RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	ADCY8	P40145	1251 aa		11.45	□□□□□ -0.58
CPNE1-222	ENST00000473373	GEM	P55040	296 aa		11.45	□□□□□ -0.58
CPNE1-222	ENST00000473373	WNT3A	P56704	352 aa		11.45	□□□□□ -0.58
CPNE1-222	ENST00000473373	ADCY2	Q08462	1091 aa		11.45	□□□□□ -0.58
CPNE1-222	ENST00000473373	MPP3	Q13368	585 aa		11.45	□□□□□ -0.58
CPNE1-222	ENST00000473373	XRCC4	Q13426	336 aa		11.45	□□□□□ -0.58
CPNE1-222	ENST00000473373	GTF2H3	Q13889	308 aa		11.45	□□□□□ -0.58
CPNE1-222	ENST00000473373	NOMO1	Q15155	1222 aa		11.45	□□□□□ -0.58
CPNE1-222	ENST00000473373	SLC14A2	Q15849	920 aa		11.45	□□□□□ -0.58
CPNE1-222	ENST00000473373	KCTD16	Q68DU8	428 aa		11.45	□□□□□ -0.58
CPNE1-222	ENST00000473373	CHST15	Q7LFX5	561 aa	Predicted RBP	11.45	□□□□□ -0.58
CPNE1-222	ENST00000473373	GLT6D1	Q7Z4J2	308 aa		11.45	□□□□□ -0.58
CPNE1-222	ENST00000473373	PHYKPL	Q8IUZ5	450 aa		11.45	□□□□□ -0.58
CPNE1-222	ENST00000473373	CCNJL	Q8IV13	435 aa		11.45	□□□□□ -0.58
CPNE1-222	ENST00000473373	ZNF567	Q8N184	647 aa		11.45	□□□□□ -0.58
CPNE1-222	ENST00000473373	DCBLD1	Q8N8Z6	715 aa		11.45	□□□□□ -0.58
CPNE1-222	ENST00000473373	TTC13	Q8NBP0	860 aa		11.45	□□□□□ -0.58
CPNE1-222	ENST00000473373	TTC25	Q96NG3	672 aa		11.45	□□□□□ -0.58
CPNE1-222	ENST00000473373	LYSMD1	Q96S90	227 aa		11.45	□□□□□ -0.58
CPNE1-222	ENST00000473373	AGAP2	Q99490	1192 aa		11.45	□□□□□ -0.58
CPNE1-222	ENST00000473373	ZSCAN5A	Q9BUG6	496 aa		11.45	□□□□□ -0.58
CPNE1-222	ENST00000473373	STRADB	Q9C0K7	418 aa		11.45	□□□□□ -0.58
CPNE1-222	ENST00000473373	OSGEPL1	Q9H4B0	414 aa		11.45	□□□□□ -0.58
CPNE1-222	ENST00000473373	C10orf88	Q9H8K7	445 aa		11.45	□□□□□ -0.58
CPNE1-222	ENST00000473373	MAGEE1	Q9HCI5	957 aa		11.45	□□□□□ -0.58
CPNE1-222	ENST00000473373	EPB41L5	Q9HCM4	733 aa		11.45	□□□□□ -0.58
CPNE1-222	ENST00000473373	BPIFA1	Q9NP55	256 aa		11.45	□□□□□ -0.58
CPNE1-222	ENST00000473373	TRNAU1AP	Q9NX07	287 aa	Known RBP	11.45	□□□□□ -0.58
CPNE1-222	ENST00000473373	TAAR2	Q9P1P5	351 aa		11.45	□□□□□ -0.58
CPNE1-222	ENST00000473373	LRIT1	Q9P2V4	623 aa		11.45	□□□□□ -0.58
CPNE1-222	ENST00000473373	PKP3	Q9Y446	797 aa		11.45	□□□□□ -0.58
CPNE1-222	ENST00000473373		U3KQA8	63 aa		11.45	□□□□□ -0.58
CPNE1-222	ENST00000473373	RGSL1	A5PLK6	1076 aa		11.44	□□□□□ -0.58
CPNE1-222	ENST00000473373	BRINP1	O60477	761 aa		11.44	□□□□□ -0.58
CPNE1-222	ENST00000473373	SNX2	O60749	519 aa		11.44	□□□□□ -0.58
CPNE1-222	ENST00000473373	ZNF189	O75820	626 aa	Predicted RBP	11.44	□□□□□ -0.58
CPNE1-222	ENST00000473373	IVL	P07476	585 aa		11.44	□□□□□ -0.58
CPNE1-222	ENST00000473373	ALDH4A1	P30038	563 aa		11.44	□□□□□ -0.58
CPNE1-222	ENST00000473373	MAZ	P56270	477 aa	Known RBP	11.44	□□□□□ -0.58
CPNE1-222	ENST00000473373	CCL7	P80098	99 aa		11.44	□□□□□ -0.58
CPNE1-222	ENST00000473373	CTBS	Q01459	385 aa		11.44	□□□□□ -0.58
CPNE1-222	ENST00000473373	WASHC5	Q12768	1159 aa		11.44	□□□□□ -0.58
CPNE1-222	ENST00000473373	CAMK2B	Q13554	666 aa		11.44	□□□□□ -0.58
CPNE1-222	ENST00000473373	IHH	Q14623	411 aa		11.44	□□□□□ -0.58
CPNE1-222	ENST00000473373	TAZ	Q16635	292 aa		11.44	□□□□□ -0.58
CPNE1-222	ENST00000473373	INSC	Q1MX18	579 aa		11.44	□□□□□ -0.58
CPNE1-222	ENST00000473373	ISX	Q2M1V0	245 aa		11.44	□□□□□ -0.58
CPNE1-222	ENST00000473373	AMZ1	Q400G9	498 aa		11.44	□□□□□ -0.58
CPNE1-222	ENST00000473373	AADACL2	Q6P093	401 aa		11.44	□□□□□ -0.58
CPNE1-222	ENST00000473373	ARHGEF18	Q6ZSZ5	1173 aa		11.44	□□□□□ -0.58
CPNE1-222	ENST00000473373	RAVER1	Q8IY67	606 aa	Known RBP	11.44	□□□□□ -0.58
CPNE1-222	ENST00000473373	LSMEM2	Q8N112	164 aa		11.44	□□□□□ -0.58
CPNE1-222	ENST00000473373	CCDC112	Q8NEF3	446 aa		11.44	□□□□□ -0.58
CPNE1-222	ENST00000473373	AHCYL2	Q96HN2	611 aa	Known RBP	11.44	□□□□□ -0.58
CPNE1-222	ENST00000473373	ALS2CR12	Q96Q35	445 aa		11.44	□□□□□ -0.58
CPNE1-222	ENST00000473373	FCRL5	Q96RD9	977 aa		11.44	□□□□□ -0.58
CPNE1-222	ENST00000473373	FICD	Q9BVA6	458 aa		11.44	□□□□□ -0.58
CPNE1-222	ENST00000473373	LRRN3	Q9H3W5	708 aa		11.44	□□□□□ -0.58
CPNE1-222	ENST00000473373	ARFGAP3	Q9NP61	516 aa		11.44	□□□□□ -0.58
CPNE1-222	ENST00000473373	SATB2	Q9UPW6	733 aa		11.44	□□□□□ -0.58
CPNE1-222	ENST00000473373	SLC17A4	Q9Y2C5	497 aa		11.44	□□□□□ -0.58
CPNE1-222	ENST00000473373	PRKAB1	Q9Y478	270 aa		11.44	□□□□□ -0.58
CPNE1-222	ENST00000473373	ZNF106	Q9H2Y7	1883 aa	Known RBP	11.43	□□□□□ -0.58
CPNE1-222	ENST00000473373	TRBV23OR9-2	A0A075B6M9	112 aa		11.43	□□□□□ -0.58
CPNE1-222	ENST00000473373	FADS2P1	A8MWK0	482 aa		11.43	□□□□□ -0.58
CPNE1-222	ENST00000473373	ARHGAP6	O43182	974 aa		11.43	□□□□□ -0.58
CPNE1-222	ENST00000473373	ECEL1	O95672	775 aa		11.43	□□□□□ -0.58
CPNE1-222	ENST00000473373	FGF1	P05230	155 aa		11.43	□□□□□ -0.58
CPNE1-222	ENST00000473373	PYGM	P11217	842 aa		11.43	□□□□□ -0.58
CPNE1-222	ENST00000473373	ACP5	P13686	325 aa		11.43	□□□□□ -0.58
CPNE1-222	ENST00000473373	SLC2A4	P14672	509 aa		11.43	□□□□□ -0.58
CPNE1-222	ENST00000473373	HLA-DPA1	P20036	260 aa		11.43	□□□□□ -0.58
CPNE1-222	ENST00000473373	CD68	P34810	354 aa	Predicted RBP	11.43	□□□□□ -0.58
CPNE1-222	ENST00000473373	PLA2G4E	Q3MJ16	856 aa		11.43	□□□□□ -0.58
CPNE1-222	ENST00000473373	SIRPB2	Q5JXA9	342 aa		11.43	□□□□□ -0.58
CPNE1-222	ENST00000473373	PHF19	Q5T6S3	580 aa		11.43	□□□□□ -0.58
CPNE1-222	ENST00000473373	HENMT1	Q5T8I9	393 aa	Known RBP	11.43	□□□□□ -0.58
CPNE1-222	ENST00000473373	CRTC3	Q6UUV7	619 aa		11.43	□□□□□ -0.58
CPNE1-222	ENST00000473373	NLRP8	Q86W28	1048 aa		11.43	□□□□□ -0.58
CPNE1-222	ENST00000473373	JAML	Q86YT9	394 aa		11.43	□□□□□ -0.58
CPNE1-222	ENST00000473373	TMEM139	Q8IV31	216 aa		11.43	□□□□□ -0.58
CPNE1-222	ENST00000473373	CACTIN-AS1	Q8N1I8	211 aa		11.43	□□□□□ -0.58
CPNE1-222	ENST00000473373	CBARP	Q8N350	705 aa	Predicted RBP	11.43	□□□□□ -0.58
CPNE1-222	ENST00000473373	GPR156	Q8NFN8	814 aa		11.43	□□□□□ -0.58
CPNE1-222	ENST00000473373	GPBAR1	Q8TDU6	330 aa		11.43	□□□□□ -0.58
CPNE1-222	ENST00000473373	ATXN7L3B	Q96GX2	97 aa		11.43	□□□□□ -0.58
CPNE1-222	ENST00000473373	NAF1	Q96HR8	494 aa	Known RBP	11.43	□□□□□ -0.58
CPNE1-222	ENST00000473373	TMEM74	Q96NL1	305 aa		11.43	□□□□□ -0.58
CPNE1-222	ENST00000473373	PPP1R2P1	Q96PQ5	205 aa		11.43	□□□□□ -0.58
CPNE1-222	ENST00000473373	TRIB3	Q96RU7	358 aa		11.43	□□□□□ -0.58
CPNE1-222	ENST00000473373	OR2AG1	Q9H205	316 aa		11.43	□□□□□ -0.58
CPNE1-222	ENST00000473373	GBA3	Q9H227	469 aa		11.43	□□□□□ -0.58
CPNE1-222	ENST00000473373	TRABD	Q9H4I3	376 aa		11.43	□□□□□ -0.58
CPNE1-222	ENST00000473373	SPATS2L	Q9NUQ6	558 aa	Known RBP	11.43	□□□□□ -0.58
CPNE1-222	ENST00000473373	HACD3	Q9P035	362 aa		11.43	□□□□□ -0.58
CPNE1-222	ENST00000473373	AKAP7	Q9P0M2	348 aa	Predicted RBP	11.43	□□□□□ -0.58
CPNE1-222	ENST00000473373	VPS18	Q9P253	973 aa		11.43	□□□□□ -0.58
CPNE1-222	ENST00000473373	EFR3B	Q9Y2G0	817 aa		11.43	□□□□□ -0.58
CPNE1-222	ENST00000473373	AAR2	Q9Y312	384 aa	Known RBP	11.43	□□□□□ -0.58
CPNE1-222	ENST00000473373	RNF215	Q9Y6U7	377 aa		11.43	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms