RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 NSG1P42857 185 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 PTDSS1P48651 473 aaKnown RBP8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 HSPA13P48723 471 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 GATMP50440 423 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 ARF5P84085 180 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 GSTM4Q03013 218 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 SF3A3Q12874 501 aaKnown RBP eCLIP8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 USP4Q13107 963 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 MAP7Q14244 749 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 PCBP2Q15366 365 aaKnown RBP eCLIP8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 KHDC1Q4VXA5 237 aaKnown RBP8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 RFWD3Q6PCD5 774 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 BRAT1Q6PJG6 821 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 USP45Q70EL2 814 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 MAVSQ7Z434 540 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 ARPINQ7Z6K5 226 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 TMEM150AQ86TG1 271 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 TTC7BQ86TV6 843 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 MFSD6LQ8IWD5 586 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 CFAP52Q8N1V2 620 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 FBXO39Q8N4B4 442 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 TTC30BQ8N4P2 665 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 TXNDC5Q8NBS9 432 aaKnown RBP8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 OR2AP1Q8NGE2 309 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 OR56A4Q8NGH8 313 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 DDI1Q8WTU0 396 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 DNAJC9Q8WXX5 260 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 SCRN2Q96FV2 425 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 NAF1Q96HR8 494 aaKnown RBP8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 B3GALT6Q96L58 329 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 LENG8Q96PV6 779 aaPredicted RBP8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 ATOH8Q96SQ7 321 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 RAD9AQ99638 391 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 OLFM1Q99784 485 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 EFHD1Q9BUP0 239 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 OSBPL1AQ9BXW6 950 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 GPR63Q9BZJ6 419 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 CLPBQ9H078 707 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 VCXQ9H320 206 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 GSTO2Q9H4Y5 243 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 ZFYVE1Q9HBF4 777 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 CD248Q9HCU0 757 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 GID8Q9NWU2 228 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 ZDHHC7Q9NXF8 308 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 KCTD5Q9NXV2 234 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 IL1RAPL1Q9NZN1 696 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 MARK1Q9P0L2 795 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 LHX3Q9UBR4 397 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 PRKAG2Q9UGJ0 569 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 VPS51Q9UID3 782 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 CDH22Q9UJ99 828 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 MCM8Q9UJA3 840 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 SLC25A13Q9UJS0 675 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 CNOT11Q9UKZ1 510 aaKnown RBP8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 RNF112Q9ULX5 631 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 ATP11BQ9Y2G3 1177 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 CPQQ9Y646 472 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 ARL5AQ9Y689 179 aa8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 MRPL42Q9Y6G3 142 aaKnown RBP8.67□□□□□ -1.02
SNRNP40-202ENST00000373720 MIA3Q5JRA6 1907 aa8.66□□□□□ -1.02
SNRNP40-202ENST00000373720 A0A0J9YYE9 177 aa8.66□□□□□ -1.02
SNRNP40-202ENST00000373720 CAPN8A6NHC0 703 aa8.66□□□□□ -1.02
SNRNP40-202ENST00000373720 PSMD12O00232 456 aaPredicted RBP8.66□□□□□ -1.02
SNRNP40-202ENST00000373720 CASQ2O14958 399 aaPredicted RBP8.66□□□□□ -1.02
SNRNP40-202ENST00000373720 AZIN1O14977 448 aa8.66□□□□□ -1.02
SNRNP40-202ENST00000373720 RAD51BO15315 384 aa8.66□□□□□ -1.02
SNRNP40-202ENST00000373720 SLC16A5O15375 505 aa8.66□□□□□ -1.02
SNRNP40-202ENST00000373720 TGM5O43548 720 aa8.66□□□□□ -1.02
SNRNP40-202ENST00000373720 ENTPD5O75356 428 aa8.66□□□□□ -1.02
SNRNP40-202ENST00000373720 KATNA1O75449 491 aa8.66□□□□□ -1.02
SNRNP40-202ENST00000373720 AP2A2O94973 939 aa8.66□□□□□ -1.02
SNRNP40-202ENST00000373720 ESRRBO95718 433 aa8.66□□□□□ -1.02
SNRNP40-202ENST00000373720 TOP3BO95985 862 aaKnown RBP8.66□□□□□ -1.02
SNRNP40-202ENST00000373720 GLUD1P00367 558 aa8.66□□□□□ -1.02
SNRNP40-202ENST00000373720 TRBC1P01850 177 aa8.66□□□□□ -1.02
SNRNP40-202ENST00000373720 FGBP02675 491 aa8.66□□□□□ -1.02
SNRNP40-202ENST00000373720 ASLP04424 464 aa8.66□□□□□ -1.02
SNRNP40-202ENST00000373720 CKMP06732 381 aa8.66□□□□□ -1.02
SNRNP40-202ENST00000373720 SNRPB2P08579 225 aaKnown RBP8.66□□□□□ -1.02
SNRNP40-202ENST00000373720 GFAPP14136 432 aa8.66□□□□□ -1.02
SNRNP40-202ENST00000373720 VCLP18206 1134 aa8.66□□□□□ -1.02
SNRNP40-202ENST00000373720 GABRR2P28476 465 aa8.66□□□□□ -1.02
SNRNP40-202ENST00000373720 MC4RP32245 332 aa8.66□□□□□ -1.02
SNRNP40-202ENST00000373720 AVPR1AP37288 418 aa8.66□□□□□ -1.02
SNRNP40-202ENST00000373720 GLRBP48167 497 aa8.66□□□□□ -1.02
SNRNP40-202ENST00000373720 ARSDP51689 593 aa8.66□□□□□ -1.02
SNRNP40-202ENST00000373720 CDKN2DP55273 166 aa8.66□□□□□ -1.02
SNRNP40-202ENST00000373720 SH3BGRP55822 239 aaPredicted RBP8.66□□□□□ -1.02
SNRNP40-202ENST00000373720 CDKL1Q00532 357 aa8.66□□□□□ -1.02
SNRNP40-202ENST00000373720 TBL3Q12788 808 aaKnown RBP8.66□□□□□ -1.02
SNRNP40-202ENST00000373720 DLG1Q12959 904 aa8.66□□□□□ -1.02
SNRNP40-202ENST00000373720 UBAP2LQ14157 1087 aaKnown RBP8.66□□□□□ -1.02
SNRNP40-202ENST00000373720 MUM1Q2TAK8 710 aa8.66□□□□□ -1.02
SNRNP40-202ENST00000373720 PLEKHG6Q3KR16 790 aa8.66□□□□□ -1.02
SNRNP40-202ENST00000373720 SLC9B1Q4ZJI4 515 aa8.66□□□□□ -1.02
SNRNP40-202ENST00000373720 ACSBG2Q5FVE4 666 aa8.66□□□□□ -1.02
SNRNP40-202ENST00000373720 SAMD4BQ5PRF9 694 aaKnown RBP8.66□□□□□ -1.02
SNRNP40-202ENST00000373720 RBM20Q5T481 1227 aaKnown RBP8.66□□□□□ -1.02
SNRNP40-202ENST00000373720 C10orf62Q5T681 223 aaPredicted RBP8.66□□□□□ -1.02
SNRNP40-202ENST00000373720 GPR158Q5T848 1215 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms