RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 C6orf52Q5T4I8 152 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 POTEHQ6S545 545 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 RALGPS2Q86X27 583 aaPredicted RBP8.33□□□□□ -1.08
CD44-208ENST00000428726 NPAS4Q8IUM7 802 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 ZNF683Q8IZ20 524 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 C2orf73Q8N5S3 287 aaPredicted RBP8.33□□□□□ -1.08
CD44-208ENST00000428726 RDH11Q8TC12 318 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 CYB5D2Q8WUJ1 264 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 PTCD2Q8WV60 388 aaKnown RBP8.33□□□□□ -1.08
CD44-208ENST00000428726 ZFYVE19Q96K21 471 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 YME1L1Q96TA2 773 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 NRTNQ99748 197 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 BEGAINQ9BUH8 593 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 UBE2OQ9C0C9 1292 aaKnown RBP8.33□□□□□ -1.08
CD44-208ENST00000428726 DRC3Q9H069 523 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 ZFP14Q9HCL3 533 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 IRAK4Q9NWZ3 460 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 CD274Q9NZQ7 290 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 TRAF6Q9Y4K3 522 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 SQORQ9Y6N5 450 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 NLRC5Q86WI3 1866 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 ZNF839A8K0R7 811 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 F8W8V4 182 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 PDLIM1O00151 329 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 PRLP01236 227 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 PCNAP12004 261 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 CKMT2P17540 419 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 DNAJB1P25685 340 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 POLD2P49005 469 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 SLC11A2P49281 568 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 PRKAA2P54646 552 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 FASTKQ14296 549 aaKnown RBP8.33□□□□□ -1.08
CD44-208ENST00000428726 CYTH1Q15438 398 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 FAM26DQ5JW98 314 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 IRGCQ6NXR0 463 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 MSANTD2Q6P1R3 559 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 NET1Q7Z628 596 aaPredicted RBP8.33□□□□□ -1.08
CD44-208ENST00000428726 ADGRG2Q8IZP9 1017 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 HMGCLL1Q8TB92 370 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 LKAAEAR1Q8TD35 194 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 CMTM5Q96DZ9 223 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 KLHL32Q96NJ5 620 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 FARSBQ9NSD9 589 aaKnown RBP8.33□□□□□ -1.08
CD44-208ENST00000428726 TMEM248Q9NWD8 314 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 FNIP2Q9P278 1114 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 CFAP97Q9P2B7 532 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 ARHGAP26Q9UNA1 814 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 YIPF1Q9Y548 306 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 CNTRLQ7Z7A1 2325 aa8.33□□□□□ -1.08
CD44-208ENST00000428726 C1orf232A0A0U1RR37 186 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 UBDO15205 165 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 TEX28O15482 410 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 CLASP2O75122 1294 aaKnown RBP8.32□□□□□ -1.08
CD44-208ENST00000428726 C1QCP02747 245 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 ALDOCP09972 364 aaKnown RBP8.32□□□□□ -1.08
CD44-208ENST00000428726 COL6A2P12110 1019 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 HMGA1P17096 107 aaKnown RBP8.32□□□□□ -1.08
CD44-208ENST00000428726 CD70P32970 193 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 HTR6P50406 440 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 MAPK10P53779 464 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 TIAL1Q01085 375 aaKnown RBP eCLIP8.32□□□□□ -1.08
CD44-208ENST00000428726 TRMT5Q32P41 509 aaKnown RBP8.32□□□□□ -1.08
CD44-208ENST00000428726 CNPY1Q3B7I2 92 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 USP41Q3LFD5 358 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 CMPK2Q5EBM0 449 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 RABL3Q5HYI8 236 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 TECRLQ5HYJ1 363 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 AGAP9Q5VTM2 703 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 FAM180BQ6P0A1 224 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 ANKS3Q6ZW76 656 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 MFN1Q8IWA4 741 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 CNTN4Q8IWV2 1026 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 UMODL1-AS1Q8N2C9 162 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 C12orf76Q8N812 135 aaPredicted RBP8.32□□□□□ -1.08
CD44-208ENST00000428726 FUBP1Q96AE4 644 aaKnown RBP8.32□□□□□ -1.08
CD44-208ENST00000428726 LINGO1Q96FE5 620 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 C1orf74Q96LT6 269 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 AKTIPQ9H8T0 292 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 LIN28AQ9H9Z2 209 aaKnown RBP8.32□□□□□ -1.08
CD44-208ENST00000428726 MRM3Q9HC36 420 aaKnown RBP8.32□□□□□ -1.08
CD44-208ENST00000428726 SNX13Q9Y5W8 968 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 PRSS21Q9Y6M0 314 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 SAC3D1A6NKF1 404 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 TIPRLO75663 272 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 CABYRO75952 493 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 OR4F21O95013 312 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 HGFP14210 728 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 CST5P28325 142 aaPredicted RBP8.32□□□□□ -1.08
CD44-208ENST00000428726 HOXD10P28358 340 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 CSRP3P50461 194 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 SLC7A2P52569 658 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 DGKQP52824 942 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 ACTR3P61158 418 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 HMGCS1Q01581 520 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 NUMA1Q14980 2115 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 ZRSR2Q15696 482 aaKnown RBP8.32□□□□□ -1.08
CD44-208ENST00000428726 UNC50Q53HI1 259 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 MTX3Q5HYI7 312 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 TMCO4Q5TGY1 634 aa8.32□□□□□ -1.08
CD44-208ENST00000428726 PLPP4Q5VZY2 271 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms