RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 PPARGP37231 505 aaPredicted RBP13.3□□□□□ -0.28
HMGB1-202ENST00000339872 CCR10P46092 362 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 VASPP50552 380 aaPredicted RBP13.3□□□□□ -0.28
HMGB1-202ENST00000339872 PTSQ03393 145 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 RCN2Q14257 317 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 CHRNA6Q15825 494 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 SETMARQ53H47 684 aaPredicted RBP13.3□□□□□ -0.28
HMGB1-202ENST00000339872 ATAT1Q5SQI0 421 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 COL13A1Q5TAT6 717 aaPredicted RBP13.3□□□□□ -0.28
HMGB1-202ENST00000339872 ISCA2Q86U28 154 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 YAF2Q8IY57 180 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 CBARPQ8N350 705 aaPredicted RBP13.3□□□□□ -0.28
HMGB1-202ENST00000339872 CCNYL1Q8N7R7 359 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 AGR3Q8TD06 166 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 EXT2Q93063 718 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 PTERQ96BW5 349 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 CCDC97Q96F63 343 aaPredicted RBP13.3□□□□□ -0.28
HMGB1-202ENST00000339872 MYADMQ96S97 322 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 TTC1Q99614 292 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 KXD1Q9BQD3 176 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 DRC3Q9H069 523 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 GALPQ9UBC7 116 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 CRLS1Q9UJA2 301 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 TRMT6Q9UJA5 497 aaKnown RBP13.3□□□□□ -0.28
HMGB1-202ENST00000339872 PRDM4Q9UKN5 801 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 NUMBLQ9Y6R0 609 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 A8MT66 165 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 H3BMM5 538 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 PRMT5O14744 637 aaPredicted RBP13.3□□□□□ -0.28
HMGB1-202ENST00000339872 C1SP09871 688 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 UGT1A6P19224 532 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 CHRM3P20309 590 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 UGT1A1P22309 533 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 UGT1A4P22310 534 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 KCNA5P22460 613 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 UGT1A3P35503 534 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 UGT1A5P35504 534 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 ADARP55265 1226 aaKnown RBP13.3□□□□□ -0.28
HMGB1-202ENST00000339872 ACTN3Q08043 901 aaPredicted RBP13.3□□□□□ -0.28
HMGB1-202ENST00000339872 FCHO2Q0JRZ9 810 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 BNIP1Q12981 228 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 POM121L1PQ3SYA9 428 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 HSF5Q4G112 596 aaPredicted RBP13.3□□□□□ -0.28
HMGB1-202ENST00000339872 FNDC3BQ53EP0 1204 aaKnown RBP13.3□□□□□ -0.28
HMGB1-202ENST00000339872 NAIF1Q69YI7 327 aaPredicted RBP13.3□□□□□ -0.28
HMGB1-202ENST00000339872 CES5AQ6NT32 575 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 EP400NLQ6ZTU2 488 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 ALYREFQ86V81 257 aaKnown RBP13.3□□□□□ -0.28
HMGB1-202ENST00000339872 CPA6Q8N4T0 437 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 SIDT2Q8NBJ9 832 aaKnown RBP13.3□□□□□ -0.28
HMGB1-202ENST00000339872 SKA1Q96BD8 255 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 SLC30A3Q99726 388 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 SIKE1Q9BRV8 207 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 OSBPL1AQ9BXW6 950 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 PLA2G2FQ9BZM2 168 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 CLPBQ9H078 707 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 P2RY12Q9H244 342 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 SARS2Q9NP81 518 aaKnown RBP13.3□□□□□ -0.28
HMGB1-202ENST00000339872 GTSE1Q9NYZ3 720 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 COMMD10Q9Y6G5 202 aa13.3□□□□□ -0.28
HMGB1-202ENST00000339872 OAS3Q9Y6K5 1087 aaKnown RBP13.3□□□□□ -0.28
HMGB1-202ENST00000339872 TCF20Q9UGU0 1960 aaKnown RBP13.3□□□□□ -0.28
HMGB1-202ENST00000339872 PLXNB3Q9ULL4 1909 aa13.29□□□□□ -0.28
HMGB1-202ENST00000339872 IQCF5A8MTL0 148 aa13.29□□□□□ -0.28
HMGB1-202ENST00000339872 ZNF7P17097 686 aaPredicted RBP13.29□□□□□ -0.28
HMGB1-202ENST00000339872 ACRV1P26436 265 aa13.29□□□□□ -0.28
HMGB1-202ENST00000339872 ARHGEF7Q14155 803 aa13.29□□□□□ -0.28
HMGB1-202ENST00000339872 SFTPA1Q8IWL2 248 aa13.29□□□□□ -0.28
HMGB1-202ENST00000339872 RBFAQ8N0V3 343 aa13.29□□□□□ -0.28
HMGB1-202ENST00000339872 NAT14Q8WUY8 206 aa13.29□□□□□ -0.28
HMGB1-202ENST00000339872 KCNJ9Q92806 393 aa13.29□□□□□ -0.28
HMGB1-202ENST00000339872 CCDC126Q96EE4 140 aa13.29□□□□□ -0.28
HMGB1-202ENST00000339872 RILPQ96NA2 401 aa13.29□□□□□ -0.28
HMGB1-202ENST00000339872 EBF4Q9BQW3 602 aa13.29□□□□□ -0.28
HMGB1-202ENST00000339872 BOCQ9BWV1 1114 aa13.29□□□□□ -0.28
HMGB1-202ENST00000339872 CLEC1BQ9P126 229 aa13.29□□□□□ -0.28
HMGB1-202ENST00000339872 TRBV5-4A0A0C4DH59 114 aa13.29□□□□□ -0.28
HMGB1-202ENST00000339872 UPK3BL1B0FP48 263 aa13.29□□□□□ -0.28
HMGB1-202ENST00000339872 UPK3BL2E5RIL1 263 aa13.29□□□□□ -0.28
HMGB1-202ENST00000339872 F8W8V4 182 aa13.29□□□□□ -0.28
HMGB1-202ENST00000339872 IPO13O94829 963 aaKnown RBP13.29□□□□□ -0.28
HMGB1-202ENST00000339872 FSBPO95073 299 aa13.29□□□□□ -0.28
HMGB1-202ENST00000339872 CYP2A6P11509 494 aaPredicted RBP13.29□□□□□ -0.28
HMGB1-202ENST00000339872 HLA-EP13747 358 aa13.29□□□□□ -0.28
HMGB1-202ENST00000339872 MPSTP25325 297 aa13.29□□□□□ -0.28
HMGB1-202ENST00000339872 KCNC1P48547 511 aa13.29□□□□□ -0.28
HMGB1-202ENST00000339872 DNAJB13P59910 316 aa13.29□□□□□ -0.28
HMGB1-202ENST00000339872 ADAM15Q13444 863 aa13.29□□□□□ -0.28
HMGB1-202ENST00000339872 RUNX3Q13761 415 aa13.29□□□□□ -0.28
HMGB1-202ENST00000339872 OR4D1Q15615 310 aa13.29□□□□□ -0.28
HMGB1-202ENST00000339872 ARL13AQ5H913 290 aaPredicted RBP13.29□□□□□ -0.28
HMGB1-202ENST00000339872 CFAP157Q5JU67 520 aa13.29□□□□□ -0.28
HMGB1-202ENST00000339872 PTRHD1Q6GMV3 140 aaKnown RBP13.29□□□□□ -0.28
HMGB1-202ENST00000339872 TRIM67Q6ZTA4 783 aa13.29□□□□□ -0.28
HMGB1-202ENST00000339872 RFLNAQ6ZTI6 216 aa13.29□□□□□ -0.28
HMGB1-202ENST00000339872 CLNKQ7Z7G1 428 aa13.29□□□□□ -0.28
HMGB1-202ENST00000339872 TERB1Q8NA31 727 aa13.29□□□□□ -0.28
HMGB1-202ENST00000339872 GIMAP7Q8NHV1 300 aa13.29□□□□□ -0.28
HMGB1-202ENST00000339872 CD200R1Q8TD46 325 aa13.29□□□□□ -0.28
HMGB1-202ENST00000339872 PHF21BQ96EK2 531 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms