RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 PKD2L2Q9NZM6 624 aa20.59■□□□□ 0.89
SDC1-205ENST00000447124 ZNHIT2Q9UHR6 403 aa20.59■□□□□ 0.89
SDC1-205ENST00000447124 SHOC2Q9UQ13 582 aa20.59■□□□□ 0.89
SDC1-205ENST00000447124 PCDHGA7Q9Y5G6 932 aa20.59■□□□□ 0.89
SDC1-205ENST00000447124 BAHCC1Q9P281 2608 aa20.59■□□□□ 0.89
SDC1-205ENST00000447124 PPP1R12AO14974 1030 aaPredicted RBP20.58■□□□□ 0.89
SDC1-205ENST00000447124 CST8O60676 142 aa20.58■□□□□ 0.89
SDC1-205ENST00000447124 PRB1P04280 392 aa20.58■□□□□ 0.89
SDC1-205ENST00000447124 ITIH1P19827 911 aa20.58■□□□□ 0.89
SDC1-205ENST00000447124 PTPN3P26045 913 aa20.58■□□□□ 0.89
SDC1-205ENST00000447124 CD68P34810 354 aaPredicted RBP20.58■□□□□ 0.89
SDC1-205ENST00000447124 CDK18Q07002 472 aa20.58■□□□□ 0.89
SDC1-205ENST00000447124 CLN3Q13286 438 aa20.58■□□□□ 0.89
SDC1-205ENST00000447124 C16orf72Q14CZ0 275 aa20.58■□□□□ 0.89
SDC1-205ENST00000447124 PRKD1Q15139 912 aaPredicted RBP20.58■□□□□ 0.89
SDC1-205ENST00000447124 BROXQ5VW32 411 aa20.58■□□□□ 0.89
SDC1-205ENST00000447124 NKAIN2Q5VXU1 208 aa20.58■□□□□ 0.89
SDC1-205ENST00000447124 SPOCD1Q6ZMY3 1216 aa20.58■□□□□ 0.89
SDC1-205ENST00000447124 GALNT13Q8IUC8 556 aa20.58■□□□□ 0.89
SDC1-205ENST00000447124 GPR26Q8NDV2 337 aa20.58■□□□□ 0.89
SDC1-205ENST00000447124 CCHCR1Q8TD31 782 aa20.58■□□□□ 0.89
SDC1-205ENST00000447124 TEKT5Q96M29 485 aa20.58■□□□□ 0.89
SDC1-205ENST00000447124 CDH19Q9H159 772 aa20.58■□□□□ 0.89
SDC1-205ENST00000447124 ZFYVE1Q9HBF4 777 aa20.58■□□□□ 0.89
SDC1-205ENST00000447124 PISDQ9UG56 409 aa20.58■□□□□ 0.89
SDC1-205ENST00000447124 PCDHA13Q9Y5I0 950 aa20.58■□□□□ 0.89
SDC1-205ENST00000447124 TEX51A0A1B0GUA7 166 aa20.57■□□□□ 0.88
SDC1-205ENST00000447124 ATXN7O15265 892 aaPredicted RBP20.57■□□□□ 0.88
SDC1-205ENST00000447124 EFSO43281 561 aa20.57■□□□□ 0.88
SDC1-205ENST00000447124 CPNE6O95741 557 aa20.57■□□□□ 0.88
SDC1-205ENST00000447124 MARCKSL1P49006 195 aa20.57■□□□□ 0.88
SDC1-205ENST00000447124 TMPRSS3P57727 454 aa20.57■□□□□ 0.88
SDC1-205ENST00000447124 WASHC5Q12768 1159 aa20.57■□□□□ 0.88
SDC1-205ENST00000447124 PCSK7Q16549 785 aa20.57■□□□□ 0.88
SDC1-205ENST00000447124 ODF2Q5BJF6 829 aa20.57■□□□□ 0.88
SDC1-205ENST00000447124 ZNF648Q5T619 568 aaPredicted RBP20.57■□□□□ 0.88
SDC1-205ENST00000447124 KAZNQ674X7 775 aa20.57■□□□□ 0.88
SDC1-205ENST00000447124 PIM3Q86V86 326 aa20.57■□□□□ 0.88
SDC1-205ENST00000447124 SLC39A7Q92504 469 aa20.57■□□□□ 0.88
SDC1-205ENST00000447124 MAGEE1Q9HCI5 957 aa20.57■□□□□ 0.88
SDC1-205ENST00000447124 ARFGAP3Q9NP61 516 aa20.57■□□□□ 0.88
SDC1-205ENST00000447124 UBP1Q9NZI7 540 aa20.57■□□□□ 0.88
SDC1-205ENST00000447124 VPS18Q9P253 973 aa20.57■□□□□ 0.88
SDC1-205ENST00000447124 AURKAO14965 403 aa20.56■□□□□ 0.88
SDC1-205ENST00000447124 PSTPIP1O43586 416 aa20.56■□□□□ 0.88
SDC1-205ENST00000447124 GPR3P46089 330 aa20.56■□□□□ 0.88
SDC1-205ENST00000447124 NR2C2P49116 596 aa20.56■□□□□ 0.88
SDC1-205ENST00000447124 UCNP55089 124 aa20.56■□□□□ 0.88
SDC1-205ENST00000447124 TFDP2Q14188 446 aa20.56■□□□□ 0.88
SDC1-205ENST00000447124 TGIF1Q15583 401 aa20.56■□□□□ 0.88
SDC1-205ENST00000447124 PHF19Q5T6S3 580 aa20.56■□□□□ 0.88
SDC1-205ENST00000447124 CHST15Q7LFX5 561 aaPredicted RBP20.56■□□□□ 0.88
SDC1-205ENST00000447124 JAMLQ86YT9 394 aa20.56■□□□□ 0.88
SDC1-205ENST00000447124 SNRNP27Q8WVK2 155 aaKnown RBP20.56■□□□□ 0.88
SDC1-205ENST00000447124 CCDC97Q96F63 343 aaPredicted RBP20.56■□□□□ 0.88
SDC1-205ENST00000447124 ATXN10Q9UBB4 475 aa20.56■□□□□ 0.88
SDC1-205ENST00000447124 SPO11Q9Y5K1 396 aa20.56■□□□□ 0.88
SDC1-205ENST00000447124 SCN8AQ9UQD0 1980 aa20.55■□□□□ 0.88
SDC1-205ENST00000447124 IGHV1OR21-1A0A087WYE8 117 aa20.55■□□□□ 0.88
SDC1-205ENST00000447124 IGHV5-10-1A0A0J9YXX1 117 aa20.55■□□□□ 0.88
SDC1-205ENST00000447124 NVLO15381 856 aaKnown RBP20.55■□□□□ 0.88
SDC1-205ENST00000447124 PMPCBO75439 489 aa20.55■□□□□ 0.88
SDC1-205ENST00000447124 JMJD7P0C870 316 aa20.55■□□□□ 0.88
SDC1-205ENST00000447124 VAC14Q08AM6 782 aa20.55■□□□□ 0.88
SDC1-205ENST00000447124 SQSTM1Q13501 440 aa20.55■□□□□ 0.88
SDC1-205ENST00000447124 PEX6Q13608 980 aa20.55■□□□□ 0.88
SDC1-205ENST00000447124 LRP8Q14114 963 aa20.55■□□□□ 0.88
SDC1-205ENST00000447124 SLC14A2Q15849 920 aa20.55■□□□□ 0.88
SDC1-205ENST00000447124 MAP9Q49MG5 647 aa20.55■□□□□ 0.88
SDC1-205ENST00000447124 ALS2CLQ60I27 953 aa20.55■□□□□ 0.88
SDC1-205ENST00000447124 ZNF761Q86XN6 746 aaPredicted RBP20.55■□□□□ 0.88
SDC1-205ENST00000447124 KATNAL2Q8IYT4 538 aa20.55■□□□□ 0.88
SDC1-205ENST00000447124 SFRP1Q8N474 314 aa20.55■□□□□ 0.88
SDC1-205ENST00000447124 SLC37A2Q8TED4 501 aa20.55■□□□□ 0.88
SDC1-205ENST00000447124 TFB1MQ8WVM0 346 aaKnown RBP20.55■□□□□ 0.88
SDC1-205ENST00000447124 KRT35Q92764 455 aa20.55■□□□□ 0.88
SDC1-205ENST00000447124 USP7Q93009 1102 aa20.55■□□□□ 0.88
SDC1-205ENST00000447124 TBC1D29Q9UFV1 150 aa20.55■□□□□ 0.88
SDC1-205ENST00000447124 ACSL6Q9UKU0 697 aa20.55■□□□□ 0.88
SDC1-205ENST00000447124 KCNK6Q9Y257 313 aa20.55■□□□□ 0.88
SDC1-205ENST00000447124 ZNF711Q9Y462 761 aa20.55■□□□□ 0.88
SDC1-205ENST00000447124 ADGRG1Q9Y653 693 aa20.55■□□□□ 0.88
SDC1-205ENST00000447124 hCG_1818297A0A087WSY0 165 aa20.54■□□□□ 0.88
SDC1-205ENST00000447124 A0A0A6YYK5 440 aaPredicted RBP20.54■□□□□ 0.88
SDC1-205ENST00000447124 RCCD1A6NED2 376 aa20.54■□□□□ 0.88
SDC1-205ENST00000447124 NUAK1O60285 661 aa20.54■□□□□ 0.88
SDC1-205ENST00000447124 C1QL1O75973 258 aa20.54■□□□□ 0.88
SDC1-205ENST00000447124 ZRANB2O95218 330 aaKnown RBP eCLIP20.54■□□□□ 0.88
SDC1-205ENST00000447124 NDST3O95803 873 aa20.54■□□□□ 0.88
SDC1-205ENST00000447124 CCL4P13236 92 aa20.54■□□□□ 0.88
SDC1-205ENST00000447124 ZNF8P17098 575 aaPredicted RBP20.54■□□□□ 0.88
SDC1-205ENST00000447124 FASLGP48023 281 aa20.54■□□□□ 0.88
SDC1-205ENST00000447124 SRSF6Q13247 344 aaKnown RBP20.54■□□□□ 0.88
SDC1-205ENST00000447124 BIRC2Q13490 618 aa20.54■□□□□ 0.88
SDC1-205ENST00000447124 CLPPQ16740 277 aaPredicted RBP20.54■□□□□ 0.88
SDC1-205ENST00000447124 IYDQ6PHW0 289 aa20.54■□□□□ 0.88
SDC1-205ENST00000447124 KDELC1Q6UW63 502 aa20.54■□□□□ 0.88
SDC1-205ENST00000447124 BZW1Q7L1Q6 419 aaKnown RBP20.54■□□□□ 0.88
SDC1-205ENST00000447124 CCDC170Q8IYT3 715 aa20.54■□□□□ 0.88
SDC1-205ENST00000447124 RCOR2Q8IZ40 523 aa20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms