RNA–Protein interactions for RNA: ENST00000449058.6

TOM1-210, Transcript of target of myb1 membrane trafficking protein, human

APPRIS P3 TSL 1 (best) BASIC

Gene TOM1, Length 2,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TOM1-210	ENST00000449058	FUT10	Q6P4F1	479 aa		16.84	■□□□□ 0.29
TOM1-210	ENST00000449058	ISLR2	Q6UXK2	745 aa		16.84	■□□□□ 0.29
TOM1-210	ENST00000449058	GLT6D1	Q7Z4J2	308 aa		16.84	■□□□□ 0.29
TOM1-210	ENST00000449058	C2orf15	Q8WU43	125 aa	Known RBP	16.84	■□□□□ 0.29
TOM1-210	ENST00000449058	FUBP1	Q96AE4	644 aa	Known RBP	16.84	■□□□□ 0.29
TOM1-210	ENST00000449058	BIRC8	Q96P09	236 aa		16.84	■□□□□ 0.29
TOM1-210	ENST00000449058	CASD1	Q96PB1	797 aa		16.84	■□□□□ 0.29
TOM1-210	ENST00000449058	CDK5RAP1	Q96SZ6	601 aa	Known RBP	16.84	■□□□□ 0.29
TOM1-210	ENST00000449058	OSBPL11	Q9BXB4	747 aa		16.84	■□□□□ 0.29
TOM1-210	ENST00000449058	TDRD1	Q9BXT4	1180 aa	Known RBP	16.84	■□□□□ 0.29
TOM1-210	ENST00000449058	CCDC68	Q9H2F9	335 aa		16.84	■□□□□ 0.29
TOM1-210	ENST00000449058	ELAC1	Q9H777	363 aa	Known RBP	16.84	■□□□□ 0.29
TOM1-210	ENST00000449058	VCX3A	Q9NNX9	186 aa		16.84	■□□□□ 0.29
TOM1-210	ENST00000449058	NMRK2	Q9NPI5	230 aa		16.84	■□□□□ 0.29
TOM1-210	ENST00000449058	DNMT3L	Q9UJW3	386 aa		16.84	■□□□□ 0.29
TOM1-210	ENST00000449058	RNF11	Q9Y3C5	154 aa		16.84	■□□□□ 0.29
TOM1-210	ENST00000449058	STX16	O14662	325 aa		16.84	■□□□□ 0.29
TOM1-210	ENST00000449058	NDUFS3	O75489	264 aa		16.84	■□□□□ 0.29
TOM1-210	ENST00000449058	PRR35	P0CG20	571 aa		16.84	■□□□□ 0.29
TOM1-210	ENST00000449058	HSD17B1	P14061	328 aa		16.84	■□□□□ 0.29
TOM1-210	ENST00000449058	IDO1	P14902	403 aa		16.84	■□□□□ 0.29
TOM1-210	ENST00000449058	ETS2	P15036	469 aa		16.84	■□□□□ 0.29
TOM1-210	ENST00000449058	PSMC3	P17980	439 aa		16.84	■□□□□ 0.29
TOM1-210	ENST00000449058	MRPL19	P49406	292 aa	Known RBP	16.84	■□□□□ 0.29
TOM1-210	ENST00000449058	SCNN1B	P51168	640 aa		16.84	■□□□□ 0.29
TOM1-210	ENST00000449058	ANKS6	Q68DC2	871 aa		16.84	■□□□□ 0.29
TOM1-210	ENST00000449058	IYD	Q6PHW0	289 aa		16.84	■□□□□ 0.29
TOM1-210	ENST00000449058	SLC15A3	Q8IY34	581 aa		16.84	■□□□□ 0.29
TOM1-210	ENST00000449058	ABI1	Q8IZP0	508 aa		16.84	■□□□□ 0.29
TOM1-210	ENST00000449058	ANKFN1	Q8N957	763 aa		16.84	■□□□□ 0.29
TOM1-210	ENST00000449058	RMDN1	Q96DB5	314 aa		16.84	■□□□□ 0.29
TOM1-210	ENST00000449058	GLT1D1	Q96MS3	346 aa		16.84	■□□□□ 0.29
TOM1-210	ENST00000449058	PRPF18	Q99633	342 aa	Known RBP	16.84	■□□□□ 0.29
TOM1-210	ENST00000449058	GPR21	Q99679	349 aa		16.84	■□□□□ 0.29
TOM1-210	ENST00000449058	SPON2	Q9BUD6	331 aa		16.84	■□□□□ 0.29
TOM1-210	ENST00000449058	BTRC	Q9Y297	605 aa		16.84	■□□□□ 0.29
TOM1-210	ENST00000449058	GPR45	Q9Y5Y3	372 aa		16.84	■□□□□ 0.29
TOM1-210	ENST00000449058	ZNF839	A8K0R7	811 aa		16.83	■□□□□ 0.28
TOM1-210	ENST00000449058	SYCE1L	A8MT33	242 aa		16.83	■□□□□ 0.28
TOM1-210	ENST00000449058	CDC7	O00311	574 aa		16.83	■□□□□ 0.28
TOM1-210	ENST00000449058	ANGPT2	O15123	496 aa		16.83	■□□□□ 0.28
TOM1-210	ENST00000449058	VILL	O15195	856 aa		16.83	■□□□□ 0.28
TOM1-210	ENST00000449058	STAMBP	O95630	424 aa		16.83	■□□□□ 0.28
TOM1-210	ENST00000449058	ALDH2	P05091	517 aa		16.83	■□□□□ 0.28
TOM1-210	ENST00000449058	BMP2	P12643	396 aa		16.83	■□□□□ 0.28
TOM1-210	ENST00000449058	CALR	P27797	417 aa	Known RBP	16.83	■□□□□ 0.28
TOM1-210	ENST00000449058	ATP5C1	P36542	298 aa	Known RBP	16.83	■□□□□ 0.28
TOM1-210	ENST00000449058	SLC11A2	P49281	568 aa		16.83	■□□□□ 0.28
TOM1-210	ENST00000449058	NAA20	P61599	178 aa		16.83	■□□□□ 0.28
TOM1-210	ENST00000449058	RPS24	P62847	133 aa	Known RBP	16.83	■□□□□ 0.28
TOM1-210	ENST00000449058	NADK2	Q4G0N4	442 aa		16.83	■□□□□ 0.28
TOM1-210	ENST00000449058	BLOC1S3	Q6QNY0	202 aa		16.83	■□□□□ 0.28
TOM1-210	ENST00000449058	AMIGO2	Q86SJ2	522 aa		16.83	■□□□□ 0.28
TOM1-210	ENST00000449058	NKAP	Q8N5F7	415 aa	Known RBP	16.83	■□□□□ 0.28
TOM1-210	ENST00000449058	TBRG4	Q969Z0	631 aa	Known RBP eCLIP	16.83	■□□□□ 0.28	1e-6	■■■■■ 46.2
TOM1-210	ENST00000449058	SLC29A1	Q99808	456 aa		16.83	■□□□□ 0.28
TOM1-210	ENST00000449058	ZBED2	Q9BTP6	218 aa		16.83	■□□□□ 0.28
TOM1-210	ENST00000449058	RBM38	Q9H0Z9	239 aa	Known RBP	16.83	■□□□□ 0.28
TOM1-210	ENST00000449058	NOL11	Q9H8H0	719 aa	Known RBP	16.83	■□□□□ 0.28
TOM1-210	ENST00000449058	SEMA4B	Q9NPR2	832 aa	Predicted RBP	16.83	■□□□□ 0.28
TOM1-210	ENST00000449058	C2orf81	A6NN90	581 aa		16.82	■□□□□ 0.28
TOM1-210	ENST00000449058		H7C4K7	107 aa		16.82	■□□□□ 0.28
TOM1-210	ENST00000449058	TSPAN12	O95859	305 aa		16.82	■□□□□ 0.28
TOM1-210	ENST00000449058	CD9	P21926	228 aa		16.82	■□□□□ 0.28
TOM1-210	ENST00000449058	GRIA3	P42263	894 aa		16.82	■□□□□ 0.28
TOM1-210	ENST00000449058	GATM	P50440	423 aa		16.82	■□□□□ 0.28
TOM1-210	ENST00000449058	FOXM1	Q08050	763 aa		16.82	■□□□□ 0.28
TOM1-210	ENST00000449058	DYNC1I2	Q13409	638 aa	Known RBP	16.82	■□□□□ 0.28
TOM1-210	ENST00000449058	PTPRN	Q16849	979 aa		16.82	■□□□□ 0.28
TOM1-210	ENST00000449058	SLC5A9	Q2M3M2	681 aa		16.82	■□□□□ 0.28
TOM1-210	ENST00000449058	SPATA19	Q7Z5L4	167 aa		16.82	■□□□□ 0.28
TOM1-210	ENST00000449058	CARM1	Q86X55	608 aa		16.82	■□□□□ 0.28
TOM1-210	ENST00000449058	TSPEAR	Q8WU66	669 aa		16.82	■□□□□ 0.28
TOM1-210	ENST00000449058	CANT1	Q8WVQ1	401 aa		16.82	■□□□□ 0.28
TOM1-210	ENST00000449058	EXOC2	Q96KP1	924 aa		16.82	■□□□□ 0.28
TOM1-210	ENST00000449058	NUSAP1	Q9BXS6	441 aa	Known RBP	16.82	■□□□□ 0.28
TOM1-210	ENST00000449058	IL1RL2	Q9HB29	575 aa		16.82	■□□□□ 0.28
TOM1-210	ENST00000449058	CCM2L	Q9NUG4	571 aa	Predicted RBP	16.82	■□□□□ 0.28
TOM1-210	ENST00000449058	GALP	Q9UBC7	116 aa		16.82	■□□□□ 0.28
TOM1-210	ENST00000449058	HCST	Q9UBK5	93 aa		16.82	■□□□□ 0.28
TOM1-210	ENST00000449058	MYOCOS	A0A1B0GUC4	107 aa		16.82	■□□□□ 0.28
TOM1-210	ENST00000449058	ILVBL	A1L0T0	632 aa		16.82	■□□□□ 0.28
TOM1-210	ENST00000449058	AQP12B	A6NM10	295 aa		16.82	■□□□□ 0.28
TOM1-210	ENST00000449058	CLDN11	O75508	207 aa		16.82	■□□□□ 0.28
TOM1-210	ENST00000449058	TIPRL	O75663	272 aa		16.82	■□□□□ 0.28
TOM1-210	ENST00000449058	F11	P03951	625 aa		16.82	■□□□□ 0.28
TOM1-210	ENST00000449058	SLC6A2	P23975	617 aa		16.82	■□□□□ 0.28
TOM1-210	ENST00000449058	CDKN1C	P49918	316 aa	Predicted RBP	16.82	■□□□□ 0.28
TOM1-210	ENST00000449058	BNIP2	Q12982	314 aa		16.82	■□□□□ 0.28
TOM1-210	ENST00000449058	CYTH1	Q15438	398 aa		16.82	■□□□□ 0.28
TOM1-210	ENST00000449058	SPATS1	Q496A3	300 aa		16.82	■□□□□ 0.28
TOM1-210	ENST00000449058	PABPC1L	Q4VXU2	614 aa	Known RBP	16.82	■□□□□ 0.28
TOM1-210	ENST00000449058	ERMP1	Q7Z2K6	904 aa		16.82	■□□□□ 0.28
TOM1-210	ENST00000449058	AQP12A	Q8IXF9	295 aa		16.82	■□□□□ 0.28
TOM1-210	ENST00000449058	SLC43A3	Q8NBI5	491 aa		16.82	■□□□□ 0.28
TOM1-210	ENST00000449058	SMIM14	Q96QK8	99 aa		16.82	■□□□□ 0.28
TOM1-210	ENST00000449058	SLC30A3	Q99726	388 aa		16.82	■□□□□ 0.28
TOM1-210	ENST00000449058	CIB1	Q99828	191 aa		16.82	■□□□□ 0.28
TOM1-210	ENST00000449058	SCUBE2	Q9NQ36	999 aa		16.82	■□□□□ 0.28
TOM1-210	ENST00000449058	GID8	Q9NWU2	228 aa		16.82	■□□□□ 0.28

Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms