RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 FAM53AQ6NSI3 398 aaPredicted RBP2.88□□□□□ -1.95
CPSF3-205ENST00000489629 SRBD1Q8N5C6 995 aaKnown RBP2.88□□□□□ -1.95
CPSF3-205ENST00000489629 STPG4Q8N801 248 aa2.88□□□□□ -1.95
CPSF3-205ENST00000489629 FCAMRQ8WWV6 532 aa2.88□□□□□ -1.95
CPSF3-205ENST00000489629 TM9SF4Q92544 642 aa2.88□□□□□ -1.95
CPSF3-205ENST00000489629 APBB2Q92870 758 aa2.88□□□□□ -1.95
CPSF3-205ENST00000489629 MAELQ96JY0 434 aaKnown RBP2.88□□□□□ -1.95
CPSF3-205ENST00000489629 ASCL2Q99929 193 aa2.88□□□□□ -1.95
CPSF3-205ENST00000489629 HERPUD2Q9BSE4 406 aa2.88□□□□□ -1.95
CPSF3-205ENST00000489629 ACSS1Q9NUB1 689 aaPredicted RBP2.88□□□□□ -1.95
CPSF3-205ENST00000489629 KCNK7Q9Y2U2 307 aa2.88□□□□□ -1.95
CPSF3-205ENST00000489629 TP53BP1Q12888 1972 aaPredicted RBP2.88□□□□□ -1.95
CPSF3-205ENST00000489629 CACNA1FO60840 1977 aa2.87□□□□□ -1.95
CPSF3-205ENST00000489629 IGKV3D-20A0A0C4DH25 116 aa2.87□□□□□ -1.95
CPSF3-205ENST00000489629 C5orf60A6NFR6 353 aa2.87□□□□□ -1.95
CPSF3-205ENST00000489629 KRTAP16-1A8MUX0 517 aa2.87□□□□□ -1.95
CPSF3-205ENST00000489629 NR5A2O00482 541 aa2.87□□□□□ -1.95
CPSF3-205ENST00000489629 EIF3DO15371 548 aaKnown RBP eCLIP2.87□□□□□ -1.95
CPSF3-205ENST00000489629 PRSS56P0CW18 603 aa2.87□□□□□ -1.95
CPSF3-205ENST00000489629 GNB3P16520 340 aa2.87□□□□□ -1.95
CPSF3-205ENST00000489629 CHRNB4P30926 498 aa2.87□□□□□ -1.95
CPSF3-205ENST00000489629 TLE2Q04725 743 aa2.87□□□□□ -1.95
CPSF3-205ENST00000489629 BIRC2Q13490 618 aa2.87□□□□□ -1.95
CPSF3-205ENST00000489629 FGFBP1Q14512 234 aa2.87□□□□□ -1.95
CPSF3-205ENST00000489629 COL28A1Q2UY09 1125 aa2.87□□□□□ -1.95
CPSF3-205ENST00000489629 DCST1Q5T197 706 aa2.87□□□□□ -1.95
CPSF3-205ENST00000489629 DPPA4Q7L190 304 aa2.87□□□□□ -1.95
CPSF3-205ENST00000489629 ATG9AQ7Z3C6 839 aa2.87□□□□□ -1.95
CPSF3-205ENST00000489629 TRPT1Q86TN4 253 aaKnown RBP2.87□□□□□ -1.95
CPSF3-205ENST00000489629 SLC38A5Q8WUX1 472 aa2.87□□□□□ -1.95
CPSF3-205ENST00000489629 ANKRD9Q96BM1 317 aaPredicted RBP2.87□□□□□ -1.95
CPSF3-205ENST00000489629 KLHL29Q96CT2 875 aa2.87□□□□□ -1.95
CPSF3-205ENST00000489629 STAMBPL1Q96FJ0 436 aa2.87□□□□□ -1.95
CPSF3-205ENST00000489629 APOPT1Q96IL0 206 aa2.87□□□□□ -1.95
CPSF3-205ENST00000489629 LRR1Q96L50 414 aa2.87□□□□□ -1.95
CPSF3-205ENST00000489629 ZNF599Q96NL3 588 aa2.87□□□□□ -1.95
CPSF3-205ENST00000489629 TMEM47Q9BQJ4 181 aa2.87□□□□□ -1.95
CPSF3-205ENST00000489629 UPF2Q9HAU5 1272 aaKnown RBP2.87□□□□□ -1.95
CPSF3-205ENST00000489629 SLC6A13Q9NSD5 602 aa2.87□□□□□ -1.95
CPSF3-205ENST00000489629 KCND2Q9NZV8 630 aa2.87□□□□□ -1.95
CPSF3-205ENST00000489629 KLHL20Q9Y2M5 609 aa2.87□□□□□ -1.95
CPSF3-205ENST00000489629 A0A1W2PP11 408 aa2.86□□□□□ -1.95
CPSF3-205ENST00000489629 FAM90A26D6RGX4 464 aa2.86□□□□□ -1.95
CPSF3-205ENST00000489629 BAG4O95429 457 aaKnown RBP2.86□□□□□ -1.95
CPSF3-205ENST00000489629 HOXC8P31273 242 aa2.86□□□□□ -1.95
CPSF3-205ENST00000489629 AHRP35869 848 aa2.86□□□□□ -1.95
CPSF3-205ENST00000489629 CPOXP36551 454 aa2.86□□□□□ -1.95
CPSF3-205ENST00000489629 UBA7P41226 1012 aa2.86□□□□□ -1.95
CPSF3-205ENST00000489629 RPP30P78346 268 aaKnown RBP2.86□□□□□ -1.95
CPSF3-205ENST00000489629 PTP4A2Q12974 167 aa2.86□□□□□ -1.95
CPSF3-205ENST00000489629 DRAP1Q14919 205 aaPredicted RBP2.86□□□□□ -1.95
CPSF3-205ENST00000489629 BAK1Q16611 211 aa2.86□□□□□ -1.95
CPSF3-205ENST00000489629 TECRLQ5HYJ1 363 aa2.86□□□□□ -1.95
CPSF3-205ENST00000489629 CYP26C1Q6V0L0 522 aa2.86□□□□□ -1.95
CPSF3-205ENST00000489629 C15orf39Q6ZRI6 1047 aa2.86□□□□□ -1.95
CPSF3-205ENST00000489629 CACNA2D4Q7Z3S7 1137 aa2.86□□□□□ -1.95
CPSF3-205ENST00000489629 GPR180Q86V85 440 aa2.86□□□□□ -1.95
CPSF3-205ENST00000489629 ANKRD18AQ8IVF6 992 aa2.86□□□□□ -1.95
CPSF3-205ENST00000489629 MAP7D3Q8IWC1 876 aa2.86□□□□□ -1.95
CPSF3-205ENST00000489629 ZNF248Q8NDW4 579 aa2.86□□□□□ -1.95
CPSF3-205ENST00000489629 SLC44A1Q8WWI5 657 aa2.86□□□□□ -1.95
CPSF3-205ENST00000489629 IGSF8Q969P0 613 aa2.86□□□□□ -1.95
CPSF3-205ENST00000489629 ARHGEF26Q96DR7 871 aa2.86□□□□□ -1.95
CPSF3-205ENST00000489629 ACOX2Q99424 681 aa2.86□□□□□ -1.95
CPSF3-205ENST00000489629 EIF2AK1Q9BQI3 630 aaKnown RBP2.86□□□□□ -1.95
CPSF3-205ENST00000489629 SLC52A3Q9NQ40 469 aa2.86□□□□□ -1.95
CPSF3-205ENST00000489629 ASAH2Q9NR71 780 aa2.86□□□□□ -1.95
CPSF3-205ENST00000489629 TCP11L1Q9NUJ3 509 aa2.86□□□□□ -1.95
CPSF3-205ENST00000489629 MAP3K20Q9NYL2 800 aaKnown RBP2.86□□□□□ -1.95
CPSF3-205ENST00000489629 FBXL2Q9UKC9 423 aa2.86□□□□□ -1.95
CPSF3-205ENST00000489629 TBX20Q9UMR3 447 aa2.86□□□□□ -1.95
CPSF3-205ENST00000489629 AAR2Q9Y312 384 aaKnown RBP2.86□□□□□ -1.95
CPSF3-205ENST00000489629 LRRC53A6NM62 1247 aa2.85□□□□□ -1.95
CPSF3-205ENST00000489629 HHLA1C9JL84 531 aa2.85□□□□□ -1.95
CPSF3-205ENST00000489629 NCAM2O15394 837 aa2.85□□□□□ -1.95
CPSF3-205ENST00000489629 KCNN4O15554 427 aa2.85□□□□□ -1.95
CPSF3-205ENST00000489629 CD48P09326 243 aa2.85□□□□□ -1.95
CPSF3-205ENST00000489629 HNRNPA1P09651 372 aaKnown RBP eCLIP2.85□□□□□ -1.95
CPSF3-205ENST00000489629 HSD3B1P14060 373 aa2.85□□□□□ -1.95
CPSF3-205ENST00000489629 UGT1A1P22309 533 aa2.85□□□□□ -1.95
CPSF3-205ENST00000489629 HOXC9P31274 260 aa2.85□□□□□ -1.95
CPSF3-205ENST00000489629 AMPHP49418 695 aa2.85□□□□□ -1.95
CPSF3-205ENST00000489629 LUMP51884 338 aaPredicted RBP2.85□□□□□ -1.95
CPSF3-205ENST00000489629 VAMP2P63027 116 aa2.85□□□□□ -1.95
CPSF3-205ENST00000489629 PLIN5Q00G26 463 aa2.85□□□□□ -1.95
CPSF3-205ENST00000489629 GALNT2Q10471 571 aa2.85□□□□□ -1.95
CPSF3-205ENST00000489629 GPR68Q15743 365 aa2.85□□□□□ -1.95
CPSF3-205ENST00000489629 LPAL2Q16609 132 aa2.85□□□□□ -1.95
CPSF3-205ENST00000489629 GSTA3Q16772 222 aa2.85□□□□□ -1.95
CPSF3-205ENST00000489629 ZC2HC1CQ53FD0 456 aaPredicted RBP2.85□□□□□ -1.95
CPSF3-205ENST00000489629 KRTCAP3Q53RY4 240 aa2.85□□□□□ -1.95
CPSF3-205ENST00000489629 LCN10Q6JVE6 187 aa2.85□□□□□ -1.95
CPSF3-205ENST00000489629 PLEKHM3Q6ZWE6 761 aa2.85□□□□□ -1.95
CPSF3-205ENST00000489629 ANO5Q75V66 913 aa2.85□□□□□ -1.95
CPSF3-205ENST00000489629 ADSSL1Q8N142 457 aa2.85□□□□□ -1.95
CPSF3-205ENST00000489629 RBM15BQ8NDT2 890 aaKnown RBP2.85□□□□□ -1.95
CPSF3-205ENST00000489629 GCC1Q96CN9 775 aa2.85□□□□□ -1.95
CPSF3-205ENST00000489629 SENP5Q96HI0 755 aaPredicted RBP2.85□□□□□ -1.95
CPSF3-205ENST00000489629 UBXN10Q96LJ8 280 aa2.85□□□□□ -1.95
CPSF3-205ENST00000489629 PCGF1Q9BSM1 259 aa2.85□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms