RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 CLDN4O14493 209 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 GLUD1P00367 558 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 FABP3P05413 133 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 EPHA3P29320 983 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 POLR2JP52435 117 aaKnown RBP12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 VGLL4Q14135 290 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 SNAPC1Q16533 368 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 AMIGO1Q86WK6 493 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 ZBTB2Q8N680 514 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 SLC9A6Q92581 669 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 HTATIP2Q9BUP3 242 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 TRPV5Q9NQA5 729 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 IFT46Q9NQC8 304 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 GLYATL1P3A0A0U1RQE8 302 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 EIF2S3P41091 472 aaKnown RBP12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 SLC25A52Q3SY17 297 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 CXorf57Q6NSI4 855 aaKnown RBP12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 SLCO6A1Q86UG4 719 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 MON1AQ86VX9 555 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 TNS4Q8IZW8 715 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 TSEN2Q8NCE0 465 aaKnown RBP12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 RFKQ969G6 155 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 EFHD2Q96C19 240 aaPredicted RBP12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 ETAA1Q9NY74 926 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 TRIM3O75382 744 aaPredicted RBP12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 MASP1P48740 699 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 RPP38P78345 283 aaKnown RBP12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 LRRC52Q8N7C0 313 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 MCFD2Q8NI22 146 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 KLHL32Q96NJ5 620 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 COMMD4Q9H0A8 199 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 TAS2R14Q9NYV8 317 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 TP73O15350 636 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 SNX4O95219 450 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 NT5EP21589 574 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 FRRS1Q6ZNA5 592 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 CUZD1Q86UP6 607 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 SPATA6LQ8N4H0 392 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 BORCS5Q969J3 196 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 DNAJC11Q9NVH1 559 aa12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 PPRC1Q5VV67 1664 aaKnown RBP12.74□□□□□ -0.37
CCDC88C-204ENST00000389857 FADS2P1A8MWK0 482 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 DNAJA2O60884 412 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 CLDN11O75508 207 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 VIPP01282 170 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 FAM129BQ96TA1 746 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 ABCG8Q9H221 673 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 EGFL7Q9UHF1 273 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 FBXO5Q9UKT4 447 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 PIK3C2BO00750 1634 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 AP5Z1O43299 807 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 UROSP10746 265 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 ALYREFQ86V81 257 aaKnown RBP12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 AP4B1Q9Y6B7 739 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 DDX3YO15523 660 aaKnown RBP12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 ADRB2P07550 413 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 IGFBP5P24593 272 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 DRG2P55039 364 aaKnown RBP12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 TARBP2Q15633 366 aaKnown RBP12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 SLC43A3Q8NBI5 491 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 AGAP11Q8TF27 550 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 SNX33Q8WV41 574 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 EXOC2Q96KP1 924 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 PDP1Q9P0J1 537 aaPredicted RBP12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 IFT80Q9P2H3 777 aaPredicted RBP12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 SAGE2PA6NJ88 616 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 BCKDKO14874 412 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 PAGE1O75459 146 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 PIRTP0C851 137 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 CDH4P55283 916 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 CACNG1Q06432 222 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 LPPQ93052 612 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 BTN2A3PQ96KV6 586 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 ACSS3Q9H6R3 686 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 COPS7AQ9UBW8 275 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 H3BM21 787 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 WFS1O76024 890 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 PCCBP05166 539 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 LAMP2P13473 410 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 IL12BP29460 328 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 GALNTL5Q7Z4T8 443 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 AMIGO2Q86SJ2 522 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 RANBP3LQ86VV4 465 aaPredicted RBP12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 MGME1Q9BQP7 344 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 TAPBPLQ9BX59 468 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 RHOJQ9H4E5 214 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 BLOC1S4Q9NUP1 217 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 ELOVL2Q9NXB9 296 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 TBC1D24Q9ULP9 559 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 CYP3A7-CYP3A51PA0A087WV96 503 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 RGS10O43665 173 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 NRP2O60462 931 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 KRT36O76013 467 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 CYP3A7P24462 503 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 GNPDA1P46926 289 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 ZBTB6Q15916 424 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 BBS12Q6ZW61 710 aa12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 C11orf24Q96F05 449 aaPredicted RBP12.73□□□□□ -0.37
CCDC88C-204ENST00000389857 NPAS2Q99743 824 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms