RNA–Protein interactions for RNA: ENST00000474215.5

CKS1B-206, Transcript of CDC28 protein kinase regulatory subunit 1B, human

TSL 3

Gene CKS1B, Length 739 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CKS1B-206	ENST00000474215	FERMT1	Q9BQL6	677 aa		11.1	□□□□□ -0.63
CKS1B-206	ENST00000474215	HERPUD2	Q9BSE4	406 aa		11.1	□□□□□ -0.63
CKS1B-206	ENST00000474215	DESI2	Q9BSY9	194 aa		11.1	□□□□□ -0.63
CKS1B-206	ENST00000474215	SPATA16	Q9BXB7	569 aa		11.1	□□□□□ -0.63
CKS1B-206	ENST00000474215	LRRN3	Q9H3W5	708 aa		11.1	□□□□□ -0.63
CKS1B-206	ENST00000474215	C10orf88	Q9H8K7	445 aa		11.1	□□□□□ -0.63
CKS1B-206	ENST00000474215	ZNHIT2	Q9UHR6	403 aa		11.1	□□□□□ -0.63
CKS1B-206	ENST00000474215	AMFR	Q9UKV5	643 aa		11.1	□□□□□ -0.63
CKS1B-206	ENST00000474215	PLEKHM1	Q9Y4G2	1056 aa		11.1	□□□□□ -0.63
CKS1B-206	ENST00000474215	SPO11	Q9Y5K1	396 aa		11.1	□□□□□ -0.63
CKS1B-206	ENST00000474215	PKD1L2	Q7Z442	2459 aa		11.1	□□□□□ -0.63
CKS1B-206	ENST00000474215	RHPN2P1	A8MT19	583 aa		11.09	□□□□□ -0.63
CKS1B-206	ENST00000474215	GOLGA6L6	A8MZA4	724 aa		11.09	□□□□□ -0.63
CKS1B-206	ENST00000474215	MIF4GD	A9UHW6	222 aa	Known RBP	11.09	□□□□□ -0.63
CKS1B-206	ENST00000474215	TMX2-CTNND1	H3BSU7	103 aa		11.09	□□□□□ -0.63
CKS1B-206	ENST00000474215	AURKA	O14965	403 aa		11.09	□□□□□ -0.63
CKS1B-206	ENST00000474215	RRP8	O43159	456 aa	Known RBP	11.09	□□□□□ -0.63
CKS1B-206	ENST00000474215	TLX3	O43711	291 aa	Predicted RBP	11.09	□□□□□ -0.63
CKS1B-206	ENST00000474215	DNAJC6	O75061	913 aa		11.09	□□□□□ -0.63
CKS1B-206	ENST00000474215	ECEL1	O95672	775 aa		11.09	□□□□□ -0.63
CKS1B-206	ENST00000474215	SLC4A1	P02730	911 aa		11.09	□□□□□ -0.63
CKS1B-206	ENST00000474215	ACTR1B	P42025	376 aa		11.09	□□□□□ -0.63
CKS1B-206	ENST00000474215	MAZ	P56270	477 aa	Known RBP	11.09	□□□□□ -0.63
CKS1B-206	ENST00000474215	DCDC1	P59894	354 aa		11.09	□□□□□ -0.63
CKS1B-206	ENST00000474215	EIF3E	P60228	445 aa	Known RBP	11.09	□□□□□ -0.63
CKS1B-206	ENST00000474215	ACTR1A	P61163	376 aa		11.09	□□□□□ -0.63
CKS1B-206	ENST00000474215	OTUD4	Q01804	1114 aa	Known RBP	11.09	□□□□□ -0.63
CKS1B-206	ENST00000474215	MPP3	Q13368	585 aa		11.09	□□□□□ -0.63
CKS1B-206	ENST00000474215	TBC1D25	Q3MII6	688 aa		11.09	□□□□□ -0.63
CKS1B-206	ENST00000474215	SIRPB2	Q5JXA9	342 aa		11.09	□□□□□ -0.63
CKS1B-206	ENST00000474215	ALS2CL	Q60I27	953 aa		11.09	□□□□□ -0.63
CKS1B-206	ENST00000474215	AADACL2	Q6P093	401 aa		11.09	□□□□□ -0.63
CKS1B-206	ENST00000474215	SPRED1	Q7Z699	444 aa		11.09	□□□□□ -0.63
CKS1B-206	ENST00000474215	ARL14	Q8N4G2	192 aa		11.09	□□□□□ -0.63
CKS1B-206	ENST00000474215	TRAM1L1	Q8N609	369 aa		11.09	□□□□□ -0.63
CKS1B-206	ENST00000474215	UBL4B	Q8N7F7	174 aa		11.09	□□□□□ -0.63
CKS1B-206	ENST00000474215	SNIP1	Q8TAD8	396 aa	Known RBP	11.09	□□□□□ -0.63
CKS1B-206	ENST00000474215	MRGPRX2	Q96LB1	330 aa		11.09	□□□□□ -0.63
CKS1B-206	ENST00000474215	ZNF578	Q96N58	590 aa	Predicted RBP	11.09	□□□□□ -0.63
CKS1B-206	ENST00000474215	DCBLD2	Q96PD2	775 aa		11.09	□□□□□ -0.63
CKS1B-206	ENST00000474215	ZSCAN5A	Q9BUG6	496 aa		11.09	□□□□□ -0.63
CKS1B-206	ENST00000474215	TRABD	Q9H4I3	376 aa		11.09	□□□□□ -0.63
CKS1B-206	ENST00000474215	RMI1	Q9H9A7	625 aa		11.09	□□□□□ -0.63
CKS1B-206	ENST00000474215	TRIM39	Q9HCM9	518 aa		11.09	□□□□□ -0.63
CKS1B-206	ENST00000474215	NFKBIL1	Q9UBC1	381 aa	Predicted RBP	11.09	□□□□□ -0.63
CKS1B-206	ENST00000474215	TRIM10	Q9UDY6	481 aa		11.09	□□□□□ -0.63
CKS1B-206	ENST00000474215	RSPH14	Q9UHP6	348 aa		11.09	□□□□□ -0.63
CKS1B-206	ENST00000474215	LHX6	Q9UPM6	363 aa		11.09	□□□□□ -0.63
CKS1B-206	ENST00000474215	SATB2	Q9UPW6	733 aa		11.09	□□□□□ -0.63
CKS1B-206	ENST00000474215	OAS3	Q9Y6K5	1087 aa	Known RBP	11.09	□□□□□ -0.63
CKS1B-206	ENST00000474215	MYLK	Q15746	1914 aa		11.09	□□□□□ -0.63
CKS1B-206	ENST00000474215		A0A0U1RQJ8	604 aa		11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215		A0A1W2PNU3	283 aa	Predicted RBP	11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215		D6RAR5	112 aa		11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215		F5H423	210 aa	Predicted RBP	11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	ZW10	O43264	779 aa		11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	B4GAT1	O43505	415 aa		11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	ANXA9	O76027	345 aa		11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	STK10	O94804	968 aa	Known RBP	11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	SLC25A14	O95258	325 aa	Predicted RBP	11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	RBP3	P10745	1247 aa		11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	BPI	P17213	487 aa		11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	RBMS1	P29558	406 aa	Known RBP	11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	HMGCL	P35914	325 aa		11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	CHRNA4	P43681	627 aa		11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	PDX1	P52945	283 aa		11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	ERVPABLB-1	P60509	514 aa		11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	B4GALNT1	Q00973	533 aa		11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	BIRC2	Q13490	618 aa		11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	SLC1A5	Q15758	541 aa		11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	COL28A1	Q2UY09	1125 aa		11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	C3orf38	Q5JPI3	329 aa		11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	ZNF569	Q5MCW4	686 aa		11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	PDPK2P	Q6A1A2	396 aa		11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	ITPRIPL1	Q6GPH6	555 aa		11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	DARS2	Q6PI48	645 aa	Known RBP	11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	IGF2-AS	Q6U949	168 aa		11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	LRRC69	Q6ZNQ3	347 aa		11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	CHST15	Q7LFX5	561 aa	Predicted RBP	11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	ZNF438	Q7Z4V0	828 aa		11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	B3GNT8	Q7Z7M8	397 aa		11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	CDKL3	Q8IVW4	592 aa	Predicted RBP	11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	NAGS	Q8N159	534 aa		11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	SLC25A41	Q8N5S1	370 aa		11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	RNF10	Q8N5U6	811 aa	Known RBP	11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	IPMK	Q8NFU5	416 aa		11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	WDR36	Q8NI36	951 aa	Known RBP	11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	PATE1	Q8WXA2	126 aa		11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	TMEM74	Q96NL1	305 aa		11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	SLC46A1	Q96NT5	459 aa		11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	PLEKHG4B	Q96PX9	1271 aa		11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	FAM118B	Q9BPY3	351 aa		11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	GBA3	Q9H227	469 aa		11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	CARD9	Q9H257	536 aa		11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	BPIFA1	Q9NP55	256 aa		11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	HACD3	Q9P035	362 aa		11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	ATXN10	Q9UBB4	475 aa		11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	PRKAB1	Q9Y478	270 aa		11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	PCDHGA8	Q9Y5G5	932 aa		11.08	□□□□□ -0.64
CKS1B-206	ENST00000474215	ASXL3	Q9C0F0	2248 aa		11.08	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms