RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 SYTL2Q9HCH5 934 aa19.26■□□□□ 0.67
COL9A3-201ENST00000343916 SPAG4Q9NPE6 437 aa19.26■□□□□ 0.67
COL9A3-201ENST00000343916 ETAA1Q9NY74 926 aa19.26■□□□□ 0.67
COL9A3-201ENST00000343916 TRPM5Q9NZQ8 1165 aa19.26■□□□□ 0.67
COL9A3-201ENST00000343916 AK5Q9Y6K8 562 aa19.26■□□□□ 0.67
COL9A3-201ENST00000343916 HOXA2O43364 376 aa19.26■□□□□ 0.67
COL9A3-201ENST00000343916 TMCC1O94876 653 aa19.26■□□□□ 0.67
COL9A3-201ENST00000343916 CLCQ05315 142 aa19.26■□□□□ 0.67
COL9A3-201ENST00000343916 RARS2Q5T160 578 aaKnown RBP19.26■□□□□ 0.67
COL9A3-201ENST00000343916 IL23RQ5VWK5 629 aa19.26■□□□□ 0.67
COL9A3-201ENST00000343916 LIN28BQ6ZN17 250 aaKnown RBP eCLIP19.26■□□□□ 0.67
COL9A3-201ENST00000343916 PLD4Q96BZ4 506 aa19.26■□□□□ 0.67
COL9A3-201ENST00000343916 DERL2Q9GZP9 239 aa19.26■□□□□ 0.67
COL9A3-201ENST00000343916 BCAP29Q9UHQ4 241 aa19.26■□□□□ 0.67
COL9A3-201ENST00000343916 TIMM22Q9Y584 194 aa19.26■□□□□ 0.67
COL9A3-201ENST00000343916 PRSS51A0A1B0GVH4 220 aa19.25■□□□□ 0.67
COL9A3-201ENST00000343916 LCHNA4D1U4 455 aa19.25■□□□□ 0.67
COL9A3-201ENST00000343916 BTN3A1O00481 513 aa19.25■□□□□ 0.67
COL9A3-201ENST00000343916 TRIM24O15164 1050 aa19.25■□□□□ 0.67
COL9A3-201ENST00000343916 RNASEH2AO75792 299 aaKnown RBP19.25■□□□□ 0.67
COL9A3-201ENST00000343916 FGF4P08620 206 aa19.25■□□□□ 0.67
COL9A3-201ENST00000343916 BMP1P13497 986 aa19.25■□□□□ 0.67
COL9A3-201ENST00000343916 LPOP22079 712 aaPredicted RBP19.25■□□□□ 0.67
COL9A3-201ENST00000343916 GPX3P22352 226 aa19.25■□□□□ 0.67
COL9A3-201ENST00000343916 MZF1P28698 734 aaPredicted RBP19.25■□□□□ 0.67
COL9A3-201ENST00000343916 PRDX3P30048 256 aaKnown RBP19.25■□□□□ 0.67
COL9A3-201ENST00000343916 STX1BP61266 288 aa19.25■□□□□ 0.67
COL9A3-201ENST00000343916 RAD51Q06609 339 aa19.25■□□□□ 0.67
COL9A3-201ENST00000343916 TAF12Q16514 161 aa19.25■□□□□ 0.67
COL9A3-201ENST00000343916 ZRANB3Q5FWF4 1079 aa19.25■□□□□ 0.67
COL9A3-201ENST00000343916 KLHDC10Q6PID8 442 aa19.25■□□□□ 0.67
COL9A3-201ENST00000343916 CYP2R1Q6VVX0 501 aa19.25■□□□□ 0.67
COL9A3-201ENST00000343916 RETREG3Q86VR2 466 aa19.25■□□□□ 0.67
COL9A3-201ENST00000343916 FUBP1Q96AE4 644 aaKnown RBP19.25■□□□□ 0.67
COL9A3-201ENST00000343916 CFHR5Q9BXR6 569 aa19.25■□□□□ 0.67
COL9A3-201ENST00000343916 IL1RL2Q9HB29 575 aa19.25■□□□□ 0.67
COL9A3-201ENST00000343916 TBC1D30Q9Y2I9 924 aa19.25■□□□□ 0.67
COL9A3-201ENST00000343916 ARIH1Q9Y4X5 557 aaPredicted RBP19.25■□□□□ 0.67
COL9A3-201ENST00000343916 A0A0J9YYE9 177 aa19.25■□□□□ 0.67
COL9A3-201ENST00000343916 A0A1B0GVG6 124 aa19.25■□□□□ 0.67
COL9A3-201ENST00000343916 NR5A2O00482 541 aa19.25■□□□□ 0.67
COL9A3-201ENST00000343916 GSTT1P30711 240 aa19.25■□□□□ 0.67
COL9A3-201ENST00000343916 TWF1Q12792 350 aa19.25■□□□□ 0.67
COL9A3-201ENST00000343916 TLR1Q15399 786 aa19.25■□□□□ 0.67
COL9A3-201ENST00000343916 KANK2Q63ZY3 851 aa19.25■□□□□ 0.67
COL9A3-201ENST00000343916 DLG3Q92796 817 aa19.25■□□□□ 0.67
COL9A3-201ENST00000343916 TUBGCP3Q96CW5 907 aa19.25■□□□□ 0.67
COL9A3-201ENST00000343916 FAM192AQ9GZU8 254 aa19.25■□□□□ 0.67
COL9A3-201ENST00000343916 SARDHQ9UL12 918 aa19.25■□□□□ 0.67
COL9A3-201ENST00000343916 IQCF5A8MTL0 148 aa19.24■□□□□ 0.67
COL9A3-201ENST00000343916 PRAMEF12O95522 483 aa19.24■□□□□ 0.67
COL9A3-201ENST00000343916 APLP1P51693 650 aa19.24■□□□□ 0.67
COL9A3-201ENST00000343916 ATN1P54259 1190 aaPredicted RBP19.24■□□□□ 0.67
COL9A3-201ENST00000343916 PDK3Q15120 406 aa19.24■□□□□ 0.67
COL9A3-201ENST00000343916 CTSL3PQ5NE16 218 aa19.24■□□□□ 0.67
COL9A3-201ENST00000343916 PHYKPLQ8IUZ5 450 aa19.24■□□□□ 0.67
COL9A3-201ENST00000343916 REM2Q8IYK8 340 aaPredicted RBP19.24■□□□□ 0.67
COL9A3-201ENST00000343916 CARNMT1Q8N4J0 409 aa19.24■□□□□ 0.67
COL9A3-201ENST00000343916 SARS2Q9NP81 518 aaKnown RBP19.24■□□□□ 0.67
COL9A3-201ENST00000343916 MRGBPQ9NV56 204 aa19.24■□□□□ 0.67
COL9A3-201ENST00000343916 SUCOQ9UBS9 1254 aaKnown RBP19.24■□□□□ 0.67
COL9A3-201ENST00000343916 TSR3Q9UJK0 312 aaKnown RBP19.24■□□□□ 0.67
COL9A3-201ENST00000343916 PCDHGB4Q9UN71 923 aa19.24■□□□□ 0.67
COL9A3-201ENST00000343916 PCDHGB5Q9Y5G0 923 aa19.24■□□□□ 0.67
COL9A3-201ENST00000343916 PITPNM1O00562 1244 aa19.24■□□□□ 0.67
COL9A3-201ENST00000343916 PSMD8P48556 350 aa19.24■□□□□ 0.67
COL9A3-201ENST00000343916 SLC7A2P52569 658 aa19.24■□□□□ 0.67
COL9A3-201ENST00000343916 HTRA3P83110 453 aa19.24■□□□□ 0.67
COL9A3-201ENST00000343916 CNPY1Q3B7I2 92 aa19.24■□□□□ 0.67
COL9A3-201ENST00000343916 VPS26BQ4G0F5 336 aa19.24■□□□□ 0.67
COL9A3-201ENST00000343916 GALNT4Q8N4A0 578 aa19.24■□□□□ 0.67
COL9A3-201ENST00000343916 DCBLD1Q8N8Z6 715 aa19.24■□□□□ 0.67
COL9A3-201ENST00000343916 ZNF461Q8TAF7 563 aa19.24■□□□□ 0.67
COL9A3-201ENST00000343916 ASB2Q96Q27 587 aa19.24■□□□□ 0.67
COL9A3-201ENST00000343916 SLC22A12Q96S37 553 aa19.24■□□□□ 0.67
COL9A3-201ENST00000343916 SEMA6AQ9H2E6 1030 aa19.24■□□□□ 0.67
COL9A3-201ENST00000343916 CWH43Q9H720 699 aa19.24■□□□□ 0.67
COL9A3-201ENST00000343916 EPS15L1Q9UBC2 864 aa19.24■□□□□ 0.67
COL9A3-201ENST00000343916 POLG2Q9UHN1 485 aa19.24■□□□□ 0.67
COL9A3-201ENST00000343916 CROTQ9UKG9 612 aa19.24■□□□□ 0.67
COL9A3-201ENST00000343916 FCF1Q9Y324 198 aaKnown RBP19.24■□□□□ 0.67
COL9A3-201ENST00000343916 GBF1Q92538 1859 aa19.23■□□□□ 0.67
COL9A3-201ENST00000343916 HGFP14210 728 aa19.23■□□□□ 0.67
COL9A3-201ENST00000343916 LCP2Q13094 533 aa19.23■□□□□ 0.67
COL9A3-201ENST00000343916 ATXN7L2Q5T6C5 722 aaPredicted RBP19.23■□□□□ 0.67
COL9A3-201ENST00000343916 UGT3A1Q6NUS8 523 aa19.23■□□□□ 0.67
COL9A3-201ENST00000343916 CHST9Q7L1S5 443 aa19.23■□□□□ 0.67
COL9A3-201ENST00000343916 TMCO2Q7Z6W1 182 aaPredicted RBP19.23■□□□□ 0.67
COL9A3-201ENST00000343916 EEF1AKMT1Q8WVE0 214 aa19.23■□□□□ 0.67
COL9A3-201ENST00000343916 OVCA2Q8WZ82 227 aa19.23■□□□□ 0.67
COL9A3-201ENST00000343916 IGSF21Q96ID5 467 aa19.23■□□□□ 0.67
COL9A3-201ENST00000343916 BTBD9Q96Q07 612 aa19.23■□□□□ 0.67
COL9A3-201ENST00000343916 KLF16Q9BXK1 252 aaPredicted RBP19.23■□□□□ 0.67
COL9A3-201ENST00000343916 AFF4Q9UHB7 1163 aaKnown RBP19.23■□□□□ 0.67
COL9A3-201ENST00000343916 ASB1Q9Y576 335 aa19.23■□□□□ 0.67
COL9A3-201ENST00000343916 OAS3Q9Y6K5 1087 aaKnown RBP19.23■□□□□ 0.67
COL9A3-201ENST00000343916 H0Y626 953 aa19.23■□□□□ 0.67
COL9A3-201ENST00000343916 STX7O15400 261 aaKnown RBP19.23■□□□□ 0.67
COL9A3-201ENST00000343916 CSPG5O95196 566 aa19.23■□□□□ 0.67
COL9A3-201ENST00000343916 TSPAN12O95859 305 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms