RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 LONRF2Q1L5Z9 754 aa19.25■□□□□ 0.67
UPF1-212ENST00000601689 FAM182AQ5T1J6 154 aa19.25■□□□□ 0.67
UPF1-212ENST00000601689 HENMT1Q5T8I9 393 aaKnown RBP19.25■□□□□ 0.67
UPF1-212ENST00000601689 DOK6Q6PKX4 331 aa19.25■□□□□ 0.67
UPF1-212ENST00000601689 TRAM1L1Q8N609 369 aa19.25■□□□□ 0.67
UPF1-212ENST00000601689 OR6C4Q8NGE1 309 aa19.25■□□□□ 0.67
UPF1-212ENST00000601689 OR1E3Q8WZA6 343 aa19.25■□□□□ 0.67
UPF1-212ENST00000601689 NAT6Q93015 286 aa19.25■□□□□ 0.67
UPF1-212ENST00000601689 PDXPQ96GD0 296 aa19.25■□□□□ 0.67
UPF1-212ENST00000601689 PLEKHG4BQ96PX9 1271 aa19.25■□□□□ 0.67
UPF1-212ENST00000601689 NAP1L3Q99457 506 aaPredicted RBP19.25■□□□□ 0.67
UPF1-212ENST00000601689 TCEAL2Q9H3H9 227 aaPredicted RBP19.25■□□□□ 0.67
UPF1-212ENST00000601689 RMI1Q9H9A7 625 aa19.25■□□□□ 0.67
UPF1-212ENST00000601689 MRPL40Q9NQ50 206 aaKnown RBP19.25■□□□□ 0.67
UPF1-212ENST00000601689 TRNAU1APQ9NX07 287 aaKnown RBP19.25■□□□□ 0.67
UPF1-212ENST00000601689 E7EVH7 732 aa19.24■□□□□ 0.67
UPF1-212ENST00000601689 INPP4BO15327 924 aa19.24■□□□□ 0.67
UPF1-212ENST00000601689 ZW10O43264 779 aa19.24■□□□□ 0.67
UPF1-212ENST00000601689 LIASO43766 372 aa19.24■□□□□ 0.67
UPF1-212ENST00000601689 CRTAMO95727 393 aa19.24■□□□□ 0.67
UPF1-212ENST00000601689 IFNB1P01574 187 aa19.24■□□□□ 0.67
UPF1-212ENST00000601689 GP1BAP07359 652 aa19.24■□□□□ 0.67
UPF1-212ENST00000601689 GNPDA1P46926 289 aa19.24■□□□□ 0.67
UPF1-212ENST00000601689 BIRC2Q13490 618 aa19.24■□□□□ 0.67
UPF1-212ENST00000601689 GSE1Q14687 1217 aa19.24■□□□□ 0.67
UPF1-212ENST00000601689 CCNG2Q16589 344 aa19.24■□□□□ 0.67
UPF1-212ENST00000601689 ALS2CLQ60I27 953 aa19.24■□□□□ 0.67
UPF1-212ENST00000601689 RFLNAQ6ZTI6 216 aa19.24■□□□□ 0.67
UPF1-212ENST00000601689 LINC00523Q86TU6 105 aa19.24■□□□□ 0.67
UPF1-212ENST00000601689 TMPRSS12Q86WS5 348 aa19.24■□□□□ 0.67
UPF1-212ENST00000601689 GALNT13Q8IUC8 556 aa19.24■□□□□ 0.67
UPF1-212ENST00000601689 FAM46DQ8NEK8 389 aa19.24■□□□□ 0.67
UPF1-212ENST00000601689 PBKQ96KB5 322 aa19.24■□□□□ 0.67
UPF1-212ENST00000601689 TBL1YQ9BQ87 522 aa19.24■□□□□ 0.67
UPF1-212ENST00000601689 FRMD8Q9BZ67 464 aaPredicted RBP19.24■□□□□ 0.67
UPF1-212ENST00000601689 SUDS3Q9H7L9 328 aaPredicted RBP19.24■□□□□ 0.67
UPF1-212ENST00000601689 LRRC40Q9H9A6 602 aa19.24■□□□□ 0.67
UPF1-212ENST00000601689 TOR4AQ9NXH8 423 aa19.24■□□□□ 0.67
UPF1-212ENST00000601689 NFKBIL1Q9UBC1 381 aaPredicted RBP19.24■□□□□ 0.67
UPF1-212ENST00000601689 GULP1Q9UBP9 304 aa19.24■□□□□ 0.67
UPF1-212ENST00000601689 SUFUQ9UMX1 484 aa19.24■□□□□ 0.67
UPF1-212ENST00000601689 GPR34Q9UPC5 381 aa19.24■□□□□ 0.67
UPF1-212ENST00000601689 SLC17A4Q9Y2C5 497 aa19.24■□□□□ 0.67
UPF1-212ENST00000601689 R3HDM2Q9Y2K5 976 aaKnown RBP19.24■□□□□ 0.67
UPF1-212ENST00000601689 GPSM3Q9Y4H4 160 aa19.24■□□□□ 0.67
UPF1-212ENST00000601689 LRP4O75096 1905 aa19.23■□□□□ 0.67
UPF1-212ENST00000601689 STX7O15400 261 aaKnown RBP19.23■□□□□ 0.67
UPF1-212ENST00000601689 SLC25A14O95258 325 aaPredicted RBP19.23■□□□□ 0.67
UPF1-212ENST00000601689 AGTP01019 485 aa19.23■□□□□ 0.67
UPF1-212ENST00000601689 FGGP02679 453 aa19.23■□□□□ 0.67
UPF1-212ENST00000601689 CEACAM5P06731 702 aa19.23■□□□□ 0.67
UPF1-212ENST00000601689 JUPP14923 745 aa19.23■□□□□ 0.67
UPF1-212ENST00000601689 FDFT1P37268 417 aa19.23■□□□□ 0.67
UPF1-212ENST00000601689 SPAM1P38567 509 aa19.23■□□□□ 0.67
UPF1-212ENST00000601689 DHRS13Q6UX07 377 aa19.23■□□□□ 0.67
UPF1-212ENST00000601689 C4orf22Q6V702 233 aa19.23■□□□□ 0.67
UPF1-212ENST00000601689 GSTA5Q7RTV2 222 aa19.23■□□□□ 0.67
UPF1-212ENST00000601689 PHYKPLQ8IUZ5 450 aa19.23■□□□□ 0.67
UPF1-212ENST00000601689 PELI3Q8N2H9 469 aa19.23■□□□□ 0.67
UPF1-212ENST00000601689 ARL10Q8N8L6 244 aa19.23■□□□□ 0.67
UPF1-212ENST00000601689 TTC25Q96NG3 672 aa19.23■□□□□ 0.67
UPF1-212ENST00000601689 BOCQ9BWV1 1114 aa19.23■□□□□ 0.67
UPF1-212ENST00000601689 TLR10Q9BXR5 811 aa19.23■□□□□ 0.67
UPF1-212ENST00000601689 CLPBQ9H078 707 aa19.23■□□□□ 0.67
UPF1-212ENST00000601689 TMEM168Q9H0V1 697 aa19.23■□□□□ 0.67
UPF1-212ENST00000601689 DPEP2Q9H4A9 486 aa19.23■□□□□ 0.67
UPF1-212ENST00000601689 VPS18Q9P253 973 aa19.23■□□□□ 0.67
UPF1-212ENST00000601689 MSRB2Q9Y3D2 182 aa19.23■□□□□ 0.67
UPF1-212ENST00000601689 TCRBV7S2A1N4TA0A589 114 aa19.22■□□□□ 0.67
UPF1-212ENST00000601689 CPED1A4D0V7 1026 aa19.22■□□□□ 0.67
UPF1-212ENST00000601689 ERI2A8K979 691 aaKnown RBP19.22■□□□□ 0.67
UPF1-212ENST00000601689 GPR89AB7ZAQ6 455 aa19.22■□□□□ 0.67
UPF1-212ENST00000601689 DKK1O94907 266 aa19.22■□□□□ 0.67
UPF1-212ENST00000601689 GPR89BP0CG08 455 aa19.22■□□□□ 0.67
UPF1-212ENST00000601689 GIMD1P0DJR0 217 aa19.22■□□□□ 0.67
UPF1-212ENST00000601689 LPOP22079 712 aaPredicted RBP19.22■□□□□ 0.67
UPF1-212ENST00000601689 CHRNA4P43681 627 aa19.22■□□□□ 0.67
UPF1-212ENST00000601689 SNX1Q13596 522 aa19.22■□□□□ 0.67
UPF1-212ENST00000601689 ITGA9Q13797 1035 aa19.22■□□□□ 0.67
UPF1-212ENST00000601689 LRP8Q14114 963 aa19.22■□□□□ 0.67
UPF1-212ENST00000601689 TCEA2Q15560 299 aa19.22■□□□□ 0.67
UPF1-212ENST00000601689 RANBP10Q6VN20 620 aa19.22■□□□□ 0.67
UPF1-212ENST00000601689 TMPRSS7Q7RTY8 843 aa19.22■□□□□ 0.67
UPF1-212ENST00000601689 WDR48Q8TAF3 677 aa19.22■□□□□ 0.67
UPF1-212ENST00000601689 GDAP1Q8TB36 358 aa19.22■□□□□ 0.67
UPF1-212ENST00000601689 IFI44Q8TCB0 444 aa19.22■□□□□ 0.67
UPF1-212ENST00000601689 BRSK1Q8TDC3 778 aa19.22■□□□□ 0.67
UPF1-212ENST00000601689 C1orf54Q8WWF1 131 aa19.22■□□□□ 0.67
UPF1-212ENST00000601689 ATG4AQ8WYN0 398 aa19.22■□□□□ 0.67
UPF1-212ENST00000601689 COX14Q96I36 57 aa19.22■□□□□ 0.67
UPF1-212ENST00000601689 PDLIM2Q96JY6 352 aa19.22■□□□□ 0.67
UPF1-212ENST00000601689 OR2M4Q96R27 311 aa19.22■□□□□ 0.67
UPF1-212ENST00000601689 BPIFA1Q9NP55 256 aa19.22■□□□□ 0.67
UPF1-212ENST00000601689 TRMT1Q9NXH9 659 aaKnown RBP19.22■□□□□ 0.67
UPF1-212ENST00000601689 PAK5Q9P286 719 aa19.22■□□□□ 0.67
UPF1-212ENST00000601689 ZNHIT2Q9UHR6 403 aa19.22■□□□□ 0.67
UPF1-212ENST00000601689 PNMA8BQ9ULN7 279 aaPredicted RBP19.22■□□□□ 0.67
UPF1-212ENST00000601689 EME2A4GXA9 379 aaPredicted RBP19.21■□□□□ 0.67
UPF1-212ENST00000601689 SOD1P00441 154 aa19.21■□□□□ 0.67
UPF1-212ENST00000601689 BPIP17213 487 aa19.21■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms