RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 RAET1GQ6H3X3 334 aa12.34□□□□□ -0.43
USP40-205ENST00000430158 IL27RAQ6UWB1 636 aa12.34□□□□□ -0.43
USP40-205ENST00000430158 MACC1Q6ZN28 852 aa12.34□□□□□ -0.43
USP40-205ENST00000430158 ALYREFQ86V81 257 aaKnown RBP12.34□□□□□ -0.43
USP40-205ENST00000430158 HOOK3Q86VS8 718 aa12.34□□□□□ -0.43
USP40-205ENST00000430158 MPP5Q8N3R9 675 aa12.34□□□□□ -0.43
USP40-205ENST00000430158 DNAAF3Q8N9W5 541 aa12.34□□□□□ -0.43
USP40-205ENST00000430158 SEC14L1Q92503 715 aa12.34□□□□□ -0.43
USP40-205ENST00000430158 CDKN2AIPNLQ96HQ2 116 aa12.34□□□□□ -0.43
USP40-205ENST00000430158 DNAJC1Q96KC8 554 aaKnown RBP12.34□□□□□ -0.43
USP40-205ENST00000430158 SIGLEC10Q96LC7 697 aa12.34□□□□□ -0.43
USP40-205ENST00000430158 SERPINB12Q96P63 405 aa12.34□□□□□ -0.43
USP40-205ENST00000430158 ELF4Q99607 663 aaPredicted RBP12.34□□□□□ -0.43
USP40-205ENST00000430158 KIFC1Q9BW19 673 aa12.34□□□□□ -0.43
USP40-205ENST00000430158 WDR26Q9H7D7 661 aa12.34□□□□□ -0.43
USP40-205ENST00000430158 FGF22Q9HCT0 170 aa12.34□□□□□ -0.43
USP40-205ENST00000430158 TREX1Q9NSU2 369 aa12.34□□□□□ -0.43
USP40-205ENST00000430158 GRHL1Q9NZI5 618 aa12.34□□□□□ -0.43
USP40-205ENST00000430158 SLC2A6Q9UGQ3 507 aa12.34□□□□□ -0.43
USP40-205ENST00000430158 FKBPLQ9UIM3 349 aa12.34□□□□□ -0.43
USP40-205ENST00000430158 SLC17A4Q9Y2C5 497 aa12.34□□□□□ -0.43
USP40-205ENST00000430158 TCAF1Q9Y4C2 921 aa12.34□□□□□ -0.43
USP40-205ENST00000430158 OAS3Q9Y6K5 1087 aaKnown RBP12.34□□□□□ -0.43
USP40-205ENST00000430158 TRBV5-4A0A0C4DH59 114 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 CCL22O00626 93 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 TNFRSF10CO14798 259 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 TM4SF5O14894 197 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 GPR39O43194 453 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 UGT1A9O60656 530 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 CSF2P04141 144 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 PYGLP06737 847 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 ZNF883P0CG24 379 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 NME1P15531 152 aaKnown RBP12.33□□□□□ -0.44
USP40-205ENST00000430158 UGT1A6P19224 532 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 UGT1A1P22309 533 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 UGT1A4P22310 534 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 MGAT1P26572 445 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 UGT1A3P35503 534 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 UGT1A5P35504 534 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 SPAM1P38567 509 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 GPR1P46091 355 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 LIMK1P53667 647 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 SESN2P58004 480 aaPredicted RBP12.33□□□□□ -0.44
USP40-205ENST00000430158 PDE1BQ01064 536 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 MORF4L2Q15014 288 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 ALG11Q2TAA5 492 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 MSS51Q4VC12 460 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 ATP13A5Q4VNC0 1218 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 KHDC1Q4VXA5 237 aaKnown RBP12.33□□□□□ -0.44
USP40-205ENST00000430158 PCID2Q5JVF3 399 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 FNBP1LQ5T0N5 605 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 ARMC3Q5W041 872 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 ZDHHC20Q5W0Z9 365 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 ALS2CLQ60I27 953 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 MAATS1Q7Z4T9 603 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 MINDY1Q8N5J2 469 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 LRRN4CLQ8ND94 238 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 STYXQ8WUJ0 223 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 BTN2A2Q8WVV5 523 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 OR1E3Q8WZA6 343 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 PEX13Q92968 403 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 SKA1Q96BD8 255 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 HIC2Q96JB3 615 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 VPS35Q96QK1 796 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 WDR83Q9BRX9 315 aaKnown RBP12.33□□□□□ -0.44
USP40-205ENST00000430158 LRRC1Q9BTT6 524 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 ZSCAN5AQ9BUG6 496 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 EDEM2Q9BV94 578 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 SPATA16Q9BXB7 569 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 IL22Q9GZX6 179 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 TCEAL2Q9H3H9 227 aaPredicted RBP12.33□□□□□ -0.44
USP40-205ENST00000430158 GAREM1Q9H706 876 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 UGT1A7Q9HAW7 530 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 UGT1A10Q9HAW8 530 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 UGT1A8Q9HAW9 530 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 PLAC1Q9HBJ0 212 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 MRM3Q9HC36 420 aaKnown RBP12.33□□□□□ -0.44
USP40-205ENST00000430158 XAB2Q9HCS7 855 aaKnown RBP12.33□□□□□ -0.44
USP40-205ENST00000430158 GDF3Q9NR23 364 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 CHRAC1Q9NRG0 131 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 PHPT1Q9NRX4 125 aaPredicted RBP12.33□□□□□ -0.44
USP40-205ENST00000430158 SMOXQ9NWM0 555 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 SYBUQ9NX95 663 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 SNX24Q9Y343 169 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 PCYT1BQ9Y5K3 369 aaPredicted RBP12.33□□□□□ -0.44
USP40-205ENST00000430158 DGKBQ9Y6T7 804 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 RP1P56715 2156 aa12.33□□□□□ -0.44
USP40-205ENST00000430158 GLYATL1P3A0A0U1RQE8 302 aa12.32□□□□□ -0.44
USP40-205ENST00000430158 HEATR9A2RTY3 570 aa12.32□□□□□ -0.44
USP40-205ENST00000430158 EFCAB8A8MWE9 144 aa12.32□□□□□ -0.44
USP40-205ENST00000430158 GOLGA8MH3BSY2 632 aa12.32□□□□□ -0.44
USP40-205ENST00000430158 AP3B1O00203 1094 aa12.32□□□□□ -0.44
USP40-205ENST00000430158 PCDHGA12O60330 932 aa12.32□□□□□ -0.44
USP40-205ENST00000430158 DFNA5O60443 496 aa12.32□□□□□ -0.44
USP40-205ENST00000430158 GIMD1P0DJR0 217 aa12.32□□□□□ -0.44
USP40-205ENST00000430158 CD59P13987 128 aa12.32□□□□□ -0.44
USP40-205ENST00000430158 ARNTP27540 789 aa12.32□□□□□ -0.44
USP40-205ENST00000430158 ITGA8P53708 1063 aa12.32□□□□□ -0.44
USP40-205ENST00000430158 DRG2P55039 364 aaKnown RBP12.32□□□□□ -0.44
USP40-205ENST00000430158 ZNF542PQ5EBM4 170 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms