RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 ANPEPP15144 967 aa12.43□□□□□ -0.42
VPS13A-204ENST00000376634 KELP23276 732 aa12.43□□□□□ -0.42
VPS13A-204ENST00000376634 TOB1P50616 345 aaPredicted RBP12.43□□□□□ -0.42
VPS13A-204ENST00000376634 ELF3P78545 371 aaPredicted RBP12.43□□□□□ -0.42
VPS13A-204ENST00000376634 SNAPC1Q16533 368 aa12.43□□□□□ -0.42
VPS13A-204ENST00000376634 GCNT6Q5T4J0 391 aa12.43□□□□□ -0.42
VPS13A-204ENST00000376634 GALNT5Q7Z7M9 940 aa12.43□□□□□ -0.42
VPS13A-204ENST00000376634 TRIM17Q9Y577 477 aa12.43□□□□□ -0.42
VPS13A-204ENST00000376634 UNC13CQ8NB66 2214 aa12.43□□□□□ -0.42
VPS13A-204ENST00000376634 KLRK1P26718 216 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 PPATQ06203 517 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 ABCA11PQ4W5N1 156 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 IMP3Q9NV31 184 aaKnown RBP12.42□□□□□ -0.42
VPS13A-204ENST00000376634 ABI3Q9P2A4 366 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 ATXN10Q9UBB4 475 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 TUBA4AP68366 448 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 RNF43Q68DV7 783 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 PGM2Q96G03 612 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 ERMAPQ96PL5 475 aaPredicted RBP12.42□□□□□ -0.42
VPS13A-204ENST00000376634 PHF12Q96QT6 1004 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 STOX2Q9P2F5 926 aaPredicted RBP12.42□□□□□ -0.42
VPS13A-204ENST00000376634 AKAP6Q13023 2319 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 MSCO60682 206 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 NPR2P20594 1047 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 SP100P23497 879 aaPredicted RBP12.42□□□□□ -0.42
VPS13A-204ENST00000376634 UNC5AQ6ZN44 842 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 TMPRSS11BQ86T26 416 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 MEMO1Q9Y316 297 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 FAM237BA0A1B0GVD1 139 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 CCNKO75909 580 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 CPSF6Q16630 551 aaKnown RBP eCLIP12.42□□□□□ -0.42
VPS13A-204ENST00000376634 PLA2G4EQ3MJ16 856 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 LCN1P1Q5VSP4 162 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 GPR180Q86V85 440 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 TMEM199Q8N511 208 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 ATP6V1C2Q8NEY4 427 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 TESCQ96BS2 214 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 AGO1Q9UL18 857 aaKnown RBP12.42□□□□□ -0.42
VPS13A-204ENST00000376634 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.42□□□□□ -0.42
VPS13A-204ENST00000376634 H3BNX3 289 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 CDK9P50750 372 aaKnown RBP12.42□□□□□ -0.42
VPS13A-204ENST00000376634 CHST4Q8NCG5 386 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 ZNF398Q8TD17 642 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 PORCNQ9H237 461 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 SMURF2Q9HAU4 748 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 RAP2CQ9Y3L5 183 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 SQORQ9Y6N5 450 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 TBC1D3DA0A087WVF3 549 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 TBC1D3IA0A087WXS9 549 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 TBC1D3EA0A087X179 549 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 TBC1D3KA0A087X1G2 549 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 TBC1D3FA6NER0 549 aaPredicted RBP12.42□□□□□ -0.42
VPS13A-204ENST00000376634 TBC1D3LB9A6J9 549 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 PLOD2O00469 737 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 MPZL2O60487 215 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 TBC1D3HP0C7X1 549 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 TBC1D3GQ6DHY5 549 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 TBC1D3CQ6IPX1 549 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 TBC1D3Q8IZP1 549 aaPredicted RBP12.42□□□□□ -0.42
VPS13A-204ENST00000376634 PHF24Q9UPV7 400 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 PRKAB1Q9Y478 270 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 NEDD8-MDP1E9PL57 170 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 SLC30A4O14863 429 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 ERVK-9P63128 1117 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 SLC25A3Q00325 362 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 TRAPPC12Q8WVT3 735 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 ACOT12Q8WYK0 555 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 RTKNQ9BST9 563 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 SP140LQ9H930 580 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 HMX1Q9NP08 348 aaPredicted RBP12.42□□□□□ -0.42
VPS13A-204ENST00000376634 PRPF19Q9UMS4 504 aaKnown RBP12.42□□□□□ -0.42
VPS13A-204ENST00000376634 ABHD2P08910 425 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 MPP2Q14168 576 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 NXF3Q9H4D5 531 aaKnown RBP12.42□□□□□ -0.42
VPS13A-204ENST00000376634 FAM205AQ6ZU69 1335 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 AP2A2O94973 939 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 C15orf59Q2T9L4 293 aaPredicted RBP12.42□□□□□ -0.42
VPS13A-204ENST00000376634 RAP1GAP2Q684P5 730 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 SUN5Q8TC36 379 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 LRMDAQ9H2I8 198 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 TPK1Q9H3S4 243 aa12.42□□□□□ -0.42
VPS13A-204ENST00000376634 PITPNM1O00562 1244 aa12.41□□□□□ -0.42
VPS13A-204ENST00000376634 UBA1P22314 1058 aaKnown RBP12.41□□□□□ -0.42
VPS13A-204ENST00000376634 POMZP3Q6PJE2 187 aa12.41□□□□□ -0.42
VPS13A-204ENST00000376634 FAM35AQ86V20 835 aa12.41□□□□□ -0.42
VPS13A-204ENST00000376634 DIRAS2Q96HU8 199 aa12.41□□□□□ -0.42
VPS13A-204ENST00000376634 EXOC2Q96KP1 924 aa12.41□□□□□ -0.42
VPS13A-204ENST00000376634 IGFBP5P24593 272 aa12.41□□□□□ -0.42
VPS13A-204ENST00000376634 SNX33Q8WV41 574 aa12.41□□□□□ -0.42
VPS13A-204ENST00000376634 ZNF639Q9UID6 485 aa12.41□□□□□ -0.42
VPS13A-204ENST00000376634 UNC5CO95185 931 aa12.41□□□□□ -0.42
VPS13A-204ENST00000376634 ECHS1P30084 290 aa12.41□□□□□ -0.42
VPS13A-204ENST00000376634 PPP3CAQ08209 521 aa12.41□□□□□ -0.42
VPS13A-204ENST00000376634 CRY2Q49AN0 593 aa12.41□□□□□ -0.42
VPS13A-204ENST00000376634 SLC30A6Q6NXT4 461 aa12.41□□□□□ -0.42
VPS13A-204ENST00000376634 PIGXQ8TBF5 258 aa12.41□□□□□ -0.42
VPS13A-204ENST00000376634 AP1S3Q96PC3 154 aa12.41□□□□□ -0.42
VPS13A-204ENST00000376634 RNF208Q9H0X6 261 aa12.41□□□□□ -0.42
VPS13A-204ENST00000376634 TTYH1Q9H313 450 aaPredicted RBP12.41□□□□□ -0.42
VPS13A-204ENST00000376634 RIOX1Q9H6W3 641 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 89.1 ms