RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 ZNF598Q86UK7 904 aaKnown RBP13.59□□□□□ -0.23
LDLR-201ENST00000252444 VN1R2Q8NFZ6 395 aa13.59□□□□□ -0.23
LDLR-201ENST00000252444 CLEC4CQ8WTT0 213 aa13.59□□□□□ -0.23
LDLR-201ENST00000252444 P2RY13Q9BPV8 354 aa13.59□□□□□ -0.23
LDLR-201ENST00000252444 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.59□□□□□ -0.23
LDLR-201ENST00000252444 ANLNQ9NQW6 1124 aa13.59□□□□□ -0.23
LDLR-201ENST00000252444 DTNAQ9Y4J8 743 aa13.59□□□□□ -0.23
LDLR-201ENST00000252444 WDR47O94967 919 aa13.59□□□□□ -0.23
LDLR-201ENST00000252444 HNRNPH2P55795 449 aaKnown RBP13.59□□□□□ -0.23
LDLR-201ENST00000252444 DPY19L1Q2PZI1 675 aa13.59□□□□□ -0.23
LDLR-201ENST00000252444 CERCAMQ5T4B2 595 aa13.59□□□□□ -0.23
LDLR-201ENST00000252444 GSDMCQ9BYG8 508 aa13.59□□□□□ -0.23
LDLR-201ENST00000252444 PAK6Q9NQU5 681 aaPredicted RBP13.59□□□□□ -0.23
LDLR-201ENST00000252444 RPS6KA6Q9UK32 745 aa13.59□□□□□ -0.23
LDLR-201ENST00000252444 PRPF19Q9UMS4 504 aaKnown RBP13.59□□□□□ -0.23
LDLR-201ENST00000252444 MTF2Q9Y483 593 aaPredicted RBP13.59□□□□□ -0.23
LDLR-201ENST00000252444 SYNDIG1LA6NDD5 238 aa13.59□□□□□ -0.23
LDLR-201ENST00000252444 DCLK1O15075 740 aa13.59□□□□□ -0.23
LDLR-201ENST00000252444 SPTLC1O15269 473 aa13.59□□□□□ -0.23
LDLR-201ENST00000252444 RECQL5O94762 991 aaPredicted RBP13.59□□□□□ -0.23
LDLR-201ENST00000252444 CDK14O94921 469 aa13.59□□□□□ -0.23
LDLR-201ENST00000252444 HLA-DQB2P05538 268 aa13.59□□□□□ -0.23
LDLR-201ENST00000252444 SUZ12Q15022 739 aaKnown RBP13.59□□□□□ -0.23
LDLR-201ENST00000252444 CNGA3Q16281 694 aa13.59□□□□□ -0.23
LDLR-201ENST00000252444 ZNF544Q6NX49 715 aa13.59□□□□□ -0.23
LDLR-201ENST00000252444 TTC27Q6P3X3 843 aa13.59□□□□□ -0.23
LDLR-201ENST00000252444 IL27RAQ6UWB1 636 aa13.59□□□□□ -0.23
LDLR-201ENST00000252444 SERPINA9Q86WD7 417 aa13.59□□□□□ -0.23
LDLR-201ENST00000252444 TERB1Q8NA31 727 aa13.59□□□□□ -0.23
LDLR-201ENST00000252444 MDM1Q8TC05 714 aa13.59□□□□□ -0.23
LDLR-201ENST00000252444 ING5Q8WYH8 240 aa13.59□□□□□ -0.23
LDLR-201ENST00000252444 SLC29A3Q9BZD2 475 aa13.59□□□□□ -0.23
LDLR-201ENST00000252444 CDH7Q9ULB5 785 aa13.59□□□□□ -0.23
LDLR-201ENST00000252444 FKBP9O95302 570 aa13.58□□□□□ -0.23
LDLR-201ENST00000252444 VIPP01282 170 aa13.58□□□□□ -0.23
LDLR-201ENST00000252444 PRPS2P11908 318 aa13.58□□□□□ -0.23
LDLR-201ENST00000252444 FBXW4P57775 412 aa13.58□□□□□ -0.23
LDLR-201ENST00000252444 CA9Q16790 459 aa13.58□□□□□ -0.23
LDLR-201ENST00000252444 FAM98BQ52LJ0 330 aaKnown RBP13.58□□□□□ -0.23
LDLR-201ENST00000252444 CAPRIN2Q6IMN6 1127 aaKnown RBP13.58□□□□□ -0.23
LDLR-201ENST00000252444 ERICH5Q6P6B1 374 aa13.58□□□□□ -0.23
LDLR-201ENST00000252444 TSEN2Q8NCE0 465 aaKnown RBP13.58□□□□□ -0.23
LDLR-201ENST00000252444 MCOLN1Q9GZU1 580 aa13.58□□□□□ -0.23
LDLR-201ENST00000252444 HAPLN2Q9GZV7 340 aa13.58□□□□□ -0.23
LDLR-201ENST00000252444 GUCA1CO95843 209 aa13.58□□□□□ -0.24
LDLR-201ENST00000252444 GOT2P00505 430 aaKnown RBP13.58□□□□□ -0.24
LDLR-201ENST00000252444 IL1R2P27930 398 aa13.58□□□□□ -0.24
LDLR-201ENST00000252444 DDX39BQ13838 428 aaKnown RBP13.58□□□□□ -0.24
LDLR-201ENST00000252444 SMAD1Q15797 465 aaKnown RBP13.58□□□□□ -0.24
LDLR-201ENST00000252444 PRR23BQ6ZRT6 265 aa13.58□□□□□ -0.24
LDLR-201ENST00000252444 OR14C36Q8NHC7 312 aa13.58□□□□□ -0.24
LDLR-201ENST00000252444 KCTD14Q9BQ13 255 aaPredicted RBP13.58□□□□□ -0.24
LDLR-201ENST00000252444 NEUROG2Q9H2A3 272 aa13.58□□□□□ -0.24
LDLR-201ENST00000252444 CCDC177Q9NQR7 707 aaPredicted RBP13.58□□□□□ -0.24
LDLR-201ENST00000252444 SEMA3GQ9NS98 782 aa13.58□□□□□ -0.24
LDLR-201ENST00000252444 KLC4Q9NSK0 619 aa13.58□□□□□ -0.24
LDLR-201ENST00000252444 GRHL1Q9NZI5 618 aa13.58□□□□□ -0.24
LDLR-201ENST00000252444 FCF1Q9Y324 198 aaKnown RBP13.58□□□□□ -0.24
LDLR-201ENST00000252444 FAM159BA6NKW6 160 aa13.58□□□□□ -0.24
LDLR-201ENST00000252444 OR5K4A6NMS3 321 aa13.58□□□□□ -0.24
LDLR-201ENST00000252444 PFKFB4Q16877 469 aa13.58□□□□□ -0.24
LDLR-201ENST00000252444 PLEKHG6Q3KR16 790 aa13.58□□□□□ -0.24
LDLR-201ENST00000252444 HTR3DQ70Z44 454 aa13.58□□□□□ -0.24
LDLR-201ENST00000252444 PYROXD2Q8N2H3 581 aa13.58□□□□□ -0.24
LDLR-201ENST00000252444 NAT16Q8N8M0 369 aa13.58□□□□□ -0.24
LDLR-201ENST00000252444 USP7Q93009 1102 aa13.58□□□□□ -0.24
LDLR-201ENST00000252444 RMI1Q9H9A7 625 aa13.58□□□□□ -0.24
LDLR-201ENST00000252444 VPS4AQ9UN37 437 aa13.58□□□□□ -0.24
LDLR-201ENST00000252444 ASF1AQ9Y294 204 aa13.58□□□□□ -0.24
LDLR-201ENST00000252444 MYH9P35579 1960 aaKnown RBP13.58□□□□□ -0.24
LDLR-201ENST00000252444 ACADSP16219 412 aa13.58□□□□□ -0.24
LDLR-201ENST00000252444 DRD1P21728 446 aa13.58□□□□□ -0.24
LDLR-201ENST00000252444 AP5B1Q2VPB7 878 aa13.58□□□□□ -0.24
LDLR-201ENST00000252444 SPATS1Q496A3 300 aa13.58□□□□□ -0.24
LDLR-201ENST00000252444 PLEKHS1Q5SXH7 462 aa13.58□□□□□ -0.24
LDLR-201ENST00000252444 GRASPQ7Z6J2 395 aaPredicted RBP13.58□□□□□ -0.24
LDLR-201ENST00000252444 HDDC3Q8N4P3 179 aa13.58□□□□□ -0.24
LDLR-201ENST00000252444 ITCHQ96J02 903 aa13.58□□□□□ -0.24
LDLR-201ENST00000252444 WDR26Q9H7D7 661 aa13.58□□□□□ -0.24
LDLR-201ENST00000252444 USP3Q9Y6I4 520 aa13.58□□□□□ -0.24
LDLR-201ENST00000252444 NR5A2O00482 541 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 PHGDHO43175 533 aaKnown RBP13.57□□□□□ -0.24
LDLR-201ENST00000252444 STK16O75716 305 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 TNFP01375 233 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 MPC1LP0DKB6 136 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 UROSP10746 265 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 COX7A2P14406 83 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 NQO1P15559 274 aaKnown RBP13.57□□□□□ -0.24
LDLR-201ENST00000252444 STXBP1P61764 594 aaKnown RBP13.57□□□□□ -0.24
LDLR-201ENST00000252444 TAF5Q15542 800 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 ALG11Q2TAA5 492 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 AGKQ53H12 422 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 TMC5Q6UXY8 1006 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 NDRG1Q92597 394 aaKnown RBP13.57□□□□□ -0.24
LDLR-201ENST00000252444 PHF21BQ96EK2 531 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 PLEKHA8Q96JA3 519 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 THTPAQ9BU02 230 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 RHOBTB2Q9BYZ6 727 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 NKX2-4Q9H2Z4 354 aa13.57□□□□□ -0.24
LDLR-201ENST00000252444 THUMPD1Q9NXG2 353 aaKnown RBP13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 157 ms