RNA–Protein interactions for RNA: ENST00000261517.9

VPS13C-202, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 13,400 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-202ENST00000261517 GSRP00390 522 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 PDHA1P08559 390 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 ZSCAN5DPP0CG00 497 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 COX4I1P13073 169 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 GSTM3P21266 225 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 MTHFRP42898 656 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 ALDH9A1P49189 494 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 GNA12Q03113 381 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 CHMP1BQ7LBR1 199 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 CMTR2Q8IYT2 770 aaKnown RBP4.3□□□□□ -1.72
VPS13C-202ENST00000261517 C10orf53Q8N6V4 93 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 ZNF513Q8N8E2 541 aaPredicted RBP4.3□□□□□ -1.72
VPS13C-202ENST00000261517 ZNF527Q8NB42 609 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 B3GALT6Q96L58 329 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 RANBP9Q96S59 729 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 FAM83CQ9BQN1 747 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 IL25Q9H293 177 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 BRD9Q9H8M2 597 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 NEUROD4Q9HD90 331 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 SNX15Q9NRS6 342 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 ANKRD63C9JTQ0 380 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 ZNF623O75123 536 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 SLC25A12O75746 678 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 LILRA4P59901 499 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 TUBA3CQ13748 450 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 PDZK1Q5T2W1 519 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 RANBP3LQ86VV4 465 aaPredicted RBP4.3□□□□□ -1.72
VPS13C-202ENST00000261517 GPR135Q8IZ08 494 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 PHF10Q8WUB8 498 aaKnown RBP4.3□□□□□ -1.72
VPS13C-202ENST00000261517 IPCEF1Q8WWN9 437 aaPredicted RBP4.3□□□□□ -1.72
VPS13C-202ENST00000261517 AP2M1Q96CW1 435 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 TSGA13Q96PP4 275 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 S100A13Q99584 98 aa4.3□□□□□ -1.72
VPS13C-202ENST00000261517 CLEC4MQ9H2X3 399 aaPredicted RBP4.3□□□□□ -1.72
VPS13C-202ENST00000261517 AGO3Q9H9G7 860 aaKnown RBP4.3□□□□□ -1.72
VPS13C-202ENST00000261517 TUBA8Q9NY65 449 aaPredicted RBP4.3□□□□□ -1.72
VPS13C-202ENST00000261517 F8VP50 259 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 M0R2N6 131 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 ATP6V1G2O95670 118 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 ZNF682O95780 498 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 CCDC166P0CW27 439 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 ATP6V1B2P21281 511 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 OXTRP30559 389 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 SERINC3Q13530 473 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 EIF4HQ15056 248 aaKnown RBP4.29□□□□□ -1.72
VPS13C-202ENST00000261517 SGO1Q5FBB7 561 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 RPL13AP3Q6NVV1 102 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 CHST15Q7LFX5 561 aaPredicted RBP4.29□□□□□ -1.72
VPS13C-202ENST00000261517 GALNT7Q86SF2 657 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 WDR36Q8NI36 951 aaKnown RBP4.29□□□□□ -1.72
VPS13C-202ENST00000261517 ZBED6CLQ96FA7 236 aaPredicted RBP4.29□□□□□ -1.72
VPS13C-202ENST00000261517 GINS4Q9BRT9 223 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 PRDM12Q9H4Q4 367 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 COL18A1P39060 1754 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 TCRBV9S1A1TA0A576 114 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 STX16-NPEPL1H3BU86 382 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 PSMD11O00231 422 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 STX16O14662 325 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 DHX15O43143 795 aaKnown RBP4.29□□□□□ -1.72
VPS13C-202ENST00000261517 COQ9O75208 318 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 SERPINA3P01011 423 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 GNAZP19086 355 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 TACR2P21452 398 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 GJA9P57773 515 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 CMASQ8NFW8 434 aaPredicted RBP4.29□□□□□ -1.72
VPS13C-202ENST00000261517 BHMTQ93088 406 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 TP53INP1Q96A56 240 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 TMEM79Q9BSE2 394 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 SP140LQ9H930 580 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 DMGDHQ9UI17 866 aaKnown RBP4.29□□□□□ -1.72
VPS13C-202ENST00000261517 FZD10Q9ULW2 581 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 PSMD13Q9UNM6 376 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 ADM5C9JUS6 153 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 KRT36O76013 467 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 GJB6O95452 261 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 C22orf31O95567 290 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 CXCL14O95715 111 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 AKAP5P24588 427 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 RPL5P46777 297 aaKnown RBP4.29□□□□□ -1.72
VPS13C-202ENST00000261517 ERVK-21P61565 698 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 SUZ12Q15022 739 aaKnown RBP4.29□□□□□ -1.72
VPS13C-202ENST00000261517 RAET1GQ6H3X3 334 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 C11orf65Q8NCR3 313 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 RAD51AP1Q96B01 352 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 REXO5Q96IC2 774 aaKnown RBP4.29□□□□□ -1.72
VPS13C-202ENST00000261517 ZDHHC6Q9H6R6 413 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 TLE6Q9H808 572 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 RMI1Q9H9A7 625 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 LRRC4CQ9HCJ2 640 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 NOCTQ9UK39 431 aaKnown RBP4.29□□□□□ -1.72
VPS13C-202ENST00000261517 SPIN1Q9Y657 262 aaPredicted RBP4.29□□□□□ -1.72
VPS13C-202ENST00000261517 A0A087X0B3 334 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 TMX2-CTNND1H3BSU7 103 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 PIGNO95427 931 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 DNAJB13P59910 316 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 FPGSQ05932 587 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 FAAP100Q0VG06 881 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 TRAF2Q12933 501 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 KLHL12Q53G59 568 aa4.29□□□□□ -1.72
VPS13C-202ENST00000261517 SCIMPQ6UWF3 145 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms