RNA–Protein interactions for RNA: ENST00000629293.1

LINC00550-201, long intergenic non-protein coding RNA 550, humanhuman

TSL 1 (best) BASIC

Gene LINC00550, Length 3,434 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00550-201ENST00000629293 PPP2CBP62714 309 aa4.9□□□□□ -1.63
LINC00550-201ENST00000629293 PPP2CAP67775 309 aa4.9□□□□□ -1.63
LINC00550-201ENST00000629293 MESDQ14696 234 aa4.9□□□□□ -1.63
LINC00550-201ENST00000629293 SMAD1Q15797 465 aaKnown RBP4.9□□□□□ -1.63
LINC00550-201ENST00000629293 KCTD19Q17RG1 926 aaPredicted RBP4.9□□□□□ -1.63
LINC00550-201ENST00000629293 FSCBQ5H9T9 825 aa4.9□□□□□ -1.63
LINC00550-201ENST00000629293 SEL1L2Q5TEA6 688 aa4.9□□□□□ -1.63
LINC00550-201ENST00000629293 PIK3R6Q5UE93 754 aa4.9□□□□□ -1.63
LINC00550-201ENST00000629293 RAP1GAP2Q684P5 730 aa4.9□□□□□ -1.63
LINC00550-201ENST00000629293 CRTC1Q6UUV9 634 aa4.9□□□□□ -1.63
LINC00550-201ENST00000629293 PASD1Q8IV76 773 aa4.9□□□□□ -1.63
LINC00550-201ENST00000629293 C10orf67Q8IYJ2 551 aa4.9□□□□□ -1.63
LINC00550-201ENST00000629293 LGI2Q8N0V4 545 aa4.9□□□□□ -1.63
LINC00550-201ENST00000629293 NXPE1Q8N323 547 aa4.9□□□□□ -1.63
LINC00550-201ENST00000629293 CPXM2Q8N436 756 aa4.9□□□□□ -1.63
LINC00550-201ENST00000629293 UBLCP1Q8WVY7 318 aaPredicted RBP4.9□□□□□ -1.63
LINC00550-201ENST00000629293 MYEOVQ96EZ4 313 aa4.9□□□□□ -1.63
LINC00550-201ENST00000629293 FAM81BQ96LP2 452 aa4.9□□□□□ -1.63
LINC00550-201ENST00000629293 TMEM109Q9BVC6 243 aa4.9□□□□□ -1.63
LINC00550-201ENST00000629293 SLC2A11Q9BYW1 496 aa4.9□□□□□ -1.63
LINC00550-201ENST00000629293 ABCG4Q9H172 646 aa4.9□□□□□ -1.63
LINC00550-201ENST00000629293 CDIP1Q9H305 208 aa4.9□□□□□ -1.63
LINC00550-201ENST00000629293 TMEM245Q9H330 911 aa4.9□□□□□ -1.63
LINC00550-201ENST00000629293 PABPC3Q9H361 631 aaKnown RBP4.9□□□□□ -1.63
LINC00550-201ENST00000629293 FZD3Q9NPG1 666 aa4.9□□□□□ -1.63
LINC00550-201ENST00000629293 ABCC13Q9NSE7 274 aa4.9□□□□□ -1.63
LINC00550-201ENST00000629293 CNOT8Q9UFF9 292 aaKnown RBP4.9□□□□□ -1.63
LINC00550-201ENST00000629293 FAM169AQ9Y6X4 670 aa4.9□□□□□ -1.63
LINC00550-201ENST00000629293 KIAA1549LQ6ZVL6 1849 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 KIF26BQ2KJY2 2108 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 A0A1B0GTQ1 180 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 C5orf60A6NFR6 353 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 NDUFAB1O14561 156 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 TP73O15350 636 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 ACSL4O60488 711 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 FAM107AO95990 144 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 LTFP02788 710 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 CYP1A1P04798 512 aaPredicted RBP4.89□□□□□ -1.63
LINC00550-201ENST00000629293 PDGFRAP16234 1089 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 GLDCP23378 1020 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 COILP38432 576 aaPredicted RBP4.89□□□□□ -1.63
LINC00550-201ENST00000629293 USP8P40818 1118 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 CUL2Q13617 745 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 HNRNPA1L2Q32P51 320 aaKnown RBP4.89□□□□□ -1.63
LINC00550-201ENST00000629293 TNFAIP8L3Q5GJ75 292 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 PMF1Q6P1K2 205 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 NLRP14Q86W24 1093 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 TMPRSS12Q86WS5 348 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 ZNF677Q86XU0 584 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 ADCY4Q8NFM4 1077 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 FBXO25Q8TCJ0 367 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 ZNF473Q8WTR7 871 aaKnown RBP4.89□□□□□ -1.63
LINC00550-201ENST00000629293 BTBD6Q96KE9 485 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 LRRC19Q9H756 370 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 CNTN6Q9UQ52 1028 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 ZNF281Q9Y2X9 895 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 HBS1LQ9Y450 684 aaKnown RBP4.89□□□□□ -1.63
LINC00550-201ENST00000629293 SPEF1Q9Y4P9 236 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 COMMD10Q9Y6G5 202 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 PTPRBP23467 1997 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 TNRC6BQ9UPQ9 1833 aaKnown RBP4.89□□□□□ -1.63
LINC00550-201ENST00000629293 USP9YO00507 2555 aaPredicted RBP4.89□□□□□ -1.63
LINC00550-201ENST00000629293 A0A087WUV0 522 aaPredicted RBP4.89□□□□□ -1.63
LINC00550-201ENST00000629293 TMEM110-MUSTN1A8MSY1 372 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 M0R082 166 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 TLR4O00206 839 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 KPNA3O00505 521 aaPredicted RBP4.89□□□□□ -1.63
LINC00550-201ENST00000629293 XPO1O14980 1071 aaKnown RBP4.89□□□□□ -1.63
LINC00550-201ENST00000629293 NEBLO76041 1014 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 KRT5P13647 590 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 LPOP22079 712 aaPredicted RBP4.89□□□□□ -1.63
LINC00550-201ENST00000629293 PMS2P54278 862 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 ZBTB16Q05516 673 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 PTP4A2Q12974 167 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 ENPP2Q13822 863 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 LY6DQ14210 128 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 NUGGCQ68CJ6 796 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 CCDC137Q6PK04 289 aaKnown RBP4.89□□□□□ -1.63
LINC00550-201ENST00000629293 C6orf89Q6UWU4 347 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 B4GALNT4Q76KP1 1039 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 YTHDF3Q7Z739 585 aaKnown RBP4.89□□□□□ -1.63
LINC00550-201ENST00000629293 UNC45BQ8IWX7 931 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 MCOLN2Q8IZK6 566 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 APCDD1Q8J025 514 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 HJURPQ8NCD3 748 aaPredicted RBP4.89□□□□□ -1.63
LINC00550-201ENST00000629293 OR2T34Q8NGX1 318 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 ZNF417Q8TAU3 575 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 TFAP2BQ92481 460 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 FGF11Q92914 225 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 ART4Q93070 314 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 MAGOHBQ96A72 148 aaKnown RBP4.89□□□□□ -1.63
LINC00550-201ENST00000629293 PGM2Q96G03 612 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 UBL7Q96S82 380 aaPredicted RBP4.89□□□□□ -1.63
LINC00550-201ENST00000629293 ZNF587Q96SQ5 575 aaPredicted RBP4.89□□□□□ -1.63
LINC00550-201ENST00000629293 CPNE5Q9HCH3 593 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 INTS6Q9UL03 887 aaKnown RBP4.89□□□□□ -1.63
LINC00550-201ENST00000629293 CLCA2Q9UQC9 943 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 NAALADL1Q9UQQ1 740 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 SNX24Q9Y343 169 aa4.89□□□□□ -1.63
LINC00550-201ENST00000629293 PCDHB1Q9Y5F3 818 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms