RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 F5H0A9 414 aaPredicted RBP5.87□□□□□ -1.47
USP40-213ENST00000483216 HNRNPCL1O60812 293 aaKnown RBP5.87□□□□□ -1.47
USP40-213ENST00000483216 NKX2-2O95096 273 aa5.87□□□□□ -1.47
USP40-213ENST00000483216 IPO7O95373 1038 aaKnown RBP5.87□□□□□ -1.47
USP40-213ENST00000483216 HNRNPCL4P0DMR1 293 aa5.87□□□□□ -1.47
USP40-213ENST00000483216 S1PR1P21453 382 aa5.87□□□□□ -1.47
USP40-213ENST00000483216 CHMP24386 653 aa5.87□□□□□ -1.47
USP40-213ENST00000483216 F2RL1P55085 397 aa5.87□□□□□ -1.47
USP40-213ENST00000483216 CEBPZQ03701 1054 aaKnown RBP5.87□□□□□ -1.47
USP40-213ENST00000483216 GOLGA8DPQ0D2H9 430 aa5.87□□□□□ -1.47
USP40-213ENST00000483216 FAAH2Q6GMR7 532 aa5.87□□□□□ -1.47
USP40-213ENST00000483216 DUS1LQ6P1R4 473 aaKnown RBP5.87□□□□□ -1.47
USP40-213ENST00000483216 CYP20A1Q6UW02 462 aa5.87□□□□□ -1.47
USP40-213ENST00000483216 EXOC3L1Q86VI1 746 aa5.87□□□□□ -1.47
USP40-213ENST00000483216 RFLNBQ8N5W9 214 aa5.87□□□□□ -1.47
USP40-213ENST00000483216 ZNF441Q8N8Z8 693 aa5.87□□□□□ -1.47
USP40-213ENST00000483216 OR2AK2Q8NG84 335 aa5.87□□□□□ -1.47
USP40-213ENST00000483216 LNX1Q8TBB1 728 aaPredicted RBP5.87□□□□□ -1.47
USP40-213ENST00000483216 SGCDQ92629 289 aa5.87□□□□□ -1.47
USP40-213ENST00000483216 ARHGEF26Q96DR7 871 aa5.87□□□□□ -1.47
USP40-213ENST00000483216 RRNAD1Q96FB5 475 aaKnown RBP5.87□□□□□ -1.47
USP40-213ENST00000483216 PKP4Q99569 1192 aa5.87□□□□□ -1.47
USP40-213ENST00000483216 OLA1Q9NTK5 396 aaKnown RBP5.87□□□□□ -1.47
USP40-213ENST00000483216 ACSS1Q9NUB1 689 aaPredicted RBP5.87□□□□□ -1.47
USP40-213ENST00000483216 TMEM30AQ9NV96 361 aa5.87□□□□□ -1.47
USP40-213ENST00000483216 ORC3Q9UBD5 711 aaPredicted RBP5.87□□□□□ -1.47
USP40-213ENST00000483216 AASSQ9UDR5 926 aa5.87□□□□□ -1.47
USP40-213ENST00000483216 ACSL5Q9ULC5 683 aa5.87□□□□□ -1.47
USP40-213ENST00000483216 ADAM18Q9Y3Q7 739 aa5.87□□□□□ -1.47
USP40-213ENST00000483216 LOXL2Q9Y4K0 774 aa5.87□□□□□ -1.47
USP40-213ENST00000483216 MAU2Q9Y6X3 613 aa5.87□□□□□ -1.47
USP40-213ENST00000483216 CGNL1Q0VF96 1302 aa5.87□□□□□ -1.47
USP40-213ENST00000483216 ROCK1Q13464 1354 aa5.87□□□□□ -1.47
USP40-213ENST00000483216 DAPK1P53355 1430 aa5.87□□□□□ -1.47
USP40-213ENST00000483216 ZMYM4Q5VZL5 1548 aa5.87□□□□□ -1.47
USP40-213ENST00000483216 ERCC6L2Q5T890 1561 aa5.87□□□□□ -1.47
USP40-213ENST00000483216 ABCA8O94911 1581 aa5.86□□□□□ -1.47
USP40-213ENST00000483216 PLB1Q6P1J6 1458 aa5.86□□□□□ -1.47
USP40-213ENST00000483216 PDS5AQ29RF7 1337 aaKnown RBP5.86□□□□□ -1.47
USP40-213ENST00000483216 CNTNAP2Q9UHC6 1331 aa5.86□□□□□ -1.47
USP40-213ENST00000483216 PRAC2D3DTV9 90 aa5.86□□□□□ -1.47
USP40-213ENST00000483216 KRT36O76013 467 aa5.86□□□□□ -1.47
USP40-213ENST00000483216 DDNO94850 711 aaPredicted RBP5.86□□□□□ -1.47
USP40-213ENST00000483216 DDX58O95786 925 aaKnown RBP5.86□□□□□ -1.47
USP40-213ENST00000483216 CDH2P19022 906 aaPredicted RBP5.86□□□□□ -1.47
USP40-213ENST00000483216 MCM3P25205 808 aa5.86□□□□□ -1.47
USP40-213ENST00000483216 TMPOP42166 694 aaKnown RBP5.86□□□□□ -1.47
USP40-213ENST00000483216 FOXM1Q08050 763 aa5.86□□□□□ -1.47
USP40-213ENST00000483216 ZBTB17Q13105 803 aa5.86□□□□□ -1.47
USP40-213ENST00000483216 ZNF672Q499Z4 452 aaPredicted RBP5.86□□□□□ -1.47
USP40-213ENST00000483216 CDONQ4KMG0 1287 aa5.86□□□□□ -1.47
USP40-213ENST00000483216 SOWAHCQ53LP3 525 aaPredicted RBP5.86□□□□□ -1.47
USP40-213ENST00000483216 KCNT1Q5JUK3 1230 aa5.86□□□□□ -1.47
USP40-213ENST00000483216 CENPQQ7L2Z9 268 aaPredicted RBP5.86□□□□□ -1.47
USP40-213ENST00000483216 SFR1Q86XK3 245 aa5.86□□□□□ -1.47
USP40-213ENST00000483216 ARHGAP12Q8IWW6 846 aa5.86□□□□□ -1.47
USP40-213ENST00000483216 ZNF34Q8IZ26 560 aa5.86□□□□□ -1.47
USP40-213ENST00000483216 ADSSL1Q8N142 457 aa5.86□□□□□ -1.47
USP40-213ENST00000483216 BEST3Q8N1M1 668 aa5.86□□□□□ -1.47
USP40-213ENST00000483216 PCDH20Q8N6Y1 951 aaKnown RBP5.86□□□□□ -1.47
USP40-213ENST00000483216 FRMD1Q8N878 549 aa5.86□□□□□ -1.47
USP40-213ENST00000483216 PPHLN1Q8NEY8 458 aaKnown RBP5.86□□□□□ -1.47
USP40-213ENST00000483216 OR14L1PQ8NHC6 308 aa5.86□□□□□ -1.47
USP40-213ENST00000483216 UCMAQ8WVF2 138 aa5.86□□□□□ -1.47
USP40-213ENST00000483216 HDAC2Q92769 488 aaKnown RBP5.86□□□□□ -1.47
USP40-213ENST00000483216 EVA1AQ9H8M9 152 aa5.86□□□□□ -1.47
USP40-213ENST00000483216 RRP7BPQ9NSQ0 103 aa5.86□□□□□ -1.47
USP40-213ENST00000483216 DIAPH3Q9NSV4 1193 aa5.86□□□□□ -1.47
USP40-213ENST00000483216 EHD2Q9NZN4 543 aa5.86□□□□□ -1.47
USP40-213ENST00000483216 AMDHD2Q9Y303 409 aa5.86□□□□□ -1.47
USP40-213ENST00000483216 PSAT1Q9Y617 370 aa5.86□□□□□ -1.47
USP40-213ENST00000483216 PIAS3Q9Y6X2 628 aa5.86□□□□□ -1.47
USP40-213ENST00000483216 KDM6BO15054 1643 aa5.85□□□□□ -1.47
USP40-213ENST00000483216 PLEKHH2Q8IVE3 1493 aa5.85□□□□□ -1.47
USP40-213ENST00000483216 ABCC5O15440 1437 aa5.85□□□□□ -1.47
USP40-213ENST00000483216 EIF3AQ14152 1382 aaKnown RBP5.85□□□□□ -1.47
USP40-213ENST00000483216 FAM237BA0A1B0GVD1 139 aa5.85□□□□□ -1.47
USP40-213ENST00000483216 SPINT2O43291 252 aa5.85□□□□□ -1.47
USP40-213ENST00000483216 LDB3O75112 727 aa5.85□□□□□ -1.47
USP40-213ENST00000483216 SLC25A12O75746 678 aa5.85□□□□□ -1.47
USP40-213ENST00000483216 MLYCDO95822 493 aa5.85□□□□□ -1.47
USP40-213ENST00000483216 EGFP01133 1207 aa5.85□□□□□ -1.47
USP40-213ENST00000483216 EIF2S1P05198 315 aaKnown RBP5.85□□□□□ -1.47
USP40-213ENST00000483216 ZBED6P86452 979 aa5.85□□□□□ -1.47
USP40-213ENST00000483216 SLC20A2Q08357 652 aa5.85□□□□□ -1.47
USP40-213ENST00000483216 NIPAL4Q0D2K0 466 aa5.85□□□□□ -1.47
USP40-213ENST00000483216 TRNP1Q6NT89 227 aa5.85□□□□□ -1.47
USP40-213ENST00000483216 PXKQ7Z7A4 578 aa5.85□□□□□ -1.47
USP40-213ENST00000483216 FAM9BQ8IZU0 186 aa5.85□□□□□ -1.47
USP40-213ENST00000483216 C1orf87Q8N0U7 546 aa5.85□□□□□ -1.47
USP40-213ENST00000483216 KCNH5Q8NCM2 988 aa5.85□□□□□ -1.47
USP40-213ENST00000483216 ARHGEF2Q92974 986 aaKnown RBP5.85□□□□□ -1.47
USP40-213ENST00000483216 ABTB1Q969K4 478 aaPredicted RBP5.85□□□□□ -1.47
USP40-213ENST00000483216 ORAI1Q96D31 301 aa5.85□□□□□ -1.47
USP40-213ENST00000483216 GRAMD2BQ96HH9 432 aa5.85□□□□□ -1.47
USP40-213ENST00000483216 PDZD7Q9H5P4 517 aa5.85□□□□□ -1.47
USP40-213ENST00000483216 POLR1BQ9H9Y6 1135 aa5.85□□□□□ -1.47
USP40-213ENST00000483216 SLC28A3Q9HAS3 691 aa5.85□□□□□ -1.47
USP40-213ENST00000483216 RANGRFQ9HD47 186 aaPredicted RBP5.85□□□□□ -1.47
USP40-213ENST00000483216 KCNS2Q9ULS6 477 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms