RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 H7C0S8 307 aa21.43■■□□□ 1.02
TRIM54-202ENST00000380075 GPC4O75487 556 aa21.43■■□□□ 1.02
TRIM54-202ENST00000380075 SRP72O76094 671 aaKnown RBP21.43■■□□□ 1.02
TRIM54-202ENST00000380075 TMCC1O94876 653 aa21.43■■□□□ 1.02
TRIM54-202ENST00000380075 IRF1P10914 325 aa21.43■■□□□ 1.02
TRIM54-202ENST00000380075 ARF5P84085 180 aa21.43■■□□□ 1.02
TRIM54-202ENST00000380075 RAD51Q06609 339 aa21.43■■□□□ 1.02
TRIM54-202ENST00000380075 HYAL1Q12794 435 aa21.43■■□□□ 1.02
TRIM54-202ENST00000380075 DUSP6Q16828 381 aa21.43■■□□□ 1.02
TRIM54-202ENST00000380075 AARS2Q5JTZ9 985 aaKnown RBP21.43■■□□□ 1.02
TRIM54-202ENST00000380075 NKAPQ8N5F7 415 aaKnown RBP21.43■■□□□ 1.02
TRIM54-202ENST00000380075 PTGR2Q8N8N7 351 aaPredicted RBP21.43■■□□□ 1.02
TRIM54-202ENST00000380075 HJURPQ8NCD3 748 aaPredicted RBP21.43■■□□□ 1.02
TRIM54-202ENST00000380075 USP13Q92995 863 aaPredicted RBP21.43■■□□□ 1.02
TRIM54-202ENST00000380075 EXOC2Q96KP1 924 aa21.43■■□□□ 1.02
TRIM54-202ENST00000380075 FIS1Q9Y3D6 152 aa21.43■■□□□ 1.02
TRIM54-202ENST00000380075 COMMD10Q9Y6G5 202 aa21.43■■□□□ 1.02
TRIM54-202ENST00000380075 PRUNE2Q8WUY3 3088 aa21.43■■□□□ 1.02
TRIM54-202ENST00000380075 C2orf78A6NCI8 922 aa21.43■■□□□ 1.02
TRIM54-202ENST00000380075 SYCE1LA8MT33 242 aa21.43■■□□□ 1.02
TRIM54-202ENST00000380075 TSPAN3O60637 253 aa21.43■■□□□ 1.02
TRIM54-202ENST00000380075 SPATA31D3P0C874 917 aa21.43■■□□□ 1.02
TRIM54-202ENST00000380075 CLCN4P51793 760 aa21.43■■□□□ 1.02
TRIM54-202ENST00000380075 NCEH1Q6PIU2 408 aa21.43■■□□□ 1.02
TRIM54-202ENST00000380075 SPATA31D4Q6ZUB0 917 aa21.43■■□□□ 1.02
TRIM54-202ENST00000380075 PPP2R3CQ969Q6 453 aa21.43■■□□□ 1.02
TRIM54-202ENST00000380075 CDRT15Q96T59 188 aa21.43■■□□□ 1.02
TRIM54-202ENST00000380075 ECSITQ9BQ95 431 aa21.43■■□□□ 1.02
TRIM54-202ENST00000380075 TNFRSF12AQ9NP84 129 aa21.43■■□□□ 1.02
TRIM54-202ENST00000380075 OAS3Q9Y6K5 1087 aaKnown RBP21.43■■□□□ 1.02
TRIM54-202ENST00000380075 ANKRD36A6QL64 1941 aa21.43■■□□□ 1.02
TRIM54-202ENST00000380075 ATG2AQ2TAZ0 1938 aa21.43■■□□□ 1.02
TRIM54-202ENST00000380075 UBFD1O14562 309 aaKnown RBP21.42■■□□□ 1.02
TRIM54-202ENST00000380075 TGM5O43548 720 aa21.42■■□□□ 1.02
TRIM54-202ENST00000380075 MBL2P11226 248 aaPredicted RBP21.42■■□□□ 1.02
TRIM54-202ENST00000380075 EPHB3P54753 998 aa21.42■■□□□ 1.02
TRIM54-202ENST00000380075 IRX1P78414 480 aaPredicted RBP21.42■■□□□ 1.02
TRIM54-202ENST00000380075 PTK2BQ14289 1009 aa21.42■■□□□ 1.02
TRIM54-202ENST00000380075 OR4D1Q15615 310 aa21.42■■□□□ 1.02
TRIM54-202ENST00000380075 CCDC85BQ15834 202 aaPredicted RBP21.42■■□□□ 1.02
TRIM54-202ENST00000380075 ZNF423Q2M1K9 1284 aa21.42■■□□□ 1.02
TRIM54-202ENST00000380075 ZFP1Q6P2D0 407 aa21.42■■□□□ 1.02
TRIM54-202ENST00000380075 KBTBD2Q8IY47 623 aa21.42■■□□□ 1.02
TRIM54-202ENST00000380075 RYBPQ8N488 228 aaPredicted RBP21.42■■□□□ 1.02
TRIM54-202ENST00000380075 SH3RF2Q8TEC5 729 aa21.42■■□□□ 1.02
TRIM54-202ENST00000380075 MARK4Q96L34 752 aa21.42■■□□□ 1.02
TRIM54-202ENST00000380075 TMCO1Q9UM00 188 aa21.42■■□□□ 1.02
TRIM54-202ENST00000380075 H0Y626 953 aa21.41■■□□□ 1.02
TRIM54-202ENST00000380075 PSMD12O00232 456 aaPredicted RBP21.41■■□□□ 1.02
TRIM54-202ENST00000380075 PRRG1O14668 218 aa21.41■■□□□ 1.02
TRIM54-202ENST00000380075 SORBS2O94875 1100 aaKnown RBP21.41■■□□□ 1.02
TRIM54-202ENST00000380075 CD160O95971 181 aa21.41■■□□□ 1.02
TRIM54-202ENST00000380075 PDHA1P08559 390 aa21.41■■□□□ 1.02
TRIM54-202ENST00000380075 ENO3P13929 434 aaPredicted RBP21.41■■□□□ 1.02
TRIM54-202ENST00000380075 MTHFD2P13995 350 aa21.41■■□□□ 1.02
TRIM54-202ENST00000380075 TWF1Q12792 350 aa21.41■■□□□ 1.02
TRIM54-202ENST00000380075 IZUMO2Q6UXV1 221 aa21.41■■□□□ 1.02
TRIM54-202ENST00000380075 DNAJB7Q7Z6W7 309 aaPredicted RBP21.41■■□□□ 1.02
TRIM54-202ENST00000380075 APLFQ8IW19 511 aaPredicted RBP21.41■■□□□ 1.02
TRIM54-202ENST00000380075 TCEAL8Q8IYN2 117 aa21.41■■□□□ 1.02
TRIM54-202ENST00000380075 C19orf60Q96EN9 201 aa21.41■■□□□ 1.02
TRIM54-202ENST00000380075 PCDHGC4Q9Y5F7 938 aa21.41■■□□□ 1.02
TRIM54-202ENST00000380075 HCFC2Q9Y5Z7 792 aa21.41■■□□□ 1.02
TRIM54-202ENST00000380075 CASQ2O14958 399 aaPredicted RBP21.41■■□□□ 1.02
TRIM54-202ENST00000380075 STX7O15400 261 aaKnown RBP21.41■■□□□ 1.02
TRIM54-202ENST00000380075 VPS26AO75436 327 aa21.41■■□□□ 1.02
TRIM54-202ENST00000380075 SMNDC1O75940 238 aaKnown RBP eCLIP21.41■■□□□ 1.02
TRIM54-202ENST00000380075 EPCAMP16422 314 aa21.41■■□□□ 1.02
TRIM54-202ENST00000380075 ME2P23368 584 aa21.41■■□□□ 1.02
TRIM54-202ENST00000380075 FMO4P31512 558 aa21.41■■□□□ 1.02
TRIM54-202ENST00000380075 PSMD8P48556 350 aa21.41■■□□□ 1.02
TRIM54-202ENST00000380075 ACADVLP49748 655 aa21.41■■□□□ 1.02
TRIM54-202ENST00000380075 ADARP55265 1226 aaKnown RBP21.41■■□□□ 1.02
TRIM54-202ENST00000380075 FASTKQ14296 549 aaKnown RBP21.41■■□□□ 1.02
TRIM54-202ENST00000380075 PABPC1LQ4VXU2 614 aaKnown RBP21.41■■□□□ 1.02
TRIM54-202ENST00000380075 LILRA6Q6PI73 481 aa21.41■■□□□ 1.02
TRIM54-202ENST00000380075 LARP4Q71RC2 724 aaKnown RBP eCLIP21.41■■□□□ 1.02
TRIM54-202ENST00000380075 ITIH5Q86UX2 942 aa21.41■■□□□ 1.02
TRIM54-202ENST00000380075 VN1R2Q8NFZ6 395 aa21.41■■□□□ 1.02
TRIM54-202ENST00000380075 SLC22A17Q8WUG5 538 aa21.41■■□□□ 1.02
TRIM54-202ENST00000380075 DLG3Q92796 817 aa21.41■■□□□ 1.02
TRIM54-202ENST00000380075 ZFRQ96KR1 1074 aaKnown RBP21.41■■□□□ 1.02
TRIM54-202ENST00000380075 GEMIN8Q9NWZ8 242 aaKnown RBP21.41■■□□□ 1.02
TRIM54-202ENST00000380075 ZDHHC7Q9NXF8 308 aa21.41■■□□□ 1.02
TRIM54-202ENST00000380075 C6orf203Q9P0P8 240 aaPredicted RBP21.41■■□□□ 1.02
TRIM54-202ENST00000380075 LHX3Q9UBR4 397 aa21.41■■□□□ 1.02
TRIM54-202ENST00000380075 H3BMM5 538 aa21.4■■□□□ 1.02
TRIM54-202ENST00000380075 UBXN8O00124 270 aa21.4■■□□□ 1.02
TRIM54-202ENST00000380075 LINC01565O15544 149 aa21.4■■□□□ 1.02
TRIM54-202ENST00000380075 TBL1XO60907 577 aa21.4■■□□□ 1.02
TRIM54-202ENST00000380075 GLUD1P00367 558 aa21.4■■□□□ 1.02
TRIM54-202ENST00000380075 GFAPP14136 432 aa21.4■■□□□ 1.02
TRIM54-202ENST00000380075 PKMP14618 531 aaKnown RBP21.4■■□□□ 1.02
TRIM54-202ENST00000380075 CD1EP15812 388 aa21.4■■□□□ 1.02
TRIM54-202ENST00000380075 ERFP50548 548 aa21.4■■□□□ 1.02
TRIM54-202ENST00000380075 THOP1P52888 689 aa21.4■■□□□ 1.02
TRIM54-202ENST00000380075 TRAF2Q12933 501 aa21.4■■□□□ 1.02
TRIM54-202ENST00000380075 UGT3A2Q3SY77 523 aa21.4■■□□□ 1.02
TRIM54-202ENST00000380075 PAQR3Q6TCH7 311 aa21.4■■□□□ 1.02
TRIM54-202ENST00000380075 RPS27LQ71UM5 84 aaKnown RBP21.4■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms