RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 LZTFL1Q9NQ48 299 aa17.99■□□□□ 0.47
COL9A3-214ENST00000490398 TRNAU1APQ9NX07 287 aaKnown RBP17.99■□□□□ 0.47
COL9A3-214ENST00000490398 TAAR2Q9P1P5 351 aa17.99■□□□□ 0.47
COL9A3-214ENST00000490398 RNF215Q9Y6U7 377 aa17.99■□□□□ 0.47
COL9A3-214ENST00000490398 PMS2P1A4D2B8 440 aa17.98■□□□□ 0.47
COL9A3-214ENST00000490398 DNAJC6O75061 913 aa17.98■□□□□ 0.47
COL9A3-214ENST00000490398 CSO75390 466 aaKnown RBP17.98■□□□□ 0.47
COL9A3-214ENST00000490398 EML2O95834 649 aa17.98■□□□□ 0.47
COL9A3-214ENST00000490398 EPOP01588 193 aa17.98■□□□□ 0.47
COL9A3-214ENST00000490398 ADRA1AP35348 466 aa17.98■□□□□ 0.47
COL9A3-214ENST00000490398 CETN2P41208 172 aa17.98■□□□□ 0.47
COL9A3-214ENST00000490398 PDX1P52945 283 aa17.98■□□□□ 0.47
COL9A3-214ENST00000490398 MPP3Q13368 585 aa17.98■□□□□ 0.47
COL9A3-214ENST00000490398 HLTFQ14527 1009 aaKnown RBP eCLIP17.98■□□□□ 0.47
COL9A3-214ENST00000490398 KHDC1Q4VXA5 237 aaKnown RBP17.98■□□□□ 0.47
COL9A3-214ENST00000490398 MICALCLQ6ZW33 695 aa17.98■□□□□ 0.47
COL9A3-214ENST00000490398 CACTIN-AS1Q8N1I8 211 aa17.98■□□□□ 0.47
COL9A3-214ENST00000490398 FAM71DQ8N9W8 422 aa17.98■□□□□ 0.47
COL9A3-214ENST00000490398 BLOC1S5Q8TDH9 187 aa17.98■□□□□ 0.47
COL9A3-214ENST00000490398 ATG4AQ8WYN0 398 aa17.98■□□□□ 0.47
COL9A3-214ENST00000490398 SPATA13Q96N96 652 aa17.98■□□□□ 0.47
COL9A3-214ENST00000490398 OR2M4Q96R27 311 aa17.98■□□□□ 0.47
COL9A3-214ENST00000490398 SPATA16Q9BXB7 569 aa17.98■□□□□ 0.47
COL9A3-214ENST00000490398 ANKRD11Q6UB99 2663 aaPredicted RBP17.97■□□□□ 0.47
COL9A3-214ENST00000490398 CACNA1BQ00975 2339 aa17.97■□□□□ 0.47
COL9A3-214ENST00000490398 A0A1W2PQM1 296 aa17.97■□□□□ 0.47
COL9A3-214ENST00000490398 GPR39O43194 453 aa17.97■□□□□ 0.47
COL9A3-214ENST00000490398 KRT86O43790 486 aa17.97■□□□□ 0.47
COL9A3-214ENST00000490398 USP12O75317 370 aa17.97■□□□□ 0.47
COL9A3-214ENST00000490398 METTL18O95568 372 aa17.97■□□□□ 0.47
COL9A3-214ENST00000490398 CCL7P80098 99 aa17.97■□□□□ 0.47
COL9A3-214ENST00000490398 SPARCL1Q14515 664 aa17.97■□□□□ 0.47
COL9A3-214ENST00000490398 C14orf28Q4W4Y0 310 aa17.97■□□□□ 0.47
COL9A3-214ENST00000490398 MEI1Q5TIA1 1274 aa17.97■□□□□ 0.47
COL9A3-214ENST00000490398 CCDC70Q6NSX1 233 aa17.97■□□□□ 0.47
COL9A3-214ENST00000490398 C17orf82Q86X59 251 aaPredicted RBP17.97■□□□□ 0.47
COL9A3-214ENST00000490398 TAB3Q8N5C8 712 aaPredicted RBP17.97■□□□□ 0.47
COL9A3-214ENST00000490398 TRAM1L1Q8N609 369 aa17.97■□□□□ 0.47
COL9A3-214ENST00000490398 Q8N9G6 341 aaPredicted RBP17.97■□□□□ 0.47
COL9A3-214ENST00000490398 CCDC112Q8NEF3 446 aa17.97■□□□□ 0.47
COL9A3-214ENST00000490398 SLC35B2Q8TB61 432 aa17.97■□□□□ 0.47
COL9A3-214ENST00000490398 ZDHHC1Q8WTX9 485 aa17.97■□□□□ 0.47
COL9A3-214ENST00000490398 NAT6Q93015 286 aa17.97■□□□□ 0.47
COL9A3-214ENST00000490398 GSDMCQ9BYG8 508 aa17.97■□□□□ 0.47
COL9A3-214ENST00000490398 TSGA10Q9BZW7 698 aa17.97■□□□□ 0.47
COL9A3-214ENST00000490398 SYNDIG1Q9H7V2 258 aa17.97■□□□□ 0.47
COL9A3-214ENST00000490398 GRPEL1Q9HAV7 217 aa17.97■□□□□ 0.47
COL9A3-214ENST00000490398 EVA1BQ9NVM1 165 aa17.97■□□□□ 0.47
COL9A3-214ENST00000490398 IL17CQ9P0M4 197 aa17.97■□□□□ 0.47
COL9A3-214ENST00000490398 ATXN10Q9UBB4 475 aa17.97■□□□□ 0.47
COL9A3-214ENST00000490398 NFKBIL1Q9UBC1 381 aaPredicted RBP17.97■□□□□ 0.47
COL9A3-214ENST00000490398 RAXQ9Y2V3 346 aa17.97■□□□□ 0.47
COL9A3-214ENST00000490398 ITPR1Q14643 2758 aa17.97■□□□□ 0.47
COL9A3-214ENST00000490398 RP1P56715 2156 aa17.97■□□□□ 0.47
COL9A3-214ENST00000490398 APC2O95996 2303 aa17.97■□□□□ 0.47
COL9A3-214ENST00000490398 KNTC1P50748 2209 aa17.96■□□□□ 0.47
COL9A3-214ENST00000490398 PKD1L2Q7Z442 2459 aa17.96■□□□□ 0.47
COL9A3-214ENST00000490398 MYLKQ15746 1914 aa17.96■□□□□ 0.47
COL9A3-214ENST00000490398 NTN3O00634 580 aaPredicted RBP17.96■□□□□ 0.47
COL9A3-214ENST00000490398 MTX2O75431 263 aa17.96■□□□□ 0.47
COL9A3-214ENST00000490398 ECEL1O95672 775 aa17.96■□□□□ 0.47
COL9A3-214ENST00000490398 PYGLP06737 847 aa17.96■□□□□ 0.47
COL9A3-214ENST00000490398 ZNF8P17098 575 aaPredicted RBP17.96■□□□□ 0.47
COL9A3-214ENST00000490398 ACTR1BP42025 376 aa17.96■□□□□ 0.47
COL9A3-214ENST00000490398 GEMP55040 296 aa17.96■□□□□ 0.47
COL9A3-214ENST00000490398 DCDC1P59894 354 aa17.96■□□□□ 0.47
COL9A3-214ENST00000490398 ACTR1AP61163 376 aa17.96■□□□□ 0.47
COL9A3-214ENST00000490398 ILF3Q12906 894 aaKnown RBP eCLIP17.96■□□□□ 0.47
COL9A3-214ENST00000490398 MSLNQ13421 630 aaPredicted RBP17.96■□□□□ 0.47
COL9A3-214ENST00000490398 ISXQ2M1V0 245 aa17.96■□□□□ 0.47
COL9A3-214ENST00000490398 ZNF569Q5MCW4 686 aa17.96■□□□□ 0.47
COL9A3-214ENST00000490398 CERCAMQ5T4B2 595 aa17.96■□□□□ 0.47
COL9A3-214ENST00000490398 ITPRIPL1Q6GPH6 555 aa17.96■□□□□ 0.47
COL9A3-214ENST00000490398 DENND5AQ6IQ26 1287 aa17.96■□□□□ 0.47
COL9A3-214ENST00000490398 RANBP10Q6VN20 620 aa17.96■□□□□ 0.47
COL9A3-214ENST00000490398 GALNT13Q8IUC8 556 aa17.96■□□□□ 0.47
COL9A3-214ENST00000490398 NAGSQ8N159 534 aa17.96■□□□□ 0.47
COL9A3-214ENST00000490398 OR2AG1Q9H205 316 aa17.96■□□□□ 0.47
COL9A3-214ENST00000490398 ZNHIT2Q9UHR6 403 aa17.96■□□□□ 0.47
COL9A3-214ENST00000490398 KCTD3Q9Y597 815 aa17.96■□□□□ 0.47
COL9A3-214ENST00000490398 TRBV23OR9-2A0A075B6M9 112 aa17.95■□□□□ 0.46
COL9A3-214ENST00000490398 C5orf60A6NFR6 353 aa17.95■□□□□ 0.46
COL9A3-214ENST00000490398 GAPDHSO14556 408 aaPredicted RBP17.95■□□□□ 0.46
COL9A3-214ENST00000490398 PTMAP06454 111 aaKnown RBP17.95■□□□□ 0.46
COL9A3-214ENST00000490398 CCDC175P0C221 793 aa17.95■□□□□ 0.46
COL9A3-214ENST00000490398 HLA-DPA1P20036 260 aa17.95■□□□□ 0.46
COL9A3-214ENST00000490398 HMGCLP35914 325 aa17.95■□□□□ 0.46
COL9A3-214ENST00000490398 RTP5Q14D33 572 aa17.95■□□□□ 0.46
COL9A3-214ENST00000490398 KCTD19Q17RG1 926 aaPredicted RBP17.95■□□□□ 0.46
COL9A3-214ENST00000490398 ATP13A5Q4VNC0 1218 aa17.95■□□□□ 0.46
COL9A3-214ENST00000490398 CHST15Q7LFX5 561 aaPredicted RBP17.95■□□□□ 0.46
COL9A3-214ENST00000490398 TMPRSS9Q7Z410 1059 aa17.95■□□□□ 0.46
COL9A3-214ENST00000490398 B3GNT8Q7Z7M8 397 aa17.95■□□□□ 0.46
COL9A3-214ENST00000490398 ADGRG6Q86SQ4 1221 aa17.95■□□□□ 0.46
COL9A3-214ENST00000490398 PRUNE1Q86TP1 453 aa17.95■□□□□ 0.46
COL9A3-214ENST00000490398 KLHDC8BQ8IXV7 354 aa17.95■□□□□ 0.46
COL9A3-214ENST00000490398 ARL14Q8N4G2 192 aa17.95■□□□□ 0.46
COL9A3-214ENST00000490398 GLYATL1Q969I3 302 aa17.95■□□□□ 0.46
COL9A3-214ENST00000490398 ATXN7L3BQ96GX2 97 aa17.95■□□□□ 0.46
COL9A3-214ENST00000490398 DEPDC7Q96QD5 511 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms