RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 NDST3O95803 873 aa17.86■□□□□ 0.45
VIM-206ENST00000487938 IGLV3-27P01718 113 aa17.86■□□□□ 0.45
VIM-206ENST00000487938 CES1P23141 567 aa17.86■□□□□ 0.45
VIM-206ENST00000487938 SLC6A2P23975 617 aa17.86■□□□□ 0.45
VIM-206ENST00000487938 PCSK6P29122 969 aa17.86■□□□□ 0.45
VIM-206ENST00000487938 SLC6A4P31645 630 aa17.86■□□□□ 0.45
VIM-206ENST00000487938 FLT3LGP49771 235 aa17.86■□□□□ 0.45
VIM-206ENST00000487938 LAMB3Q13751 1172 aa17.86■□□□□ 0.45
VIM-206ENST00000487938 PPP4R4Q6NUP7 873 aa17.86■□□□□ 0.45
VIM-206ENST00000487938 SLC24A5Q71RS6 500 aa17.86■□□□□ 0.45
VIM-206ENST00000487938 MINDY1Q8N5J2 469 aa17.86■□□□□ 0.45
VIM-206ENST00000487938 MDGA1Q8NFP4 955 aa17.86■□□□□ 0.45
VIM-206ENST00000487938 LINC01599Q8WXQ3 324 aa17.86■□□□□ 0.45
VIM-206ENST00000487938 ZUFSPQ96AP4 578 aa17.86■□□□□ 0.45
VIM-206ENST00000487938 TRIB3Q96RU7 358 aa17.86■□□□□ 0.45
VIM-206ENST00000487938 TCF12Q99081 682 aa17.86■□□□□ 0.45
VIM-206ENST00000487938 GPR62Q9BZJ7 368 aa17.86■□□□□ 0.45
VIM-206ENST00000487938 CCDC68Q9H2F9 335 aa17.86■□□□□ 0.45
VIM-206ENST00000487938 POPDC3Q9HBV1 291 aa17.86■□□□□ 0.45
VIM-206ENST00000487938 SYTL2Q9HCH5 934 aa17.86■□□□□ 0.45
VIM-206ENST00000487938 SDR39U1Q9NRG7 319 aaPredicted RBP17.86■□□□□ 0.45
VIM-206ENST00000487938 ETAA1Q9NY74 926 aa17.86■□□□□ 0.45
VIM-206ENST00000487938 TAS2R13Q9NYV9 303 aa17.86■□□□□ 0.45
VIM-206ENST00000487938 ABCD2Q9UBJ2 740 aa17.86■□□□□ 0.45
VIM-206ENST00000487938 DHRS12A0PJE2 317 aa17.85■□□□□ 0.45
VIM-206ENST00000487938 FAM92AA1XBS5 289 aa17.85■□□□□ 0.45
VIM-206ENST00000487938 NPEPPSL1A6NEC2 478 aa17.85■□□□□ 0.45
VIM-206ENST00000487938 INPPL1O15357 1258 aa17.85■□□□□ 0.45
VIM-206ENST00000487938 NDUFS3O75489 264 aa17.85■□□□□ 0.45
VIM-206ENST00000487938 ASLP04424 464 aa17.85■□□□□ 0.45
VIM-206ENST00000487938 BMP2P12643 396 aa17.85■□□□□ 0.45
VIM-206ENST00000487938 MAPKAPK2P49137 400 aa17.85■□□□□ 0.45
VIM-206ENST00000487938 CLCN2P51788 898 aa17.85■□□□□ 0.45
VIM-206ENST00000487938 RAD51Q06609 339 aa17.85■□□□□ 0.45
VIM-206ENST00000487938 LCP2Q13094 533 aa17.85■□□□□ 0.45
VIM-206ENST00000487938 PTPRRQ15256 657 aa17.85■□□□□ 0.45
VIM-206ENST00000487938 TYSND1Q2T9J0 566 aa17.85■□□□□ 0.45
VIM-206ENST00000487938 FUT11Q495W5 492 aa17.85■□□□□ 0.45
VIM-206ENST00000487938 NHSL2Q5HYW2 709 aa17.85■□□□□ 0.45
VIM-206ENST00000487938 RSPO2Q6UXX9 243 aaPredicted RBP17.85■□□□□ 0.45
VIM-206ENST00000487938 CBR4Q8N4T8 237 aa17.85■□□□□ 0.45
VIM-206ENST00000487938 NLE1Q9NVX2 485 aaPredicted RBP17.85■□□□□ 0.45
VIM-206ENST00000487938 PADI4Q9UM07 663 aa17.85■□□□□ 0.45
VIM-206ENST00000487938 CEPT1Q9Y6K0 416 aa17.85■□□□□ 0.45
VIM-206ENST00000487938 A0A0U1RQS6 177 aa17.84■□□□□ 0.45
VIM-206ENST00000487938 F5H5T6 163 aa17.84■□□□□ 0.45
VIM-206ENST00000487938 H3BNH8 94 aa17.84■□□□□ 0.45
VIM-206ENST00000487938 TLR5O60602 858 aa17.84■□□□□ 0.45
VIM-206ENST00000487938 EOMESO95936 686 aa17.84■□□□□ 0.45
VIM-206ENST00000487938 MTHFD1P11586 935 aaKnown RBP17.84■□□□□ 0.45
VIM-206ENST00000487938 HOXB8P17481 243 aaPredicted RBP17.84■□□□□ 0.45
VIM-206ENST00000487938 MAGEA11P43364 429 aa17.84■□□□□ 0.45
VIM-206ENST00000487938 CDH15P55291 814 aa17.84■□□□□ 0.45
VIM-206ENST00000487938 ANKS6Q68DC2 871 aa17.84■□□□□ 0.45
VIM-206ENST00000487938 UGT3A1Q6NUS8 523 aa17.84■□□□□ 0.45
VIM-206ENST00000487938 BLOC1S3Q6QNY0 202 aa17.84■□□□□ 0.45
VIM-206ENST00000487938 RNF19BQ6ZMZ0 732 aa17.84■□□□□ 0.45
VIM-206ENST00000487938 GLT6D1Q7Z4J2 308 aa17.84■□□□□ 0.45
VIM-206ENST00000487938 PEX13Q92968 403 aa17.84■□□□□ 0.45
VIM-206ENST00000487938 DERL2Q9GZP9 239 aa17.84■□□□□ 0.45
VIM-206ENST00000487938 SLC52A3Q9NQ40 469 aa17.84■□□□□ 0.45
VIM-206ENST00000487938 GID8Q9NWU2 228 aa17.84■□□□□ 0.45
VIM-206ENST00000487938 MYRFQ9Y2G1 1151 aa17.84■□□□□ 0.45
VIM-206ENST00000487938 GPR45Q9Y5Y3 372 aa17.84■□□□□ 0.45
VIM-206ENST00000487938 ZFP37Q9Y6Q3 630 aaPredicted RBP17.84■□□□□ 0.45
VIM-206ENST00000487938 ANKRD12Q6UB98 2062 aa17.84■□□□□ 0.45
VIM-206ENST00000487938 GREB1Q4ZG55 1949 aa17.84■□□□□ 0.45
VIM-206ENST00000487938 BTN3A1O00481 513 aa17.84■□□□□ 0.45
VIM-206ENST00000487938 OR1I1O60431 355 aa17.84■□□□□ 0.45
VIM-206ENST00000487938 GNAO1P09471 354 aa17.84■□□□□ 0.45
VIM-206ENST00000487938 HOXD9P28356 352 aaPredicted RBP17.84■□□□□ 0.45
VIM-206ENST00000487938 OXTRP30559 389 aa17.84■□□□□ 0.45
VIM-206ENST00000487938 CASP2P42575 452 aa17.84■□□□□ 0.45
VIM-206ENST00000487938 ATP6V0D1P61421 351 aa17.84■□□□□ 0.45
VIM-206ENST00000487938 MBTPS1Q14703 1052 aa17.84■□□□□ 0.45
VIM-206ENST00000487938 PTPRNQ16849 979 aa17.84■□□□□ 0.45
VIM-206ENST00000487938 RABL3Q5HYI8 236 aa17.84■□□□□ 0.45
VIM-206ENST00000487938 FAM26DQ5JW98 314 aa17.84■□□□□ 0.45
VIM-206ENST00000487938 SYVN1Q86TM6 617 aa17.84■□□□□ 0.45
VIM-206ENST00000487938 DCBLD1Q8N8Z6 715 aa17.84■□□□□ 0.45
VIM-206ENST00000487938 FAM47BQ8NA70 645 aa17.84■□□□□ 0.45
VIM-206ENST00000487938 ACOX2Q99424 681 aa17.84■□□□□ 0.45
VIM-206ENST00000487938 HACD3Q9P035 362 aa17.84■□□□□ 0.45
VIM-206ENST00000487938 LCHNA4D1U4 455 aa17.83■□□□□ 0.45
VIM-206ENST00000487938 TMEM189-UBE2V1I3L0A0 370 aa17.83■□□□□ 0.45
VIM-206ENST00000487938 BAIAP3O94812 1187 aa17.83■□□□□ 0.45
VIM-206ENST00000487938 MATN4O95460 622 aa17.83■□□□□ 0.45
VIM-206ENST00000487938 CKBP12277 381 aa17.83■□□□□ 0.45
VIM-206ENST00000487938 NCK1P16333 377 aa17.83■□□□□ 0.45
VIM-206ENST00000487938 IL10P22301 178 aa17.83■□□□□ 0.45
VIM-206ENST00000487938 SLC5A2P31639 672 aa17.83■□□□□ 0.45
VIM-206ENST00000487938 ZNF140P52738 457 aaPredicted RBP17.83■□□□□ 0.45
VIM-206ENST00000487938 FCGRTP55899 365 aa17.83■□□□□ 0.45
VIM-206ENST00000487938 GNA12Q03113 381 aa17.83■□□□□ 0.45
VIM-206ENST00000487938 SREBF2Q12772 1141 aa17.83■□□□□ 0.45
VIM-206ENST00000487938 DUSP4Q13115 394 aa17.83■□□□□ 0.45
VIM-206ENST00000487938 PAGE3Q5JUK9 113 aa17.83■□□□□ 0.45
VIM-206ENST00000487938 PRMT9Q6P2P2 845 aa17.83■□□□□ 0.45
VIM-206ENST00000487938 FUBP1Q96AE4 644 aaKnown RBP17.83■□□□□ 0.45
VIM-206ENST00000487938 HAUS8Q9BT25 410 aa17.83■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms