RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 WDR92Q96MX6 357 aa1.54□□□□□ -2.16
LINC00643-201ENST00000334389 FDXACB1Q9BRP7 624 aaPredicted RBP1.54□□□□□ -2.16
LINC00643-201ENST00000334389 CCM2Q9BSQ5 444 aa1.54□□□□□ -2.16
LINC00643-201ENST00000334389 SLC25A23Q9BV35 468 aa1.54□□□□□ -2.16
LINC00643-201ENST00000334389 HDHD5Q9BXW7 423 aa1.54□□□□□ -2.16
LINC00643-201ENST00000334389 FOXP3Q9BZS1 431 aa1.54□□□□□ -2.16
LINC00643-201ENST00000334389 DNAJC17Q9NVM6 304 aaKnown RBP1.54□□□□□ -2.16
LINC00643-201ENST00000334389 MTRF1LQ9UGC7 380 aaKnown RBP1.54□□□□□ -2.16
LINC00643-201ENST00000334389 GPR34Q9UPC5 381 aa1.54□□□□□ -2.16
LINC00643-201ENST00000334389 ASB1Q9Y576 335 aa1.54□□□□□ -2.16
LINC00643-201ENST00000334389 AK5Q9Y6K8 562 aa1.54□□□□□ -2.16
LINC00643-201ENST00000334389 MYO10Q9HD67 2058 aa1.54□□□□□ -2.16
LINC00643-201ENST00000334389 SLC22A31A6NKX4 558 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 FAM196BA6NMK8 535 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 DBX1A6NMT0 343 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 TARM1B6A8C7 271 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 TISP43B9A030 160 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 F8VP50 259 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 ZMPSTE24O75844 475 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 STC2O76061 302 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 PGM3O95394 542 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 CD48P09326 243 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 JMJD7P0C870 316 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 RALAP11233 206 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 FGF3P11487 239 aaPredicted RBP1.53□□□□□ -2.16
LINC00643-201ENST00000334389 PABPC1P11940 636 aaKnown RBP1.53□□□□□ -2.16
LINC00643-201ENST00000334389 CPN1P15169 458 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 EIF2AK2P19525 551 aaKnown RBP1.53□□□□□ -2.16
LINC00643-201ENST00000334389 ABCB4P21439 1286 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 TUBG1P23258 451 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 VAMP1P23763 118 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 SLC8A1P32418 973 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 GABRB2P47870 512 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 VEGFCP49767 419 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 ART1P52961 327 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 SRSF5Q13243 272 aaKnown RBP1.53□□□□□ -2.16
LINC00643-201ENST00000334389 SAFBQ15424 915 aaKnown RBP eCLIP1.53□□□□□ -2.16
LINC00643-201ENST00000334389 SYCP1Q15431 976 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 TCEA2Q15560 299 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 NTRK3Q16288 839 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 KRT24Q2M2I5 525 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 CCDC38Q502W7 563 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 GPRC6AQ5T6X5 926 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 ADALQ6DHV7 355 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 PIK3AP1Q6ZUJ8 805 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 C1orf186Q6ZWK4 172 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 RBM23Q86U06 439 aaKnown RBP1.53□□□□□ -2.16
LINC00643-201ENST00000334389 CUZD1Q86UP6 607 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 SMC5Q8IY18 1101 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 SLC35F3Q8IY50 421 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 ADGRF2Q8IZF7 708 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 AADATQ8N5Z0 425 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 ZBTB2Q8N680 514 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 SLC4A11Q8NBS3 891 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 FBXL13Q8NEE6 735 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 WFDC9Q8NEX5 89 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 CFAP61Q8NHU2 1237 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 NCOA7Q8NI08 942 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 GDAP1Q8TB36 358 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 PRPF31Q8WWY3 499 aaKnown RBP1.53□□□□□ -2.16
LINC00643-201ENST00000334389 ZNF592Q92610 1267 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 SYAP1Q96A49 352 aaPredicted RBP1.53□□□□□ -2.16
LINC00643-201ENST00000334389 ATXN7L3BQ96GX2 97 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 BMFQ96LC9 184 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 NOL4LQ96MY1 436 aaPredicted RBP1.53□□□□□ -2.16
LINC00643-201ENST00000334389 FIZ1Q96SL8 496 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 TCF12Q99081 682 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 ZNF559Q9BR84 538 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 ANP32EQ9BTT0 268 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 CDC42EP4Q9H3Q1 356 aaKnown RBP1.53□□□□□ -2.16
LINC00643-201ENST00000334389 EBF3Q9H4W6 596 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 ZNF552Q9H707 407 aaPredicted RBP1.53□□□□□ -2.16
LINC00643-201ENST00000334389 SEBOXQ9HB31 216 aaPredicted RBP1.53□□□□□ -2.16
LINC00643-201ENST00000334389 OBP2BQ9NPH6 170 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 LHX9Q9NQ69 397 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 TUBG2Q9NRH3 451 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 HCFC1R1Q9NWW0 138 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 CHCHD3Q9NX63 227 aaKnown RBP1.53□□□□□ -2.16
LINC00643-201ENST00000334389 NDRG2Q9UN36 371 aaKnown RBP1.53□□□□□ -2.16
LINC00643-201ENST00000334389 PLEKHM1Q9Y4G2 1056 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 COPG1Q9Y678 874 aaKnown RBP1.53□□□□□ -2.16
LINC00643-201ENST00000334389 MUC17Q685J3 4493 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 KCNE1BA0A087WTH5 132 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 IGLV3-32A0A0A0MS00 114 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 FAM237AA0A1B0GTK4 181 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP1.53□□□□□ -2.16
LINC00643-201ENST00000334389 AGAP14A8MT82 685 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 TXNDC9O14530 226 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 APAF1O14727 1248 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 FRS3O43559 492 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 CLDN11O75508 207 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 ADH4P08319 380 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 QDPRP09417 244 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 BMP2P12643 396 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 SKILP12757 684 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 VAV1P15498 845 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 ANXA13P27216 316 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 YWHAQP27348 245 aa1.53□□□□□ -2.16
LINC00643-201ENST00000334389 ADSLP30566 484 aaPredicted RBP1.53□□□□□ -2.16
LINC00643-201ENST00000334389 PPP1R2P41236 205 aa1.53□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms