RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 APPL1Q9UKG1 709 aa14.98□□□□□ -0.01
USP39-217ENST00000491659 ENTPD2Q9Y5L3 495 aa14.98□□□□□ -0.01
USP39-217ENST00000491659 RNF215Q9Y6U7 377 aa14.98□□□□□ -0.01
USP39-217ENST00000491659 FREM2Q5SZK8 3169 aa14.97□□□□□ -0.01
USP39-217ENST00000491659 MIF4GDA9UHW6 222 aaKnown RBP14.97□□□□□ -0.01
USP39-217ENST00000491659 ZNF189O75820 626 aaPredicted RBP14.97□□□□□ -0.01
USP39-217ENST00000491659 ATP1A1P05023 1023 aaKnown RBP14.97□□□□□ -0.01
USP39-217ENST00000491659 RBL1P28749 1068 aa14.97□□□□□ -0.01
USP39-217ENST00000491659 LSSP48449 732 aa14.97□□□□□ -0.01
USP39-217ENST00000491659 GSDMDP57764 484 aa14.97□□□□□ -0.01
USP39-217ENST00000491659 EIF3EP60228 445 aaKnown RBP14.97□□□□□ -0.01
USP39-217ENST00000491659 TBC1D25Q3MII6 688 aa14.97□□□□□ -0.01
USP39-217ENST00000491659 PYCR3Q53H96 274 aa14.97□□□□□ -0.01
USP39-217ENST00000491659 PDPK2PQ6A1A2 396 aa14.97□□□□□ -0.01
USP39-217ENST00000491659 KDELC1Q6UW63 502 aa14.97□□□□□ -0.01
USP39-217ENST00000491659 LRRC69Q6ZNQ3 347 aa14.97□□□□□ -0.01
USP39-217ENST00000491659 SFTPA2Q8IWL1 248 aa14.97□□□□□ -0.01
USP39-217ENST00000491659 TRAM1L1Q8N609 369 aa14.97□□□□□ -0.01
USP39-217ENST00000491659 Q8N9G6 341 aaPredicted RBP14.97□□□□□ -0.01
USP39-217ENST00000491659 SNIP1Q8TAD8 396 aaKnown RBP14.97□□□□□ -0.01
USP39-217ENST00000491659 ALG3Q92685 438 aa14.97□□□□□ -0.01
USP39-217ENST00000491659 HERPUD2Q9BSE4 406 aa14.97□□□□□ -0.01
USP39-217ENST00000491659 GBA3Q9H227 469 aa14.97□□□□□ -0.01
USP39-217ENST00000491659 RMI1Q9H9A7 625 aa14.97□□□□□ -0.01
USP39-217ENST00000491659 TRIM10Q9UDY6 481 aa14.97□□□□□ -0.01
USP39-217ENST00000491659 ZNHIT2Q9UHR6 403 aa14.97□□□□□ -0.01
USP39-217ENST00000491659 LHX6Q9UPM6 363 aa14.97□□□□□ -0.01
USP39-217ENST00000491659 SATB2Q9UPW6 733 aa14.97□□□□□ -0.01
USP39-217ENST00000491659 OAS3Q9Y6K5 1087 aaKnown RBP14.97□□□□□ -0.01
USP39-217ENST00000491659 A0A087WV48 116 aa14.96□□□□□ -0.01
USP39-217ENST00000491659 CCDC187A0A096LP49 1063 aa14.96□□□□□ -0.01
USP39-217ENST00000491659 LOC285095A0A1B0GVY8 99 aa14.96□□□□□ -0.01
USP39-217ENST00000491659 GOLGA6L9A6NEM1 432 aa14.96□□□□□ -0.01
USP39-217ENST00000491659 RHPN2P1A8MT19 583 aa14.96□□□□□ -0.01
USP39-217ENST00000491659 TMX2-CTNND1H3BSU7 103 aa14.96□□□□□ -0.01
USP39-217ENST00000491659 RRP8O43159 456 aaKnown RBP14.96□□□□□ -0.01
USP39-217ENST00000491659 ZW10O43264 779 aa14.96□□□□□ -0.01
USP39-217ENST00000491659 TLX3O43711 291 aaPredicted RBP14.96□□□□□ -0.01
USP39-217ENST00000491659 EPOP01588 193 aa14.96□□□□□ -0.01
USP39-217ENST00000491659 FGF1P05230 155 aa14.96□□□□□ -0.01
USP39-217ENST00000491659 RBP3P10745 1247 aa14.96□□□□□ -0.01
USP39-217ENST00000491659 HLA-DPA1P20036 260 aa14.96□□□□□ -0.01
USP39-217ENST00000491659 PDX1P52945 283 aa14.96□□□□□ -0.01
USP39-217ENST00000491659 GEMP55040 296 aa14.96□□□□□ -0.01
USP39-217ENST00000491659 MAZP56270 477 aaKnown RBP14.96□□□□□ -0.01
USP39-217ENST00000491659 SIRPB2Q5JXA9 342 aa14.96□□□□□ -0.01
USP39-217ENST00000491659 C19orf48Q6RUI8 117 aa14.96□□□□□ -0.01
USP39-217ENST00000491659 SPRED1Q7Z699 444 aa14.96□□□□□ -0.01
USP39-217ENST00000491659 SLC25A41Q8N5S1 370 aa14.96□□□□□ -0.01
USP39-217ENST00000491659 GPR26Q8NDV2 337 aa14.96□□□□□ -0.01
USP39-217ENST00000491659 WDR36Q8NI36 951 aaKnown RBP14.96□□□□□ -0.01
USP39-217ENST00000491659 FGF11Q92914 225 aa14.96□□□□□ -0.01
USP39-217ENST00000491659 EID2BQ96D98 161 aa14.96□□□□□ -0.01
USP39-217ENST00000491659 OXNAD1Q96HP4 312 aaPredicted RBP14.96□□□□□ -0.01
USP39-217ENST00000491659 MRGPRX2Q96LB1 330 aa14.96□□□□□ -0.01
USP39-217ENST00000491659 ZNF578Q96N58 590 aaPredicted RBP14.96□□□□□ -0.01
USP39-217ENST00000491659 TMEM74Q96NL1 305 aa14.96□□□□□ -0.01
USP39-217ENST00000491659 TSGA10Q9BZW7 698 aa14.96□□□□□ -0.01
USP39-217ENST00000491659 STRADBQ9C0K7 418 aa14.96□□□□□ -0.01
USP39-217ENST00000491659 ZNF106Q9H2Y7 1883 aaKnown RBP14.96□□□□□ -0.01
USP39-217ENST00000491659 TRABDQ9H4I3 376 aa14.96□□□□□ -0.01
USP39-217ENST00000491659 EPB41L5Q9HCM4 733 aa14.96□□□□□ -0.01
USP39-217ENST00000491659 HACD3Q9P035 362 aa14.96□□□□□ -0.01
USP39-217ENST00000491659 CNOT6Q9ULM6 557 aaKnown RBP14.96□□□□□ -0.01
USP39-217ENST00000491659 PLEKHM1Q9Y4G2 1056 aa14.96□□□□□ -0.01
USP39-217ENST00000491659 SPO11Q9Y5K1 396 aa14.96□□□□□ -0.01
USP39-217ENST00000491659 DMXL2Q8TDJ6 3036 aa14.96□□□□□ -0.01
USP39-217ENST00000491659 A0A1W2PQM1 296 aa14.95□□□□□ -0.02
USP39-217ENST00000491659 CASC3O15234 703 aaKnown RBP14.95□□□□□ -0.02
USP39-217ENST00000491659 KCNN4O15554 427 aa14.95□□□□□ -0.02
USP39-217ENST00000491659 DNAJC6O75061 913 aa14.95□□□□□ -0.02
USP39-217ENST00000491659 ANXA9O76027 345 aa14.95□□□□□ -0.02
USP39-217ENST00000491659 DXOO77932 396 aaKnown RBP14.95□□□□□ -0.02
USP39-217ENST00000491659 SLC25A14O95258 325 aaPredicted RBP14.95□□□□□ -0.02
USP39-217ENST00000491659 ECEL1O95672 775 aa14.95□□□□□ -0.02
USP39-217ENST00000491659 FTCDO95954 541 aa14.95□□□□□ -0.02
USP39-217ENST00000491659 PYGMP11217 842 aa14.95□□□□□ -0.02
USP39-217ENST00000491659 RBMS1P29558 406 aaKnown RBP14.95□□□□□ -0.02
USP39-217ENST00000491659 ABCG1P45844 678 aa14.95□□□□□ -0.02
USP39-217ENST00000491659 INHBCP55103 352 aa14.95□□□□□ -0.02
USP39-217ENST00000491659 PCBP4P57723 403 aaKnown RBP14.95□□□□□ -0.02
USP39-217ENST00000491659 PRPSAP1Q14558 356 aa14.95□□□□□ -0.02
USP39-217ENST00000491659 SLC1A5Q15758 541 aa14.95□□□□□ -0.02
USP39-217ENST00000491659 MAP9Q49MG5 647 aa14.95□□□□□ -0.02
USP39-217ENST00000491659 ZDHHC20Q5W0Z9 365 aa14.95□□□□□ -0.02
USP39-217ENST00000491659 AADACL2Q6P093 401 aa14.95□□□□□ -0.02
USP39-217ENST00000491659 DARS2Q6PI48 645 aaKnown RBP14.95□□□□□ -0.02
USP39-217ENST00000491659 FOXR1Q6PIV2 292 aa14.95□□□□□ -0.02
USP39-217ENST00000491659 CHST15Q7LFX5 561 aaPredicted RBP14.95□□□□□ -0.02
USP39-217ENST00000491659 GLT6D1Q7Z4J2 308 aa14.95□□□□□ -0.02
USP39-217ENST00000491659 C17orf82Q86X59 251 aaPredicted RBP14.95□□□□□ -0.02
USP39-217ENST00000491659 PHYKPLQ8IUZ5 450 aa14.95□□□□□ -0.02
USP39-217ENST00000491659 NAGSQ8N159 534 aa14.95□□□□□ -0.02
USP39-217ENST00000491659 ARL14Q8N4G2 192 aa14.95□□□□□ -0.02
USP39-217ENST00000491659 HNRNPLLQ8WVV9 542 aaKnown RBP14.95□□□□□ -0.02
USP39-217ENST00000491659 LIN37Q96GY3 246 aaPredicted RBP14.95□□□□□ -0.02
USP39-217ENST00000491659 PLEKHG4BQ96PX9 1271 aa14.95□□□□□ -0.02
USP39-217ENST00000491659 CARD9Q9H257 536 aa14.95□□□□□ -0.02
USP39-217ENST00000491659 C10orf88Q9H8K7 445 aa14.95□□□□□ -0.02
USP39-217ENST00000491659 THSD1Q9NS62 852 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms