RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 C12orf50Q8NA57 414 aaPredicted RBP13.26□□□□□ -0.29
COL6A3-209ENST00000472056 CELF1Q92879 486 aaKnown RBP13.26□□□□□ -0.29
COL6A3-209ENST00000472056 AXIN2Q9Y2T1 843 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 RPL36Q9Y3U8 105 aaKnown RBP13.26□□□□□ -0.29
COL6A3-209ENST00000472056 FER1L4A9Z1Z3 1794 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 MBL2P11226 248 aaPredicted RBP13.26□□□□□ -0.29
COL6A3-209ENST00000472056 LPOP22079 712 aaPredicted RBP13.26□□□□□ -0.29
COL6A3-209ENST00000472056 MAGEA8P43361 318 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 FOXM1Q08050 763 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 BOP1Q14137 746 aaKnown RBP13.26□□□□□ -0.29
COL6A3-209ENST00000472056 ATP13A4Q4VNC1 1196 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 EIPR1Q53HC9 387 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 ZNF517Q6ZMY9 492 aaPredicted RBP13.26□□□□□ -0.29
COL6A3-209ENST00000472056 ZNF34Q8IZ26 560 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 CARNMT1Q8N4J0 409 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 ITPKCQ96DU7 683 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 DNAJC1Q96KC8 554 aaKnown RBP13.26□□□□□ -0.29
COL6A3-209ENST00000472056 MCIDASD6RGH6 385 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 YBX3P16989 372 aaKnown RBP eCLIP13.26□□□□□ -0.29
COL6A3-209ENST00000472056 EPORP19235 508 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 PPP3R1P63098 170 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 TRAM1Q15629 374 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 SMYD5Q6GMV2 418 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 ZC3H7AQ8IWR0 971 aaKnown RBP13.26□□□□□ -0.29
COL6A3-209ENST00000472056 HDDC3Q8N4P3 179 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 DENND6BQ8NEG7 585 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 GAL3ST3Q96A11 431 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 UROC1Q96N76 676 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 SULT2A1Q06520 285 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 ZNF311Q5JNZ3 666 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 ADGRD1Q6QNK2 874 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 ZNF730Q6ZMV8 503 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 ZCCHC23Q6ZST2 131 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 STRADAQ7RTN6 431 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 RANBP3LQ86VV4 465 aaPredicted RBP13.25□□□□□ -0.29
COL6A3-209ENST00000472056 MAP4K3Q8IVH8 894 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 RBM15BQ8NDT2 890 aaKnown RBP13.25□□□□□ -0.29
COL6A3-209ENST00000472056 RAET1EQ8TD07 263 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 LHX5Q9H2C1 402 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 GLS2Q9UI32 602 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 CLEC4AQ9UMR7 237 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 ARPC4-TTLL3A0A0A6YYG9 625 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 NUSAP1Q9BXS6 441 aaKnown RBP13.25□□□□□ -0.29
COL6A3-209ENST00000472056 FBXO6Q9NRD1 293 aaPredicted RBP13.25□□□□□ -0.29
COL6A3-209ENST00000472056 EML1O00423 815 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 NPHS1O60500 1241 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 KERAO60938 352 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 PRAMEF1O95521 474 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 PRH1P02810 166 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 IRF1P10914 325 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 ACADMP11310 421 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 SLC15A1P46059 708 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 APTXQ7Z2E3 356 aaKnown RBP13.25□□□□□ -0.29
COL6A3-209ENST00000472056 SEPT12Q8IYM1 358 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 PRELID2Q8N945 189 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 DRAXINQ8NBI3 349 aaPredicted RBP13.25□□□□□ -0.29
COL6A3-209ENST00000472056 RNF157Q96PX1 679 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 PCDHB5Q9Y5E4 795 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 PRAMEF22A3QJZ6 481 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 CYP27B1O15528 508 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 RBMXL2O75526 392 aaKnown RBP13.25□□□□□ -0.29
COL6A3-209ENST00000472056 SHBGP04278 402 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 IFNW1P05000 195 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 RAP2AP10114 183 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 MAPK3P27361 379 aaPredicted RBP13.25□□□□□ -0.29
COL6A3-209ENST00000472056 ECHS1P30084 290 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 GNPDA1P46926 289 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 OR2B6P58173 313 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 ZCCHC12Q6PEW1 402 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 GET4Q7L5D6 327 aaPredicted RBP13.25□□□□□ -0.29
COL6A3-209ENST00000472056 KCTD7Q96MP8 289 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 ACTR6Q9GZN1 396 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 TMEM5Q9Y2B1 443 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 GAKO14976 1311 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 TRIM3O75382 744 aaPredicted RBP13.25□□□□□ -0.29
COL6A3-209ENST00000472056 LTKP29376 864 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 SLC9A3P48764 834 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 SREBF2Q12772 1141 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 FAM76BQ5HYJ3 339 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 BRMS1LQ5PSV4 323 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 UNC5AQ6ZN44 842 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 ZNF285Q96NJ3 590 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 TMEM168Q9H0V1 697 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 LRRC42Q9Y546 428 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 SPATA31A3Q5VYP0 1347 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 C5orf60A6NFR6 353 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 CYP3A4P08684 503 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 TACSTD2P09758 323 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 NDST1P52848 882 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 CAPZA1P52907 286 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 MAZP56270 477 aaKnown RBP13.25□□□□□ -0.29
COL6A3-209ENST00000472056 ESPL1Q14674 2120 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 C4orf46Q504U0 113 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 GPAT3Q53EU6 434 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 BAIAP2L2Q6UXY1 529 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 SYNE4Q8N205 404 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 PTGR2Q8N8N7 351 aaPredicted RBP13.25□□□□□ -0.29
COL6A3-209ENST00000472056 ASB9Q96DX5 294 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 KCTD5Q9NXV2 234 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 DNTTP04053 509 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms