RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 EMX1Q04741 257 aaPredicted RBP6.76□□□□□ -1.33
VPS39-202ENST00000348544 FOXM1Q08050 763 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 NFYCQ13952 458 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 ZNF678Q5SXM1 525 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 NOL9Q5SY16 702 aaKnown RBP6.76□□□□□ -1.33
VPS39-202ENST00000348544 SYPL2Q5VXT5 272 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 DENND5AQ6IQ26 1287 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 TAF2Q6P1X5 1199 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 BNIPLQ7Z465 357 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 LYSMD2Q8IV50 215 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 EXOC8Q8IYI6 725 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 SLC22A15Q8IZD6 547 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 C2CD4AQ8NCU7 369 aaPredicted RBP6.76□□□□□ -1.33
VPS39-202ENST00000348544 PSMA8Q8TAA3 256 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 PHF10Q8WUB8 498 aaKnown RBP6.76□□□□□ -1.33
VPS39-202ENST00000348544 ZNF300Q96RE9 604 aaPredicted RBP6.76□□□□□ -1.33
VPS39-202ENST00000348544 NODALQ96S42 347 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 EMILIN2Q9BXX0 1053 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 MUC13Q9H3R2 512 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 ASB7Q9H672 318 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 SP140LQ9H930 580 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 CPNE5Q9HCH3 593 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 PIGVQ9NUD9 493 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 INTS7Q9NVH2 962 aaKnown RBP6.76□□□□□ -1.33
VPS39-202ENST00000348544 FBXO10Q9UK96 956 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 THSD7AQ9UPZ6 1657 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 A0A087WZ62 844 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 A0A1B0GTL3 188 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 C16orf96A6NNT2 1141 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 M0R3G1 203 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 UBXN8O00124 270 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 SLC1A7O00341 560 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 SNPHO15079 494 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 SLC22A1O15245 554 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 HOXC11O43248 304 aaPredicted RBP6.76□□□□□ -1.33
VPS39-202ENST00000348544 XPNPEP2O43895 674 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 NOBOXO60393 691 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 RFPL2O75678 378 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 LRIG2O94898 1065 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 CDK14O94921 469 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 STAU1O95793 577 aaKnown RBP6.76□□□□□ -1.33
VPS39-202ENST00000348544 MT-CYBP00156 380 aaPredicted RBP6.76□□□□□ -1.33
VPS39-202ENST00000348544 JCHAINP01591 159 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 CD6P30203 668 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 SCNN1AP37088 669 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 MAP2K4P45985 399 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 KPNA2P52292 529 aaKnown RBP6.76□□□□□ -1.33
VPS39-202ENST00000348544 POU4F1Q01851 419 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 BST2Q10589 180 aaKnown RBP6.76□□□□□ -1.33
VPS39-202ENST00000348544 SEMA3BQ13214 749 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 STXBP2Q15833 593 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 FXNQ16595 210 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 DGUOKQ16854 277 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 SPATS1Q496A3 300 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 PCID2Q5JVF3 399 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 DDX59Q5T1V6 619 aaKnown RBP eCLIP6.76□□□□□ -1.33
VPS39-202ENST00000348544 PPP2R2DQ66LE6 453 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 ARHGAP17Q68EM7 881 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 TXNDC11Q6PKC3 985 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 TMEM207Q6UWW9 146 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 C14orf80Q86SX3 495 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 CLEC4FQ8N1N0 589 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 FAM86B1Q8N7N1 296 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 RHOXF1Q8NHV9 184 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 TWIST2Q8WVJ9 160 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 GLMNQ92990 594 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 FAM149B1Q96BN6 582 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 YIPF6Q96EC8 236 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 CCDC126Q96EE4 140 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 TEKT5Q96M29 485 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 PPP1R16BQ96T49 567 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 SLIRPQ9GZT3 109 aaKnown RBP6.76□□□□□ -1.33
VPS39-202ENST00000348544 MIR1-1HGQ9H1L0 117 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 DSN1Q9H410 356 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 EPS8L2Q9H6S3 715 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 ALG9Q9H6U8 611 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 NEK6Q9HC98 313 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 ABCB10Q9NRK6 738 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 FBXO5Q9UKT4 447 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 BTRCQ9Y297 605 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 TESMINQ9Y4I5 508 aa6.76□□□□□ -1.33
VPS39-202ENST00000348544 A0A1W2PP18 115 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 NOTOA8MTQ0 251 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 M0QYT0 321 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 UPK1BO75841 260 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 SOAT2O75908 522 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 SIX3O95343 332 aaPredicted RBP6.75□□□□□ -1.33
VPS39-202ENST00000348544 KRT75O95678 551 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 C1RP00736 705 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 LTA4HP09960 611 aaKnown RBP6.75□□□□□ -1.33
VPS39-202ENST00000348544 CYP2C8P10632 490 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 CDH1P12830 882 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 HGFP14210 728 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 ACADSBP45954 432 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 PPP5CP53041 499 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 SLC12A2P55011 1212 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 ISL1P61371 349 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 COPZ1P61923 177 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 PHC1P78364 1004 aa6.75□□□□□ -1.33
VPS39-202ENST00000348544 KCNAB2Q13303 367 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms