RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 RPIAP49247 311 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 PRKD1Q15139 912 aaPredicted RBP6.83□□□□□ -1.32
SF3B1-201ENST00000335508 ATP13A5Q4VNC0 1218 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 TIFABQ6ZNK6 161 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 HTR3DQ70Z44 454 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 R3HCC1LQ7Z5L2 792 aaKnown RBP6.83□□□□□ -1.32
SF3B1-201ENST00000335508 VPS33AQ96AX1 596 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 FAM120BQ96EK7 910 aaKnown RBP6.83□□□□□ -1.32
SF3B1-201ENST00000335508 LINGO1Q96FE5 620 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 SCRN2Q96FV2 425 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 TMEM120AQ9BXJ8 343 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 MCOLN1Q9GZU1 580 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 ING2Q9H160 280 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 B4GALT6Q9UBX8 382 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 KLQ9UEF7 1012 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 SCOCQ9UIL1 159 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 SCML1Q9UN30 329 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 FAF1Q9UNN5 650 aaPredicted RBP6.83□□□□□ -1.32
SF3B1-201ENST00000335508 TRAF6Q9Y4K3 522 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 PAPPA2Q9BXP8 1791 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 TSPAN6O43657 245 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 NUDT1P36639 197 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 ASMTP46597 345 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 DEFB103AP81534 67 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 TRIP10Q15642 601 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 EOGTQ5NDL2 527 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 DCAF12L1Q5VU92 463 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 ZC3HC1Q86WB0 502 aaKnown RBP6.83□□□□□ -1.32
SF3B1-201ENST00000335508 CACUL1Q86Y37 369 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 GALNT13Q8IUC8 556 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 MIER2Q8N344 545 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 KIAA1958Q8N8K9 716 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 DLG3Q92796 817 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 NSMCE2Q96MF7 247 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 CASD1Q96PB1 797 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 C8orf33Q9H7E9 229 aaPredicted RBP6.83□□□□□ -1.32
SF3B1-201ENST00000335508 SLC2A4RGQ9NR83 387 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 KLHL42Q9P2K6 505 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 BHMG1C9JSJ3 638 aaPredicted RBP6.83□□□□□ -1.32
SF3B1-201ENST00000335508 E9PBE3 544 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 FPGTO14772 594 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 KLHL41O60662 606 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 NDUFS2O75306 463 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 PRPS2P11908 318 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 SERPINB3P29508 390 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 ACVRL1P37023 503 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 NUDT2P50583 147 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 CORO7P57737 925 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 MTDHQ86UE4 582 aaKnown RBP6.83□□□□□ -1.32
SF3B1-201ENST00000335508 SERPINA9Q86WD7 417 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 OR14C36Q8NHC7 312 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 EME1Q96AY2 570 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 ISG20Q96AZ6 181 aaKnown RBP6.83□□□□□ -1.32
SF3B1-201ENST00000335508 RHOBTB2Q9BYZ6 727 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 ECT2Q9H8V3 914 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 CERS4Q9HA82 394 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 POPDC3Q9HBV1 291 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 RABGEF1Q9UJ41 708 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 LEF1Q9UJU2 399 aaPredicted RBP6.83□□□□□ -1.32
SF3B1-201ENST00000335508 ZNF711Q9Y462 761 aa6.83□□□□□ -1.32
SF3B1-201ENST00000335508 CCDC162PA2VCL2 907 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 NEMP2A6NFY4 417 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 DCXO43602 365 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 SEC22BO75396 215 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 LYPLA1O75608 230 aaPredicted RBP6.82□□□□□ -1.32
SF3B1-201ENST00000335508 UBOX5O94941 541 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 IDO1P14902 403 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 ICE2Q659A1 982 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 DPY19L3Q6ZPD9 716 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 RD3Q7Z3Z2 195 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 BANPQ8N9N5 519 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 RP9Q8TA86 221 aaKnown RBP6.82□□□□□ -1.32
SF3B1-201ENST00000335508 PWWP2AQ96N64 755 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 LPIN3Q9BQK8 851 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 BTBD1Q9H0C5 482 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 MRM3Q9HC36 420 aaKnown RBP6.82□□□□□ -1.32
SF3B1-201ENST00000335508 FCF1Q9Y324 198 aaKnown RBP6.82□□□□□ -1.32
SF3B1-201ENST00000335508 TCRBV5S1A1TA0A578 114 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 FAM92AA1XBS5 289 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 KCNJ13O60928 360 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 SHBGP04278 402 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 GJA1P17302 382 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 CDH13P55290 713 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 ZNF252P-AS1Q0IIN9 211 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 RUNX3Q13761 415 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 NFYCQ13952 458 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 LRRC32Q14392 662 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 GALNT3Q14435 633 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 TCEA2Q15560 299 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 TEAD2Q15562 447 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 FNBP1LQ5T0N5 605 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 RASIP1Q5U651 963 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 SULT1C3Q6IMI6 304 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 DPY19L2P1Q6NXN4 242 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 ZFP1Q6P2D0 407 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 C16orf46Q6P387 395 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 Q6ZVL8 140 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 Q6ZVU0 165 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 ZNF438Q7Z4V0 828 aa6.82□□□□□ -1.32
SF3B1-201ENST00000335508 AMZ2Q86W34 360 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms