RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 ZKSCAN4Q969J2 545 aaPredicted RBP4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 SGK3Q96BR1 496 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 INTS12Q96CB8 462 aaKnown RBP4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 MRPL38Q96DV4 380 aaKnown RBP4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 APOPT1Q96IL0 206 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 C7orf34Q96L11 122 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 CCDC17Q96LX7 622 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 FYTTD1Q96QD9 318 aaKnown RBP4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 KCNK16Q96T55 309 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 FUZQ9BT04 418 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 TUBB2BQ9BVA1 445 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 KIFC3Q9BVG8 833 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 NUP85Q9BW27 656 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 SLC5A7Q9GZV3 580 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 MS4A7Q9GZW8 240 aaPredicted RBP4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 DCTPP1Q9H773 170 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 PSTPIP2Q9H939 334 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 NOD2Q9HC29 1040 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 GBA2Q9HCG7 927 aaPredicted RBP4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 PFDN4Q9NQP4 134 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 ASIC5Q9NY37 505 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 CYP39A1Q9NYL5 469 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 ZNF580Q9UK33 172 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 AMFRQ9UKV5 643 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 ITGA11Q9UKX5 1188 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 ZMYND8Q9ULU4 1186 aaPredicted RBP4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 CORO1CQ9ULV4 474 aaPredicted RBP4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 CHKBQ9Y259 395 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 FAM205AQ6ZU69 1335 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 MAGEB16A2A368 324 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 DENND3A2RUS2 1198 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 ZSCAN5BA6NJL1 495 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 GLOD5A6NK44 160 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 ZSCAN9O15535 394 aaPredicted RBP4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 NUDT21O43809 227 aaKnown RBP4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 NIPSNAP2O75323 286 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 RNF8O76064 485 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 CCNDBP1O95273 360 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 BAG4O95429 457 aaKnown RBP4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 DIRAS3O95661 229 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 KRT14P02533 472 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 TUBBP07437 444 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 CYP19A1P11511 503 aaPredicted RBP4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 NCF1P14598 390 aaPredicted RBP4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 EN2P19622 333 aaPredicted RBP4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 ACAT1P24752 427 aaKnown RBP4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 HOXD9P28356 352 aaPredicted RBP4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 CCKBRP32239 447 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 RPL9P32969 192 aaKnown RBP4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 BMI1P35226 326 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 MDH1P40925 334 aaKnown RBP4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 NPY4RP50391 375 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 CLCNKAP51800 687 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 GTF2A1P52655 376 aaPredicted RBP4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 METAP1P53582 386 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 COPB1P53618 953 aaKnown RBP4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 WNT3P56703 355 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 HUNKP57058 714 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 MAP3K7CLP57077 242 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 LINC00205P59089 165 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 B2MP61769 119 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 SUMO2P61956 95 aaKnown RBP4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 TUBB4BP68371 445 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 NOP14P78316 857 aaKnown RBP4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 RPP38P78345 283 aaKnown RBP4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 PMP22Q01453 160 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 THOC5Q13769 683 aaKnown RBP4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 DDX39BQ13838 428 aaKnown RBP4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 IRF3Q14653 427 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 RPS6KA2Q15349 733 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 INSCQ1MX18 579 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 TWISTNBQ3B726 338 aaPredicted RBP4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 PTCHD3Q3KNS1 767 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 KCTD21Q4G0X4 260 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 MDH1BQ5I0G3 518 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 C3orf38Q5JPI3 329 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 NAA35Q5VZE5 725 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 ETFRF1Q6IPR1 90 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 METAP1DQ6UB28 335 aaPredicted RBP4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 TMEM270Q6UE05 265 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 CRELD2Q6UXH1 353 aaPredicted RBP4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 SLC36A4Q6YBV0 504 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 PHC2Q8IXK0 858 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 RNF10Q8N5U6 811 aaKnown RBP4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 BANPQ8N9N5 519 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 OR13C2Q8NGS9 318 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 C16orf52Q8NHV5 167 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 HUS1BQ8NHY5 278 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 NFKBIDQ8NI38 313 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 OSR1Q8TAX0 266 aaPredicted RBP4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 SLC26A7Q8TE54 656 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 PEX13Q92968 403 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 PPP2R3CQ969Q6 453 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 SLC22A18Q96BI1 424 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 SNX22Q96L94 193 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 GCNAQ96QF7 691 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 PRPF18Q99633 342 aaKnown RBP4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 RAD9AQ99638 391 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 HNRNPABQ99729 332 aaKnown RBP4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 MLPHQ9BV36 600 aaPredicted RBP4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms