RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 SAP25Q8TEE9 199 aa20.19■□□□□ 0.82
PTCD3-220ENST00000627371 C19orf43Q9BQ61 176 aa20.19■□□□□ 0.82
PTCD3-220ENST00000627371 RTKNQ9BST9 563 aa20.19■□□□□ 0.82
PTCD3-220ENST00000627371 SPATA16Q9BXB7 569 aa20.19■□□□□ 0.82
PTCD3-220ENST00000627371 CASS4Q9NQ75 786 aa20.19■□□□□ 0.82
PTCD3-220ENST00000627371 PIH1D1Q9NWS0 290 aaKnown RBP20.19■□□□□ 0.82
PTCD3-220ENST00000627371 DLL3Q9NYJ7 618 aa20.19■□□□□ 0.82
PTCD3-220ENST00000627371 KLQ9UEF7 1012 aa20.19■□□□□ 0.82
PTCD3-220ENST00000627371 KLF15Q9UIH9 416 aa20.19■□□□□ 0.82
PTCD3-220ENST00000627371 BPTFQ12830 3046 aa20.19■□□□□ 0.82
PTCD3-220ENST00000627371 ZFC3H1O60293 1989 aaKnown RBP20.19■□□□□ 0.82
PTCD3-220ENST00000627371 COL5A1P20908 1838 aaPredicted RBP20.18■□□□□ 0.82
PTCD3-220ENST00000627371 TMEM202A6NGA9 273 aa20.18■□□□□ 0.82
PTCD3-220ENST00000627371 TNFRSF10CO14798 259 aa20.18■□□□□ 0.82
PTCD3-220ENST00000627371 STX7O15400 261 aaKnown RBP20.18■□□□□ 0.82
PTCD3-220ENST00000627371 FLRT2O43155 660 aa20.18■□□□□ 0.82
PTCD3-220ENST00000627371 BUD23O43709 281 aaKnown RBP20.18■□□□□ 0.82
PTCD3-220ENST00000627371 PIAS2O75928 621 aa20.18■□□□□ 0.82
PTCD3-220ENST00000627371 JUNDP17535 347 aa20.18■□□□□ 0.82
PTCD3-220ENST00000627371 TPH1P17752 444 aa20.18■□□□□ 0.82
PTCD3-220ENST00000627371 SPAM1P38567 509 aa20.18■□□□□ 0.82
PTCD3-220ENST00000627371 GRIA1P42261 906 aa20.18■□□□□ 0.82
PTCD3-220ENST00000627371 MAGEA6P43360 314 aa20.18■□□□□ 0.82
PTCD3-220ENST00000627371 ZNF140P52738 457 aaPredicted RBP20.18■□□□□ 0.82
PTCD3-220ENST00000627371 CDK16Q00536 496 aa20.18■□□□□ 0.82
PTCD3-220ENST00000627371 PPARDQ03181 441 aa20.18■□□□□ 0.82
PTCD3-220ENST00000627371 BNIP3Q12983 259 aa20.18■□□□□ 0.82
PTCD3-220ENST00000627371 PPP1R7Q15435 360 aa20.18■□□□□ 0.82
PTCD3-220ENST00000627371 ALG11Q2TAA5 492 aa20.18■□□□□ 0.82
PTCD3-220ENST00000627371 KANSL1Q7Z3B3 1105 aa20.18■□□□□ 0.82
PTCD3-220ENST00000627371 KLHL7Q8IXQ5 586 aa20.18■□□□□ 0.82
PTCD3-220ENST00000627371 PHACTR4Q8IZ21 702 aa20.18■□□□□ 0.82
PTCD3-220ENST00000627371 DTX3LQ8TDB6 740 aa20.18■□□□□ 0.82
PTCD3-220ENST00000627371 BTN2A2Q8WVV5 523 aa20.18■□□□□ 0.82
PTCD3-220ENST00000627371 COX14Q96I36 57 aa20.18■□□□□ 0.82
PTCD3-220ENST00000627371 HIC2Q96JB3 615 aa20.18■□□□□ 0.82
PTCD3-220ENST00000627371 FGF22Q9HCT0 170 aa20.18■□□□□ 0.82
PTCD3-220ENST00000627371 KIF2AO00139 706 aaPredicted RBP20.17■□□□□ 0.82
PTCD3-220ENST00000627371 LDB2O43679 373 aa20.17■□□□□ 0.82
PTCD3-220ENST00000627371 SDC3O75056 442 aa20.17■□□□□ 0.82
PTCD3-220ENST00000627371 BLKP51451 505 aa20.17■□□□□ 0.82
PTCD3-220ENST00000627371 HK3P52790 923 aa20.17■□□□□ 0.82
PTCD3-220ENST00000627371 SRP54P61011 504 aaKnown RBP20.17■□□□□ 0.82
PTCD3-220ENST00000627371 KCNJ11Q14654 390 aa20.17■□□□□ 0.82
PTCD3-220ENST00000627371 PTPRCAPQ14761 206 aa20.17■□□□□ 0.82
PTCD3-220ENST00000627371 POU6F1Q14863 301 aa20.17■□□□□ 0.82
PTCD3-220ENST00000627371 PIP4P1Q86T03 277 aa20.17■□□□□ 0.82
PTCD3-220ENST00000627371 GATAD2AQ86YP4 633 aa20.17■□□□□ 0.82
PTCD3-220ENST00000627371 NAXDQ8IW45 347 aa20.17■□□□□ 0.82
PTCD3-220ENST00000627371 OR4K2Q8NGD2 314 aa20.17■□□□□ 0.82
PTCD3-220ENST00000627371 TSACCQ96A04 125 aaPredicted RBP20.17■□□□□ 0.82
PTCD3-220ENST00000627371 PDXPQ96GD0 296 aa20.17■□□□□ 0.82
PTCD3-220ENST00000627371 TBATAQ96M53 351 aa20.17■□□□□ 0.82
PTCD3-220ENST00000627371 FRMD8Q9BZ67 464 aaPredicted RBP20.17■□□□□ 0.82
PTCD3-220ENST00000627371 CAAP1Q9H8G2 361 aa20.17■□□□□ 0.82
PTCD3-220ENST00000627371 IL26Q9NPH9 171 aa20.17■□□□□ 0.82
PTCD3-220ENST00000627371 APOBEC3BQ9UH17 382 aaKnown RBP20.17■□□□□ 0.82
PTCD3-220ENST00000627371 CNOT6Q9ULM6 557 aaKnown RBP20.17■□□□□ 0.82
PTCD3-220ENST00000627371 KCTD3Q9Y597 815 aa20.17■□□□□ 0.82
PTCD3-220ENST00000627371 DGKBQ9Y6T7 804 aa20.17■□□□□ 0.82
PTCD3-220ENST00000627371 CNOT1A5YKK6 2376 aaKnown RBP20.17■□□□□ 0.82
PTCD3-220ENST00000627371 INPP4BO15327 924 aa20.16■□□□□ 0.82
PTCD3-220ENST00000627371 RASGRP1O95267 797 aa20.16■□□□□ 0.82
PTCD3-220ENST00000627371 DGKAP23743 735 aa20.16■□□□□ 0.82
PTCD3-220ENST00000627371 PTGIRP43119 386 aa20.16■□□□□ 0.82
PTCD3-220ENST00000627371 PTK6Q13882 451 aa20.16■□□□□ 0.82
PTCD3-220ENST00000627371 INAVAQ3KP66 663 aa20.16■□□□□ 0.82
PTCD3-220ENST00000627371 KCTD16Q68DU8 428 aa20.16■□□□□ 0.82
PTCD3-220ENST00000627371 RBFAQ8N0V3 343 aa20.16■□□□□ 0.82
PTCD3-220ENST00000627371 OR1E3Q8WZA6 343 aa20.16■□□□□ 0.82
PTCD3-220ENST00000627371 CPT1BQ92523 772 aa20.16■□□□□ 0.82
PTCD3-220ENST00000627371 SLC13A1Q9BZW2 595 aa20.16■□□□□ 0.82
PTCD3-220ENST00000627371 TCEAL2Q9H3H9 227 aaPredicted RBP20.16■□□□□ 0.82
PTCD3-220ENST00000627371 SLC17A4Q9Y2C5 497 aa20.16■□□□□ 0.82
PTCD3-220ENST00000627371 GLYATL1P3A0A0U1RQE8 302 aa20.15■□□□□ 0.82
PTCD3-220ENST00000627371 TCRBV7S3A2A0A539 114 aa20.15■□□□□ 0.82
PTCD3-220ENST00000627371 PRSS38A1L453 326 aa20.15■□□□□ 0.82
PTCD3-220ENST00000627371 AP3B1O00203 1094 aa20.15■□□□□ 0.82
PTCD3-220ENST00000627371 GAPDHSO14556 408 aaPredicted RBP20.15■□□□□ 0.82
PTCD3-220ENST00000627371 SH3BP5O60239 455 aa20.15■□□□□ 0.82
PTCD3-220ENST00000627371 CEACAM5P06731 702 aa20.15■□□□□ 0.82
PTCD3-220ENST00000627371 HADHAP40939 763 aa20.15■□□□□ 0.82
PTCD3-220ENST00000627371 GRK6P43250 576 aa20.15■□□□□ 0.82
PTCD3-220ENST00000627371 DR1Q01658 176 aa20.15■□□□□ 0.82
PTCD3-220ENST00000627371 SEPT6Q14141 434 aa20.15■□□□□ 0.82
PTCD3-220ENST00000627371 CERCAMQ5T4B2 595 aa20.15■□□□□ 0.82
PTCD3-220ENST00000627371 FAM151BQ6UXP7 276 aa20.15■□□□□ 0.82
PTCD3-220ENST00000627371 SYDE1Q6ZW31 735 aaPredicted RBP20.15■□□□□ 0.82
PTCD3-220ENST00000627371 ZNF534Q76KX8 674 aa20.15■□□□□ 0.82
PTCD3-220ENST00000627371 TRIM74Q86UV6 250 aa20.15■□□□□ 0.82
PTCD3-220ENST00000627371 HID1Q8IV36 788 aa20.15■□□□□ 0.82
PTCD3-220ENST00000627371 ZNF548Q8NEK5 533 aaPredicted RBP20.15■□□□□ 0.82
PTCD3-220ENST00000627371 SPATA4Q8NEY3 305 aa20.15■□□□□ 0.82
PTCD3-220ENST00000627371 OR13C4Q8NGS5 318 aa20.15■□□□□ 0.82
PTCD3-220ENST00000627371 GLYATL1Q969I3 302 aa20.15■□□□□ 0.82
PTCD3-220ENST00000627371 VPS35Q96QK1 796 aa20.15■□□□□ 0.82
PTCD3-220ENST00000627371 RANBP9Q96S59 729 aa20.15■□□□□ 0.82
PTCD3-220ENST00000627371 LRRC61Q9BV99 259 aa20.15■□□□□ 0.82
PTCD3-220ENST00000627371 MRPL40Q9NQ50 206 aaKnown RBP20.15■□□□□ 0.82
PTCD3-220ENST00000627371 UCKL1Q9NWZ5 548 aa20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms