RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 PPP1R35Q8TAP8 253 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 DENND1AQ8TEH3 1009 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 SNX19Q92543 992 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 USP13Q92995 863 aaPredicted RBP4.56□□□□□ -1.68
LINC00540-201ENST00000611481 IGSF8Q969P0 613 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 TBC1D20Q96BZ9 403 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 CPB2Q96IY4 423 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 WACQ9BTA9 647 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 TRIM6Q9C030 488 aaPredicted RBP4.56□□□□□ -1.68
LINC00540-201ENST00000611481 C11orf54Q9H0W9 315 aaPredicted RBP4.56□□□□□ -1.68
LINC00540-201ENST00000611481 ADNPQ9H2P0 1102 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 MINDY3Q9H8M7 445 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 ZNF71Q9NQZ8 489 aaPredicted RBP4.56□□□□□ -1.68
LINC00540-201ENST00000611481 KLC4Q9NSK0 619 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 NRBP2Q9NSY0 501 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 DUS2Q9NX74 493 aaKnown RBP4.56□□□□□ -1.68
LINC00540-201ENST00000611481 CTTNBP2NLQ9P2B4 639 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 AFF4Q9UHB7 1163 aaKnown RBP4.56□□□□□ -1.68
LINC00540-201ENST00000611481 VPS4AQ9UN37 437 aa4.56□□□□□ -1.68
LINC00540-201ENST00000611481 FBN1P35555 2871 aaKnown RBP4.56□□□□□ -1.68
LINC00540-201ENST00000611481 A0A1W2PRQ8 180 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 BICDL2A1A5D9 508 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 LAD1O00515 517 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 CSO75390 466 aaKnown RBP4.55□□□□□ -1.68
LINC00540-201ENST00000611481 FAM155BO75949 473 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 UBXN7O94888 489 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 ERLIN2O94905 339 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 CAPN3P20807 821 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 ABCB4P21439 1286 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 AGXTP21549 392 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 PEX2P28328 305 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 SMARCA1P28370 1054 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 EPHB2P29323 1055 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 CD6P30203 668 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 AVPR1AP37288 418 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 TNFSF9P41273 254 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 PIK3CBP42338 1070 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 WASP42768 502 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 DUSP3P51452 185 aaPredicted RBP4.55□□□□□ -1.68
LINC00540-201ENST00000611481 MPP1Q00013 466 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 PRKCEQ02156 737 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 PLD1Q13393 1074 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 BLMHQ13867 455 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 MTF1Q14872 753 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 UBE2SQ16763 222 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 CTXN3Q4LDR2 81 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 VPS53Q5VIR6 699 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 FAM180BQ6P0A1 224 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 PGBD2Q6P3X8 592 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 KIAA1324Q6UXG2 1013 aaKnown RBP4.55□□□□□ -1.68
LINC00540-201ENST00000611481 NPNTQ6UXI9 565 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 SPNS3Q6ZMD2 512 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 ZNF517Q6ZMY9 492 aaPredicted RBP4.55□□□□□ -1.68
LINC00540-201ENST00000611481 C4orf50Q6ZRC1 276 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 MFSD6Q6ZSS7 791 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 TAOK1Q7L7X3 1001 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 DNAJB7Q7Z6W7 309 aaPredicted RBP4.55□□□□□ -1.68
LINC00540-201ENST00000611481 HEATR4Q86WZ0 1026 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 MCEMP1Q8IX19 187 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 SLC34A3Q8N130 599 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 NSUN7Q8NE18 718 aaKnown RBP4.55□□□□□ -1.68
LINC00540-201ENST00000611481 HDAC2Q92769 488 aaKnown RBP4.55□□□□□ -1.68
LINC00540-201ENST00000611481 ATP2A3Q93084 1043 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 RGMAQ96B86 450 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 KIF1BPQ96EK5 621 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 SH2D3AQ9BRG2 576 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 FUCA2Q9BTY2 467 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 GPR174Q9BXC1 333 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 RIC8AQ9NPQ8 531 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 TBC1D22BQ9NU19 505 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 DNAJC28Q9NX36 388 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 VSX1Q9NZR4 365 aaPredicted RBP4.55□□□□□ -1.68
LINC00540-201ENST00000611481 MAD2L2Q9UI95 211 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 FBXL5Q9UKA1 691 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 SATB2Q9UPW6 733 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 NFE2L3Q9Y4A8 694 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 GPR45Q9Y5Y3 372 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 SLCO1B1Q9Y6L6 691 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 ESPL1Q14674 2120 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 MYO18AQ92614 2054 aaKnown RBP4.55□□□□□ -1.68
LINC00540-201ENST00000611481 STAB1Q9NY15 2570 aa4.55□□□□□ -1.68
LINC00540-201ENST00000611481 A0A087WV62 115 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 RHPN2P1A8MT19 583 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 BTBD18B2RXH4 712 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 TARM1B6A8C7 271 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 PAPSS1O43252 624 aaPredicted RBP4.54□□□□□ -1.68
LINC00540-201ENST00000611481 TRAPPC3O43617 180 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 CYTH3O43739 400 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 SUN1O94901 812 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 FGF19O95750 216 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 RPN1P04843 607 aaKnown RBP4.54□□□□□ -1.68
LINC00540-201ENST00000611481 APODP05090 189 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 CD1AP06126 327 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 THP07101 528 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 HOXB2P14652 356 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 PPP3CBP16298 524 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 C5AR1P21730 350 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 TNFSF4P23510 183 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 CASP5P51878 434 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 AGFG1P52594 562 aaKnown RBP4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms