RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 SEPT6Q14141 434 aa18.01■□□□□ 0.47
CLN3-239ENST00000628023 NFATC4Q14934 902 aa18.01■□□□□ 0.47
CLN3-239ENST00000628023 KCTD19Q17RG1 926 aaPredicted RBP18.01■□□□□ 0.47
CLN3-239ENST00000628023 INAVAQ3KP66 663 aa18.01■□□□□ 0.47
CLN3-239ENST00000628023 MACC1Q6ZN28 852 aa18.01■□□□□ 0.47
CLN3-239ENST00000628023 DBX2Q6ZNG2 339 aa18.01■□□□□ 0.47
CLN3-239ENST00000628023 HEATR4Q86WZ0 1026 aa18.01■□□□□ 0.47
CLN3-239ENST00000628023 RUNDC3BQ96NL0 473 aa18.01■□□□□ 0.47
CLN3-239ENST00000628023 FAM83DQ9H4H8 585 aa18.01■□□□□ 0.47
CLN3-239ENST00000628023 PHPT1Q9NRX4 125 aaPredicted RBP18.01■□□□□ 0.47
CLN3-239ENST00000628023 GPR27Q9NS67 375 aa18.01■□□□□ 0.47
CLN3-239ENST00000628023 DNAJC28Q9NX36 388 aa18.01■□□□□ 0.47
CLN3-239ENST00000628023 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP18.01■□□□□ 0.47
CLN3-239ENST00000628023 SPTY2D1-AS1A0A0U1RR47 76 aa18■□□□□ 0.47
CLN3-239ENST00000628023 A0A1B0GTQ1 180 aa18■□□□□ 0.47
CLN3-239ENST00000628023 C2orf81A6NN90 581 aa18■□□□□ 0.47
CLN3-239ENST00000628023 CCDC188H7C350 402 aa18■□□□□ 0.47
CLN3-239ENST00000628023 KIF2AO00139 706 aaPredicted RBP18■□□□□ 0.47
CLN3-239ENST00000628023 YKT6O15498 198 aa18■□□□□ 0.47
CLN3-239ENST00000628023 CRTAMO95727 393 aa18■□□□□ 0.47
CLN3-239ENST00000628023 KELP23276 732 aa18■□□□□ 0.47
CLN3-239ENST00000628023 HMGCLP35914 325 aa18■□□□□ 0.47
CLN3-239ENST00000628023 GRK6P43250 576 aa18■□□□□ 0.47
CLN3-239ENST00000628023 CDH17Q12864 832 aa18■□□□□ 0.47
CLN3-239ENST00000628023 FZD2Q14332 565 aa18■□□□□ 0.47
CLN3-239ENST00000628023 TAF1AQ15573 450 aaPredicted RBP18■□□□□ 0.47
CLN3-239ENST00000628023 TPRG1LQ5T0D9 272 aa18■□□□□ 0.47
CLN3-239ENST00000628023 TTC30BQ8N4P2 665 aa18■□□□□ 0.47
CLN3-239ENST00000628023 OR52K1Q8NGK4 314 aa18■□□□□ 0.47
CLN3-239ENST00000628023 FUBP1Q96AE4 644 aaKnown RBP18■□□□□ 0.47
CLN3-239ENST00000628023 EID2BQ96D98 161 aa18■□□□□ 0.47
CLN3-239ENST00000628023 SPATA16Q9BXB7 569 aa18■□□□□ 0.47
CLN3-239ENST00000628023 CDH19Q9H159 772 aa18■□□□□ 0.47
CLN3-239ENST00000628023 ARNT2Q9HBZ2 717 aa18■□□□□ 0.47
CLN3-239ENST00000628023 BPIFA1Q9NP55 256 aa18■□□□□ 0.47
CLN3-239ENST00000628023 EIF2B3Q9NR50 452 aaKnown RBP18■□□□□ 0.47
CLN3-239ENST00000628023 PIH1D1Q9NWS0 290 aaKnown RBP18■□□□□ 0.47
CLN3-239ENST00000628023 ARL5AQ9Y689 179 aa18■□□□□ 0.47
CLN3-239ENST00000628023 TMEM131Q92545 1883 aa17.99■□□□□ 0.47
CLN3-239ENST00000628023 H3BM21 787 aa17.99■□□□□ 0.47
CLN3-239ENST00000628023 PDE2AO00408 941 aaPredicted RBP17.99■□□□□ 0.47
CLN3-239ENST00000628023 STX7O15400 261 aaKnown RBP17.99■□□□□ 0.47
CLN3-239ENST00000628023 BUD23O43709 281 aaKnown RBP17.99■□□□□ 0.47
CLN3-239ENST00000628023 MYCLP1P12525 358 aaPredicted RBP17.99■□□□□ 0.47
CLN3-239ENST00000628023 TPH1P17752 444 aa17.99■□□□□ 0.47
CLN3-239ENST00000628023 LPOP22079 712 aaPredicted RBP17.99■□□□□ 0.47
CLN3-239ENST00000628023 KIAA1024LP59773 190 aa17.99■□□□□ 0.47
CLN3-239ENST00000628023 DCDC1P59894 354 aa17.99■□□□□ 0.47
CLN3-239ENST00000628023 CDK3Q00526 305 aa17.99■□□□□ 0.47
CLN3-239ENST00000628023 PDE1BQ01064 536 aa17.99■□□□□ 0.47
CLN3-239ENST00000628023 ZNF542PQ5EBM4 170 aa17.99■□□□□ 0.47
CLN3-239ENST00000628023 DENND5AQ6IQ26 1287 aa17.99■□□□□ 0.47
CLN3-239ENST00000628023 ENPP7Q6UWV6 458 aa17.99■□□□□ 0.47
CLN3-239ENST00000628023 SLCO6A1Q86UG4 719 aa17.99■□□□□ 0.47
CLN3-239ENST00000628023 PELI3Q8N2H9 469 aa17.99■□□□□ 0.47
CLN3-239ENST00000628023 BRSK1Q8TDC3 778 aa17.99■□□□□ 0.47
CLN3-239ENST00000628023 WDR92Q96MX6 357 aa17.99■□□□□ 0.47
CLN3-239ENST00000628023 KLQ9UEF7 1012 aa17.99■□□□□ 0.47
CLN3-239ENST00000628023 ASIC3Q9UHC3 531 aa17.99■□□□□ 0.47
CLN3-239ENST00000628023 MOSPD1Q9UJG1 213 aa17.99■□□□□ 0.47
CLN3-239ENST00000628023 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP17.98■□□□□ 0.47
CLN3-239ENST00000628023 INPP4BO15327 924 aa17.98■□□□□ 0.47
CLN3-239ENST00000628023 PCDHGA12O60330 932 aa17.98■□□□□ 0.47
CLN3-239ENST00000628023 SDC3O75056 442 aa17.98■□□□□ 0.47
CLN3-239ENST00000628023 URI1O94763 535 aaPredicted RBP17.98■□□□□ 0.47
CLN3-239ENST00000628023 SUN1O94901 812 aa17.98■□□□□ 0.47
CLN3-239ENST00000628023 TUBB4AP04350 444 aa17.98■□□□□ 0.47
CLN3-239ENST00000628023 BPIP17213 487 aa17.98■□□□□ 0.47
CLN3-239ENST00000628023 JUNDP17535 347 aa17.98■□□□□ 0.47
CLN3-239ENST00000628023 TEAD1P28347 426 aa17.98■□□□□ 0.47
CLN3-239ENST00000628023 TRIM23P36406 574 aa17.98■□□□□ 0.47
CLN3-239ENST00000628023 SPAM1P38567 509 aa17.98■□□□□ 0.47
CLN3-239ENST00000628023 POU6F1Q14863 301 aa17.98■□□□□ 0.47
CLN3-239ENST00000628023 HENMT1Q5T8I9 393 aaKnown RBP17.98■□□□□ 0.47
CLN3-239ENST00000628023 ZDHHC20Q5W0Z9 365 aa17.98■□□□□ 0.47
CLN3-239ENST00000628023 ADAMTSL4Q6UY14 1074 aa17.98■□□□□ 0.47
CLN3-239ENST00000628023 CCNI2Q6ZMN8 369 aaPredicted RBP17.98■□□□□ 0.47
CLN3-239ENST00000628023 NLRP8Q86W28 1048 aa17.98■□□□□ 0.47
CLN3-239ENST00000628023 GPR26Q8NDV2 337 aa17.98■□□□□ 0.47
CLN3-239ENST00000628023 PLEKHG4BQ96PX9 1271 aa17.98■□□□□ 0.47
CLN3-239ENST00000628023 AGAP2Q99490 1192 aa17.98■□□□□ 0.47
CLN3-239ENST00000628023 ZSCAN5AQ9BUG6 496 aa17.98■□□□□ 0.47
CLN3-239ENST00000628023 PCYOX1Q9UHG3 505 aa17.98■□□□□ 0.47
CLN3-239ENST00000628023 ZZEF1O43149 2961 aa17.97■□□□□ 0.47
CLN3-239ENST00000628023 TNFSF14O43557 240 aa17.97■□□□□ 0.47
CLN3-239ENST00000628023 PPFIA2O75334 1257 aa17.97■□□□□ 0.47
CLN3-239ENST00000628023 HOXC4P09017 264 aaPredicted RBP17.97■□□□□ 0.47
CLN3-239ENST00000628023 NME1P15531 152 aaKnown RBP17.97■□□□□ 0.47
CLN3-239ENST00000628023 TPSB2P20231 275 aa17.97■□□□□ 0.47
CLN3-239ENST00000628023 EPHA8P29322 1005 aaPredicted RBP17.97■□□□□ 0.47
CLN3-239ENST00000628023 RXRGP48443 463 aa17.97■□□□□ 0.47
CLN3-239ENST00000628023 HNRNPKP61978 463 aaKnown RBP eCLIP17.97■□□□□ 0.47
CLN3-239ENST00000628023 SARNPP82979 210 aaKnown RBP17.97■□□□□ 0.47
CLN3-239ENST00000628023 DR1Q01658 176 aa17.97■□□□□ 0.47
CLN3-239ENST00000628023 PPARDQ03181 441 aa17.97■□□□□ 0.47
CLN3-239ENST00000628023 CKAP4Q07065 602 aaKnown RBP17.97■□□□□ 0.47
CLN3-239ENST00000628023 EIF2B5Q13144 721 aaKnown RBP17.97■□□□□ 0.47
CLN3-239ENST00000628023 TPSAB1Q15661 275 aa17.97■□□□□ 0.47
CLN3-239ENST00000628023 DOK6Q6PKX4 331 aa17.97■□□□□ 0.47
CLN3-239ENST00000628023 RD3Q7Z3Z2 195 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms