RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 TBR1Q16650 682 aa13.17□□□□□ -0.3
CPSF4-210ENST00000469897 ZNF648Q5T619 568 aaPredicted RBP13.17□□□□□ -0.3
CPSF4-210ENST00000469897 IYDQ6PHW0 289 aa13.17□□□□□ -0.3
CPSF4-210ENST00000469897 SFRP1Q8N474 314 aa13.17□□□□□ -0.3
CPSF4-210ENST00000469897 AGBL5Q8NDL9 886 aa13.17□□□□□ -0.3
CPSF4-210ENST00000469897 CCHCR1Q8TD31 782 aa13.17□□□□□ -0.3
CPSF4-210ENST00000469897 ART4Q93070 314 aa13.17□□□□□ -0.3
CPSF4-210ENST00000469897 NKD1Q969G9 470 aa13.17□□□□□ -0.3
CPSF4-210ENST00000469897 HDAC11Q96DB2 347 aa13.17□□□□□ -0.3
CPSF4-210ENST00000469897 AHCYL2Q96HN2 611 aaKnown RBP13.17□□□□□ -0.3
CPSF4-210ENST00000469897 LYSMD1Q96S90 227 aa13.17□□□□□ -0.3
CPSF4-210ENST00000469897 XPO4Q9C0E2 1151 aaKnown RBP13.17□□□□□ -0.3
CPSF4-210ENST00000469897 B3GNT4Q9C0J1 378 aa13.17□□□□□ -0.3
CPSF4-210ENST00000469897 SLC39A1Q9NY26 324 aa13.17□□□□□ -0.3
CPSF4-210ENST00000469897 TBC1D29Q9UFV1 150 aa13.17□□□□□ -0.3
CPSF4-210ENST00000469897 DNPEPQ9ULA0 475 aa13.17□□□□□ -0.3
CPSF4-210ENST00000469897 RPL26L1Q9UNX3 145 aaKnown RBP13.17□□□□□ -0.3
CPSF4-210ENST00000469897 KCNK6Q9Y257 313 aa13.17□□□□□ -0.3
CPSF4-210ENST00000469897 PCDHGA4Q9Y5G9 962 aa13.17□□□□□ -0.3
CPSF4-210ENST00000469897 HEY1Q9Y5J3 304 aa13.17□□□□□ -0.3
CPSF4-210ENST00000469897 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.17□□□□□ -0.3
CPSF4-210ENST00000469897 MGAQ8IWI9 3026 aa13.17□□□□□ -0.3
CPSF4-210ENST00000469897 PTPRQQ9UMZ3 2332 aa13.17□□□□□ -0.3
CPSF4-210ENST00000469897 EFCAB7A8K855 629 aa13.16□□□□□ -0.3
CPSF4-210ENST00000469897 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.16□□□□□ -0.3
CPSF4-210ENST00000469897 STMND1H3BQB6 276 aa13.16□□□□□ -0.3
CPSF4-210ENST00000469897 CSF2RBP32927 897 aa13.16□□□□□ -0.3
CPSF4-210ENST00000469897 FASLGP48023 281 aa13.16□□□□□ -0.3
CPSF4-210ENST00000469897 GPLD1P80108 840 aa13.16□□□□□ -0.3
CPSF4-210ENST00000469897 AP1B1Q10567 949 aa13.16□□□□□ -0.3
CPSF4-210ENST00000469897 ZBTB17Q13105 803 aa13.16□□□□□ -0.3
CPSF4-210ENST00000469897 GALNT3Q14435 633 aa13.16□□□□□ -0.3
CPSF4-210ENST00000469897 ASTE1Q2TB18 679 aaPredicted RBP13.16□□□□□ -0.3
CPSF4-210ENST00000469897 SNAP47Q5SQN1 464 aa13.16□□□□□ -0.3
CPSF4-210ENST00000469897 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.16□□□□□ -0.3
CPSF4-210ENST00000469897 HENMT1Q5T8I9 393 aaKnown RBP13.16□□□□□ -0.3
CPSF4-210ENST00000469897 B4GALNT4Q76KP1 1039 aa13.16□□□□□ -0.3
CPSF4-210ENST00000469897 RAVER1Q8IY67 606 aaKnown RBP13.16□□□□□ -0.3
CPSF4-210ENST00000469897 OR8K1Q8NGG5 319 aa13.16□□□□□ -0.3
CPSF4-210ENST00000469897 SLC35G2Q8TBE7 412 aa13.16□□□□□ -0.3
CPSF4-210ENST00000469897 NCSTNQ92542 709 aa13.16□□□□□ -0.3
CPSF4-210ENST00000469897 EID2BQ96D98 161 aa13.16□□□□□ -0.3
CPSF4-210ENST00000469897 DPYSL5Q9BPU6 564 aa13.16□□□□□ -0.3
CPSF4-210ENST00000469897 MAK16Q9BXY0 300 aaKnown RBP13.16□□□□□ -0.3
CPSF4-210ENST00000469897 ADGRE3Q9BY15 652 aa13.16□□□□□ -0.3
CPSF4-210ENST00000469897 CEP41Q9BYV8 373 aa13.16□□□□□ -0.3
CPSF4-210ENST00000469897 ARFGAP3Q9NP61 516 aa13.16□□□□□ -0.3
CPSF4-210ENST00000469897 PKD2L2Q9NZM6 624 aa13.16□□□□□ -0.3
CPSF4-210ENST00000469897 VPS18Q9P253 973 aa13.16□□□□□ -0.3
CPSF4-210ENST00000469897 PCDHGA3Q9Y5H0 932 aa13.16□□□□□ -0.3
CPSF4-210ENST00000469897 B3GALT1Q9Y5Z6 326 aa13.16□□□□□ -0.3
CPSF4-210ENST00000469897 LRRD1A4D1F6 860 aa13.15□□□□□ -0.3
CPSF4-210ENST00000469897 RGSL1A5PLK6 1076 aa13.15□□□□□ -0.3
CPSF4-210ENST00000469897 GRID2O43424 1007 aa13.15□□□□□ -0.3
CPSF4-210ENST00000469897 SLC28A2O43868 658 aa13.15□□□□□ -0.3
CPSF4-210ENST00000469897 ITGB2P05107 769 aa13.15□□□□□ -0.3
CPSF4-210ENST00000469897 TMEM253P0C7T8 217 aa13.15□□□□□ -0.3
CPSF4-210ENST00000469897 FAM87AP0C7U9 286 aa13.15□□□□□ -0.3
CPSF4-210ENST00000469897 PIRTP0C851 137 aa13.15□□□□□ -0.3
CPSF4-210ENST00000469897 THRAP10827 490 aa13.15□□□□□ -0.3
CPSF4-210ENST00000469897 ACP5P13686 325 aa13.15□□□□□ -0.3
CPSF4-210ENST00000469897 UGT1A3P35503 534 aa13.15□□□□□ -0.3
CPSF4-210ENST00000469897 HHEXQ03014 270 aa13.15□□□□□ -0.3
CPSF4-210ENST00000469897 PPIDQ08752 370 aaKnown RBP13.15□□□□□ -0.3
CPSF4-210ENST00000469897 ANKS6Q68DC2 871 aa13.15□□□□□ -0.3
CPSF4-210ENST00000469897 XKR5Q6UX68 686 aa13.15□□□□□ -0.3
CPSF4-210ENST00000469897 NPNTQ6UXI9 565 aa13.15□□□□□ -0.3
CPSF4-210ENST00000469897 LYSMD3Q7Z3D4 306 aa13.15□□□□□ -0.3
CPSF4-210ENST00000469897 FAM129CQ86XR2 697 aa13.15□□□□□ -0.3
CPSF4-210ENST00000469897 PLD5Q8N7P1 536 aa13.15□□□□□ -0.3
CPSF4-210ENST00000469897 OR10G6Q8NH81 332 aa13.15□□□□□ -0.3
CPSF4-210ENST00000469897 HTR3CQ8WXA8 447 aa13.15□□□□□ -0.3
CPSF4-210ENST00000469897 RNF25Q96BH1 459 aaPredicted RBP13.15□□□□□ -0.3
CPSF4-210ENST00000469897 ZNF830Q96NB3 372 aaPredicted RBP13.15□□□□□ -0.3
CPSF4-210ENST00000469897 AGAP3Q96P47 875 aa13.15□□□□□ -0.3
CPSF4-210ENST00000469897 CHP1Q99653 195 aa13.15□□□□□ -0.3
CPSF4-210ENST00000469897 CTRCQ99895 268 aa13.15□□□□□ -0.3
CPSF4-210ENST00000469897 ZMYND15Q9H091 742 aa13.15□□□□□ -0.3
CPSF4-210ENST00000469897 DEF6Q9H4E7 631 aa13.15□□□□□ -0.3
CPSF4-210ENST00000469897 ZFYVE1Q9HBF4 777 aa13.15□□□□□ -0.3
CPSF4-210ENST00000469897 PDP2Q9P2J9 529 aa13.15□□□□□ -0.3
CPSF4-210ENST00000469897 ATXN10Q9UBB4 475 aa13.15□□□□□ -0.3
CPSF4-210ENST00000469897 LCMT1Q9UIC8 334 aa13.15□□□□□ -0.3
CPSF4-210ENST00000469897 SHOC2Q9UQ13 582 aa13.15□□□□□ -0.3
CPSF4-210ENST00000469897 C3orf70A6NLC5 250 aaPredicted RBP13.14□□□□□ -0.31
CPSF4-210ENST00000469897 B4E171 279 aa13.14□□□□□ -0.31
CPSF4-210ENST00000469897 AKR1B10O60218 316 aa13.14□□□□□ -0.31
CPSF4-210ENST00000469897 NUAK1O60285 661 aa13.14□□□□□ -0.31
CPSF4-210ENST00000469897 ZNF8P17098 575 aaPredicted RBP13.14□□□□□ -0.31
CPSF4-210ENST00000469897 ITGB6P18564 788 aa13.14□□□□□ -0.31
CPSF4-210ENST00000469897 MAN1A1P33908 653 aa13.14□□□□□ -0.31
CPSF4-210ENST00000469897 TSPAN7P41732 249 aa13.14□□□□□ -0.31
CPSF4-210ENST00000469897 MAPK9P45984 424 aa13.14□□□□□ -0.31
CPSF4-210ENST00000469897 IFI35P80217 286 aaPredicted RBP13.14□□□□□ -0.31
CPSF4-210ENST00000469897 PCSK7Q16549 785 aa13.14□□□□□ -0.31
CPSF4-210ENST00000469897 DCAF12Q5T6F0 453 aa13.14□□□□□ -0.31
CPSF4-210ENST00000469897 ALS2CLQ60I27 953 aa13.14□□□□□ -0.31
CPSF4-210ENST00000469897 SLC9A4Q6AI14 798 aa13.14□□□□□ -0.31
CPSF4-210ENST00000469897 TMC3Q7Z5M5 1100 aa13.14□□□□□ -0.31
CPSF4-210ENST00000469897 SLC9B2Q86UD5 537 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms