RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 MBTD1Q05BQ5 628 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 ZNF730Q6ZMV8 503 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 C16orf59Q7L2K0 433 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 LINGO2Q7L985 606 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 PEX5LQ8IYB4 626 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 NETO2Q8NC67 525 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 HDAC10Q969S8 669 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 ULBP1Q9BZM6 244 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 C11orf16Q9NQ32 467 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 PLK2Q9NYY3 685 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 ALG5Q9Y673 324 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 FAM86C2PA6NEL3 165 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 H7C2Y5 167 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 SLC2A2P11168 524 aaPredicted RBP11.8□□□□□ -0.52
SYNPO-202ENST00000394243 CPT1AP50416 773 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 ZNF135P52742 658 aaPredicted RBP11.8□□□□□ -0.52
SYNPO-202ENST00000394243 GNASQ5JWF2 1037 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 ADAMTSL2Q86TH1 951 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 TRAPPC5Q8IUR0 188 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 UBE2E3Q969T4 207 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 ZNF354BQ96LW1 612 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 TSSK3Q96PN8 268 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 KLHL5Q96PQ7 755 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 AIFM2Q9BRQ8 373 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 RHOJQ9H4E5 214 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 NEK6Q9HC98 313 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 ASTN1O14525 1302 aa11.8□□□□□ -0.52
SYNPO-202ENST00000394243 GPR182O15218 404 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 IPO13O94829 963 aaKnown RBP11.79□□□□□ -0.52
SYNPO-202ENST00000394243 PIRTP0C851 137 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 ACTR3P61158 418 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 SEC14L1Q92503 715 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 GTPBP3Q969Y2 492 aaKnown RBP11.79□□□□□ -0.52
SYNPO-202ENST00000394243 ZNF670Q9BS34 389 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 FAIM2Q9BWQ8 316 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 HIPK3Q9H422 1215 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 A0A075B6Q4 140 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 TCRBV7S2A1N4TA0A589 114 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 KLHL33A6NCF5 533 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 FPGTO14772 594 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 IGSF6O95976 241 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 ATP6V0D1P61421 351 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 PLEKHG6Q3KR16 790 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 GARNL3Q5VVW2 1013 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 XKR5Q6UX68 686 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 AGMOQ6ZNB7 445 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 UPB1Q9UBR1 384 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 LGALS13Q9UHV8 139 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 PPM1HQ9ULR3 514 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 MAN2B2Q9Y2E5 1009 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 TIMM22Q9Y584 194 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 GRIN2DO15399 1336 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 KANTRA0A1W2PQU2 76 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 A8MV72 311 aaPredicted RBP11.79□□□□□ -0.52
SYNPO-202ENST00000394243 hCG_2039718K7EN88 272 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 PBX1P40424 430 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 PHF13Q86YI8 300 aaPredicted RBP11.79□□□□□ -0.52
SYNPO-202ENST00000394243 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.79□□□□□ -0.52
SYNPO-202ENST00000394243 CHST4Q8NCG5 386 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 C10orf82Q8WW14 230 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 TCF25Q9BQ70 676 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 CKLFQ9UBR5 152 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 PRMT5O14744 637 aaPredicted RBP11.79□□□□□ -0.52
SYNPO-202ENST00000394243 POU2F1P14859 743 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 CERCAMQ5T4B2 595 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 PRAMEF18Q5VWM3 479 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 ASB18Q6ZVZ8 466 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 RD3Q7Z3Z2 195 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 ZNF431Q8TF32 576 aaPredicted RBP11.79□□□□□ -0.52
SYNPO-202ENST00000394243 FCGR1BQ92637 280 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 ZNF490Q9ULM2 529 aaPredicted RBP11.79□□□□□ -0.52
SYNPO-202ENST00000394243 M0R036 132 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 WRBO00258 174 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 EI24O14681 340 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 MPZL2O60487 215 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 RBMXL2O75526 392 aaKnown RBP11.79□□□□□ -0.52
SYNPO-202ENST00000394243 TFPTP0C1Z6 253 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 CYP2B6P20813 491 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 HECTD3Q5T447 861 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 S100PBPQ96BU1 408 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 PPCDCQ96CD2 204 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 PAK6Q9NQU5 681 aaPredicted RBP11.79□□□□□ -0.52
SYNPO-202ENST00000394243 DNAJB4Q9UDY4 337 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 SALL3Q9BXA9 1300 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 NPEPPSL1A6NEC2 478 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 ADRB2P07550 413 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 KLRK1P26718 216 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 DLG1Q12959 904 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 MAB21L1Q13394 359 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 ZNHIT3Q15649 155 aaPredicted RBP11.79□□□□□ -0.52
SYNPO-202ENST00000394243 ZNF829Q3KNS6 432 aaPredicted RBP11.79□□□□□ -0.52
SYNPO-202ENST00000394243 SETMARQ53H47 684 aaPredicted RBP11.79□□□□□ -0.52
SYNPO-202ENST00000394243 PLEKHG4Q58EX7 1191 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 TAPT1Q6NXT6 567 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 MAP4K3Q8IVH8 894 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 ZNF567Q8N184 647 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 PMM1Q92871 262 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 CDK5RAP1Q96SZ6 601 aaKnown RBP11.79□□□□□ -0.52
SYNPO-202ENST00000394243 OSMRQ99650 979 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 TMEM109Q9BVC6 243 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms