RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 SERPINF2P08697 491 aa21.2■□□□□ 0.98
TRIM28-201ENST00000253024 SLC7A1P30825 629 aa21.2■□□□□ 0.98
TRIM28-201ENST00000253024 STT3AP46977 705 aa21.2■□□□□ 0.98
TRIM28-201ENST00000253024 TWF1Q12792 350 aa21.2■□□□□ 0.98
TRIM28-201ENST00000253024 DYNC1I2Q13409 638 aaKnown RBP21.2■□□□□ 0.98
TRIM28-201ENST00000253024 SERINC3Q13530 473 aa21.2■□□□□ 0.98
TRIM28-201ENST00000253024 LPCAT2Q7L5N7 544 aa21.2■□□□□ 0.98
TRIM28-201ENST00000253024 MRPL10Q7Z7H8 261 aaKnown RBP21.2■□□□□ 0.98
TRIM28-201ENST00000253024 ATP6V0D2Q8N8Y2 350 aa21.2■□□□□ 0.98
TRIM28-201ENST00000253024 TSPAN18Q96SJ8 248 aa21.2■□□□□ 0.98
TRIM28-201ENST00000253024 PREBQ9HCU5 417 aa21.2■□□□□ 0.98
TRIM28-201ENST00000253024 OLAHQ9NV23 265 aa21.2■□□□□ 0.98
TRIM28-201ENST00000253024 TMEM248Q9NWD8 314 aa21.2■□□□□ 0.98
TRIM28-201ENST00000253024 CD274Q9NZQ7 290 aa21.2■□□□□ 0.98
TRIM28-201ENST00000253024 ASLP04424 464 aa21.19■□□□□ 0.98
TRIM28-201ENST00000253024 FDXRP22570 491 aa21.19■□□□□ 0.98
TRIM28-201ENST00000253024 SLC6A2P23975 617 aa21.19■□□□□ 0.98
TRIM28-201ENST00000253024 ADSLP30566 484 aaPredicted RBP21.19■□□□□ 0.98
TRIM28-201ENST00000253024 DGKQP52824 942 aa21.19■□□□□ 0.98
TRIM28-201ENST00000253024 MTPNP58546 118 aa21.19■□□□□ 0.98
TRIM28-201ENST00000253024 SLC2A7Q6PXP3 512 aa21.19■□□□□ 0.98
TRIM28-201ENST00000253024 SYVN1Q86TM6 617 aa21.19■□□□□ 0.98
TRIM28-201ENST00000253024 SNRNP27Q8WVK2 155 aaKnown RBP21.19■□□□□ 0.98
TRIM28-201ENST00000253024 FAR2Q96K12 515 aa21.19■□□□□ 0.98
TRIM28-201ENST00000253024 MRM3Q9HC36 420 aaKnown RBP21.19■□□□□ 0.98
TRIM28-201ENST00000253024 DUS2Q9NX74 493 aaKnown RBP21.19■□□□□ 0.98
TRIM28-201ENST00000253024 FXYD1O00168 92 aa21.19■□□□□ 0.98
TRIM28-201ENST00000253024 ARPC2O15144 300 aa21.19■□□□□ 0.98
TRIM28-201ENST00000253024 CNPP09543 421 aaKnown RBP21.19■□□□□ 0.98
TRIM28-201ENST00000253024 TMED1Q13445 227 aa21.19■□□□□ 0.98
TRIM28-201ENST00000253024 TTC33Q6PID6 262 aaPredicted RBP21.19■□□□□ 0.98
TRIM28-201ENST00000253024 CLVS1Q8IUQ0 354 aaPredicted RBP21.19■□□□□ 0.98
TRIM28-201ENST00000253024 ZNF683Q8IZ20 524 aa21.19■□□□□ 0.98
TRIM28-201ENST00000253024 FNDC5Q8NAU1 212 aa21.19■□□□□ 0.98
TRIM28-201ENST00000253024 OR2T11Q8NH01 316 aa21.19■□□□□ 0.98
TRIM28-201ENST00000253024 EZH1Q92800 747 aaPredicted RBP21.19■□□□□ 0.98
TRIM28-201ENST00000253024 LRRC58Q96CX6 371 aa21.19■□□□□ 0.98
TRIM28-201ENST00000253024 BTN2A3PQ96KV6 586 aa21.19■□□□□ 0.98
TRIM28-201ENST00000253024 HGH1Q9BTY7 390 aa21.19■□□□□ 0.98
TRIM28-201ENST00000253024 EBF1Q9UH73 591 aa21.19■□□□□ 0.98
TRIM28-201ENST00000253024 PCDHB5Q9Y5E4 795 aa21.19■□□□□ 0.98
TRIM28-201ENST00000253024 ZFC3H1O60293 1989 aaKnown RBP21.19■□□□□ 0.98
TRIM28-201ENST00000253024 FFAR3O14843 346 aa21.18■□□□□ 0.98
TRIM28-201ENST00000253024 GPR42O15529 346 aa21.18■□□□□ 0.98
TRIM28-201ENST00000253024 RPP40O75818 363 aaKnown RBP21.18■□□□□ 0.98
TRIM28-201ENST00000253024 C8BP07358 591 aa21.18■□□□□ 0.98
TRIM28-201ENST00000253024 HSPA8P11142 646 aaKnown RBP21.18■□□□□ 0.98
TRIM28-201ENST00000253024 HTR6P50406 440 aa21.18■□□□□ 0.98
TRIM28-201ENST00000253024 PRKCZQ05513 592 aa21.18■□□□□ 0.98
TRIM28-201ENST00000253024 ZNF33AQ06730 810 aa21.18■□□□□ 0.98
TRIM28-201ENST00000253024 TMEM214Q6NUQ4 689 aaKnown RBP21.18■□□□□ 0.98
TRIM28-201ENST00000253024 TAS1R1Q7RTX1 841 aa21.18■□□□□ 0.98
TRIM28-201ENST00000253024 ARNT2Q9HBZ2 717 aa21.18■□□□□ 0.98
TRIM28-201ENST00000253024 ATP13A1Q9HD20 1204 aa21.18■□□□□ 0.98
TRIM28-201ENST00000253024 ZNF225Q9UK10 706 aa21.18■□□□□ 0.98
TRIM28-201ENST00000253024 SLC22A2O15244 555 aa21.18■□□□□ 0.98
TRIM28-201ENST00000253024 SNAP91O60641 907 aa21.18■□□□□ 0.98
TRIM28-201ENST00000253024 PYCR3Q53H96 274 aa21.18■□□□□ 0.98
TRIM28-201ENST00000253024 LCA5Q86VQ0 697 aa21.18■□□□□ 0.98
TRIM28-201ENST00000253024 NCSTNQ92542 709 aa21.18■□□□□ 0.98
TRIM28-201ENST00000253024 ATOH8Q96SQ7 321 aa21.18■□□□□ 0.98
TRIM28-201ENST00000253024 EFHD1Q9BUP0 239 aa21.18■□□□□ 0.98
TRIM28-201ENST00000253024 MTPAPQ9NVV4 582 aaKnown RBP eCLIP21.18■□□□□ 0.988e-11■□□□□ 8
TRIM28-201ENST00000253024 CDC14AQ9UNH5 594 aa21.18■□□□□ 0.98
TRIM28-201ENST00000253024 SCML2Q9UQR0 700 aa21.18■□□□□ 0.98
TRIM28-201ENST00000253024 MED16Q9Y2X0 877 aa21.18■□□□□ 0.98
TRIM28-201ENST00000253024 TCRBV3S1A0A5B6 114 aa21.18■□□□□ 0.98
TRIM28-201ENST00000253024 H6PDO95479 791 aa21.18■□□□□ 0.98
TRIM28-201ENST00000253024 PRAMEF12O95522 483 aa21.18■□□□□ 0.98
TRIM28-201ENST00000253024 LBPP18428 481 aa21.18■□□□□ 0.98
TRIM28-201ENST00000253024 GKP32189 559 aa21.18■□□□□ 0.98
TRIM28-201ENST00000253024 GDF5P43026 501 aa21.18■□□□□ 0.98
TRIM28-201ENST00000253024 TMEM259Q4ZIN3 620 aa21.18■□□□□ 0.98
TRIM28-201ENST00000253024 C17orf99Q6UX52 265 aa21.18■□□□□ 0.98
TRIM28-201ENST00000253024 FIBCD1Q8N539 461 aa21.18■□□□□ 0.98
TRIM28-201ENST00000253024 RNF145Q96MT1 663 aa21.18■□□□□ 0.98
TRIM28-201ENST00000253024 MYRFQ9Y2G1 1151 aa21.18■□□□□ 0.98
TRIM28-201ENST00000253024 ADAM12O43184 909 aa21.17■□□□□ 0.98
TRIM28-201ENST00000253024 CDH2P19022 906 aaPredicted RBP21.17■□□□□ 0.98
TRIM28-201ENST00000253024 TACR2P21452 398 aa21.17■□□□□ 0.98
TRIM28-201ENST00000253024 STC1P52823 247 aa21.17■□□□□ 0.98
TRIM28-201ENST00000253024 IST1P53990 364 aa21.17■□□□□ 0.98
TRIM28-201ENST00000253024 MBTPS1Q14703 1052 aa21.17■□□□□ 0.98
TRIM28-201ENST00000253024 NEDD8Q15843 81 aa21.17■□□□□ 0.98
TRIM28-201ENST00000253024 SETMARQ53H47 684 aaPredicted RBP21.17■□□□□ 0.98
TRIM28-201ENST00000253024 ZNF597Q96LX8 424 aa21.17■□□□□ 0.98
TRIM28-201ENST00000253024 AARSD1Q9BTE6 412 aaKnown RBP21.17■□□□□ 0.98
TRIM28-201ENST00000253024 TRIM62Q9BVG3 475 aa21.17■□□□□ 0.98
TRIM28-201ENST00000253024 CINPQ9BW66 212 aaPredicted RBP21.17■□□□□ 0.98
TRIM28-201ENST00000253024 TM6SF2Q9BZW4 377 aa21.17■□□□□ 0.98
TRIM28-201ENST00000253024 ZNF696Q9H7X3 374 aa21.17■□□□□ 0.98
TRIM28-201ENST00000253024 CEPT1Q9Y6K0 416 aa21.17■□□□□ 0.98
TRIM28-201ENST00000253024 TDRD15B5MCY1 1934 aaKnown RBP21.17■□□□□ 0.98
TRIM28-201ENST00000253024 ZNF23P17027 643 aa21.17■□□□□ 0.98
TRIM28-201ENST00000253024 LRRC23Q53EV4 343 aaPredicted RBP21.17■□□□□ 0.98
TRIM28-201ENST00000253024 LINGO1Q96FE5 620 aa21.17■□□□□ 0.98
TRIM28-201ENST00000253024 RBM38Q9H0Z9 239 aaKnown RBP21.17■□□□□ 0.98
TRIM28-201ENST00000253024 MYO16Q9Y6X6 1858 aa21.16■□□□□ 0.98
TRIM28-201ENST00000253024 LOC285095A0A1B0GVY8 99 aa21.16■□□□□ 0.98
TRIM28-201ENST00000253024 E5RI56 91 aa21.16■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms