG1 213 aa16.97■□□□□ 0.31
HDAC6-235ENST00000495515 CNOT6Q9ULM6 557 aaKnown RBP16.97■□□□□ 0.31
HDAC6-235ENST00000495515 SOX13Q9UN79 622 aa16.97■□□□□ 0.31
HDAC6-235ENST00000495515 MYO15AQ9UKN7 3530 aa16.97■□□□□ 0.31
HDAC6-235ENST00000495515 TMEM202A6NGA9 273 aa16.96■□□□□ 0.31
HDAC6-235ENST00000495515 GPR89AB7ZAQ6 455 aa16.96■□□□□ 0.31
HDAC6-235ENST00000495515 TNFP01375 233 aa16.96■□□□□ 0.31
HDAC6-235ENST00000495515 GPR89BP0CG08 455 aa16.96■□□□□ 0.31
HDAC6-235ENST00000495515 JUNDP17535 347 aa16.96■□□□□ 0.31
HDAC6-235ENST00000495515 XIAPP98170 497 aa16.96■□□□□ 0.31
HDAC6-235ENST00000495515 ACVR1Q04771 509 aa16.96■□□□□ 0.31
HDAC6-235ENST00000495515 CACNG1Q06432 222 aa16.96■□□□□ 0.31
HDAC6-235ENST00000495515 EIF2B5Q13144 721 aaKnown RBP16.96■□□□□ 0.31
HDAC6-235ENST00000495515 SLC14A1Q13336 389 aa16.96■□□□□ 0.31
HDAC6-235ENST00000495515 NFATC2Q13469 925 aa16.96■□□□□ 0.31
HDAC6-235ENST00000495515 HIF1AQ16665 826 aa16.96■□□□□ 0.31
HDAC6-235ENST00000495515 ZRANB3Q5FWF4 1079 aa16.96■□□□□ 0.31
HDAC6-235ENST00000495515 PRAMEF14Q5SWL7 426 aa16.96■□□□□ 0.31
HDAC6-235ENST00000495515 DOK6Q6PKX4 331 aa16.96■□□□□ 0.31
HDAC6-235ENST00000495515 AFTPHQ6ULP2 937 aa16.96■□□□□ 0.31
HDAC6-235ENST00000495515 HID1Q8IV36 788 aa16.96■□□□□ 0.31
HDAC6-235ENST00000495515 PHACTR4Q8IZ21 702 aa16.96■□□□□ 0.31
HDAC6-235ENST00000495515 NOA1Q8NC60 698 aaKnown RBP16.96■□□□□ 0.31
HDAC6-235ENST00000495515 OR6P1Q8NGX9 317 aa16.96■□□□□ 0.31
HDAC6-235ENST00000495515 HEXDCQ8WVB3 486 aa16.96■□□□□ 0.31
HDAC6-235ENST00000495515 TBATAQ96M53 351 aa16.96■□□□□ 0.31
HDAC6-235ENST00000495515 TTC25Q96NG3 672 aa16.96■□□□□ 0.31
HDAC6-235ENST00000495515 TTC1Q99614 292 aa16.96■□□□□ 0.31
HDAC6-235ENST00000495515 RMI1Q9H9A7 625 aa16.96■□□□□ 0.31
HDAC6-235ENST00000495515 TRIM39Q9HCM9 518 aa16.96■□□□□ 0.31
HDAC6-235ENST00000495515 TM7SF3Q9NS93 570 aa16.96■□□□□ 0.31
HDAC6-235ENST00000495515 SPASTQ9UBP0 616 aa16.96■□□□□ 0.31
HDAC6-235ENST00000495515 SLC17A4Q9Y2C5 497 aa16.96■□□□□ 0.31
HDAC6-235ENST00000495515 PCDHGB2Q9Y5G2 931 aa16.96■□□□□ 0.31
HDAC6-235ENST00000495515 MAD1L1Q9Y6D9 718 aa16.96■□□□□ 0.31
HDAC6-235ENST00000495515 DGKBQ9Y6T7 804 aa16.96■□□□□ 0.31
HDAC6-235ENST00000495515 VPS13AQ96RL7 3174 aa16.96■□□□□ 0.31
HDAC6-235ENST00000495515 CACNA1EQ15878 2313 aa16.95■□□□□ 0.3
HDAC6-235ENST00000495515 LOC105378220A0A1B0GUY1 285 aaPredicted RBP16.95■□□□□ 0.3
HDAC6-235ENST00000495515 FAM237BA0A1B0GVD1 139 aa16.95■□□□□ 0.3
HDAC6-235ENST00000495515 PRSS38A1L453 326 aa16.95■□□□□ 0.3
HDAC6-235ENST00000495515 CCL22O00626 93 aa16.95■□□□□ 0.3
HDAC6-235ENST00000495515 CDX4O14627 284 aaPredicted RBP16.95■□□□□ 0.3
HDAC6-235ENST00000495515 VEGFDO43915 354 aa16.95■□□□□ 0.3
HDAC6-235ENST00000495515 PCDHGA12O60330 932 aa16.95■□□□□ 0.3
HDAC6-235ENST00000495515 UGT1A9O60656 530 aa16.95■□□□□ 0.3
HDAC6-235ENST00000495515 IVLP07476 585 aa16.95■□□□□ 0.3
HDAC6-235ENST00000495515 RALBP11234 206 aa16.95■□□□□ 0.3
HDAC6-235ENST00000495515 CTSEP14091 401 aa16.95■□□□□ 0.3
HDAC6-235ENST00000495515 UGT1A6P19224 532 aa16.95■□□□□ 0.3
HDAC6-235ENST00000495515 UGT1A1P22309 533 aa16.95■□□□□ 0.3
HDAC6-235ENST00000495515 UGT1A4P22310 534 aa16.95■□□□□ 0.3
HDAC6-235ENST00000495515 EPHA8P29322 1005 aaPredicted RBP16.95■□□□□ 0.3
HDAC6-235ENST00000495515 UGT1A3P35503 534 aa16.95■□□□□ 0.3
HDAC6-235ENST00000495515 UGT1A5P35504 534 aa16.95■□□□□ 0.3
HDAC6-235ENST00000495515 PPARGP37231 505 aaPredicted RBP16.95■□□□□ 0.3
HDAC6-235ENST00000495515 HK3P52790 923 aa16.95■□□□□ 0.3
HDAC6-235ENST00000495515 LIMK1P53667 647 aa16.95■□□□□ 0.3
HDAC6-235ENST00000495515 PEX6Q13608 980 aa16.95■□□□□ 0.3
HDAC6-235ENST00000495515 GTF2H3Q13889 308 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms