RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 LY6G5CQ5SRR4 150 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 MBLAC2Q68D91 279 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 CNSTQ6PJW8 725 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 C12orf76Q8N812 135 aaPredicted RBP12.78□□□□□ -0.36
CLK3-201ENST00000345005 PHC3Q8NDX5 983 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 OR13C4Q8NGS5 318 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 GDPD5Q8WTR4 605 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 NAT14Q8WUY8 206 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 GFM2Q969S9 779 aaKnown RBP12.78□□□□□ -0.36
CLK3-201ENST00000345005 TSPAN17Q96FV3 270 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 PLEKHG4BQ96PX9 1271 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 CDCA3Q99618 268 aaPredicted RBP12.78□□□□□ -0.36
CLK3-201ENST00000345005 MECRQ9BV79 373 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 PBX4Q9BYU1 374 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 NKX2-4Q9H2Z4 354 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 ATP13A3Q9H7F0 1226 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 MAGEE1Q9HCI5 957 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 CATSPERZQ9NTU4 200 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 MRGBPQ9NV56 204 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 DZANK1Q9NVP4 752 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 EVLQ9UI08 416 aaPredicted RBP12.78□□□□□ -0.36
CLK3-201ENST00000345005 PPM1HQ9ULR3 514 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 RAB26Q9ULW5 256 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 COLQQ9Y215 455 aaPredicted RBP12.78□□□□□ -0.36
CLK3-201ENST00000345005 DNAJC16Q9Y2G8 782 aa12.78□□□□□ -0.36
CLK3-201ENST00000345005 A0A087X1B8 175 aa12.77□□□□□ -0.37
CLK3-201ENST00000345005 CCL22O00626 93 aa12.77□□□□□ -0.37
CLK3-201ENST00000345005 ZSCAN9O15535 394 aaPredicted RBP12.77□□□□□ -0.37
CLK3-201ENST00000345005 SOCS5O75159 536 aa12.77□□□□□ -0.37
CLK3-201ENST00000345005 PGLSO95336 258 aa12.77□□□□□ -0.37
CLK3-201ENST00000345005 GSRP00390 522 aa12.77□□□□□ -0.37
CLK3-201ENST00000345005 SLC35E2BP0CK96 405 aa12.77□□□□□ -0.37
CLK3-201ENST00000345005 KITP10721 976 aa12.77□□□□□ -0.37
CLK3-201ENST00000345005 SRCP12931 536 aa12.77□□□□□ -0.37
CLK3-201ENST00000345005 CPA3P15088 417 aa12.77□□□□□ -0.37
CLK3-201ENST00000345005 HOXB8P17481 243 aaPredicted RBP12.77□□□□□ -0.37
CLK3-201ENST00000345005 RPL5P46777 297 aaKnown RBP12.77□□□□□ -0.37
CLK3-201ENST00000345005 PRKAA2P54646 552 aa12.77□□□□□ -0.37
CLK3-201ENST00000345005 PTPRCAPQ14761 206 aa12.77□□□□□ -0.37
CLK3-201ENST00000345005 DGKKQ5KSL6 1271 aa12.77□□□□□ -0.37
CLK3-201ENST00000345005 PPP2R2DQ66LE6 453 aa12.77□□□□□ -0.37
CLK3-201ENST00000345005 ASTLQ6HA08 431 aaPredicted RBP12.77□□□□□ -0.37
CLK3-201ENST00000345005 AFTPHQ6ULP2 937 aa12.77□□□□□ -0.37
CLK3-201ENST00000345005 TMC5Q6UXY8 1006 aa12.77□□□□□ -0.37
CLK3-201ENST00000345005 PLD6Q8N2A8 252 aaKnown RBP12.77□□□□□ -0.37
CLK3-201ENST00000345005 MARVELD2Q8N4S9 558 aa12.77□□□□□ -0.37
CLK3-201ENST00000345005 OR4K2Q8NGD2 314 aa12.77□□□□□ -0.37
CLK3-201ENST00000345005 OR2AP1Q8NGE2 309 aa12.77□□□□□ -0.37
CLK3-201ENST00000345005 SLC26A7Q8TE54 656 aa12.77□□□□□ -0.37
CLK3-201ENST00000345005 MYO19Q96H55 970 aa12.77□□□□□ -0.37
CLK3-201ENST00000345005 NDNQ99608 321 aa12.77□□□□□ -0.37
CLK3-201ENST00000345005 OMDQ99983 421 aa12.77□□□□□ -0.37
CLK3-201ENST00000345005 CEP44Q9C0F1 390 aa12.77□□□□□ -0.37
CLK3-201ENST00000345005 NMRAL1Q9HBL8 299 aa12.77□□□□□ -0.37
CLK3-201ENST00000345005 LMCD1Q9NZU5 365 aa12.77□□□□□ -0.37
CLK3-201ENST00000345005 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.77□□□□□ -0.37
CLK3-201ENST00000345005 COPG2Q9UBF2 871 aa12.77□□□□□ -0.37
CLK3-201ENST00000345005 CDH22Q9UJ99 828 aa12.77□□□□□ -0.37
CLK3-201ENST00000345005 WNT6Q9Y6F9 365 aa12.77□□□□□ -0.37
CLK3-201ENST00000345005 TRANK1O15050 2925 aa12.77□□□□□ -0.37
CLK3-201ENST00000345005 GOLGA8QA0A0J9YX86 632 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 GOLGA8OA6NCC3 632 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 OR51F1A6NGY5 319 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 TMEM114B3SHH9 223 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 GOLGA8NF8WBI6 632 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 AURKAO14965 403 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 STX7O15400 261 aaKnown RBP12.76□□□□□ -0.37
CLK3-201ENST00000345005 PHGDHO43175 533 aaKnown RBP12.76□□□□□ -0.37
CLK3-201ENST00000345005 HTRA2O43464 458 aaPredicted RBP12.76□□□□□ -0.37
CLK3-201ENST00000345005 ZNF821O75541 412 aaPredicted RBP12.76□□□□□ -0.37
CLK3-201ENST00000345005 THRAP10827 490 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 TAS2R39P59534 338 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 ECT2LQ008S8 904 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 IRF9Q00978 393 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 TUBB3Q13509 450 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 KCNC3Q14003 757 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 PDK3Q15120 406 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 FUT11Q495W5 492 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 C16orf89Q6UX73 402 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 CAMK1DQ8IU85 385 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 MFSD6LQ8IWD5 586 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 PCDH20Q8N6Y1 951 aaKnown RBP12.76□□□□□ -0.37
CLK3-201ENST00000345005 EFHBQ8N7U6 833 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 RDH11Q8TC12 318 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 PIH1D2Q8WWB5 315 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 RPL10LQ96L21 214 aaKnown RBP12.76□□□□□ -0.37
CLK3-201ENST00000345005 TCF12Q99081 682 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 C1QTNF1Q9BXJ1 281 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 EBF3Q9H4W6 596 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 SLC28A3Q9HAS3 691 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 INTS10Q9NVR2 710 aaKnown RBP12.76□□□□□ -0.37
CLK3-201ENST00000345005 ZNF358Q9NW07 568 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 PTTG2Q9NZH5 202 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 MARCH4Q9P2E8 410 aaPredicted RBP12.76□□□□□ -0.37
CLK3-201ENST00000345005 PSMD13Q9UNM6 376 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 RUVBL2Q9Y230 463 aaKnown RBP12.76□□□□□ -0.37
CLK3-201ENST00000345005 VWA7Q9Y334 891 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 SCN8AQ9UQD0 1980 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 ARHGAP10A1A4S6 786 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 PFDN6O15212 129 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms