RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 CACNA1EQ15878 2313 aa19.24■□□□□ 0.67
UPF1-209ENST00000600310 RALGAPA1Q6GYQ0 2036 aa19.24■□□□□ 0.67
UPF1-209ENST00000600310 HEATR9A2RTY3 570 aa19.23■□□□□ 0.67
UPF1-209ENST00000600310 MYCLP1P12525 358 aaPredicted RBP19.23■□□□□ 0.67
UPF1-209ENST00000600310 KELP23276 732 aa19.23■□□□□ 0.67
UPF1-209ENST00000600310 DEKP35659 375 aaKnown RBP19.23■□□□□ 0.67
UPF1-209ENST00000600310 RXRGP48443 463 aa19.23■□□□□ 0.67
UPF1-209ENST00000600310 SESN2P58004 480 aaPredicted RBP19.23■□□□□ 0.67
UPF1-209ENST00000600310 MRPS25P82663 173 aaKnown RBP19.23■□□□□ 0.67
UPF1-209ENST00000600310 SEPT6Q14141 434 aa19.23■□□□□ 0.67
UPF1-209ENST00000600310 PRAMEF14Q5SWL7 426 aa19.23■□□□□ 0.67
UPF1-209ENST00000600310 IZUMO3Q5VZ72 239 aa19.23■□□□□ 0.67
UPF1-209ENST00000600310 CAND1Q86VP6 1230 aaKnown RBP19.23■□□□□ 0.67
UPF1-209ENST00000600310 HOOK3Q86VS8 718 aa19.23■□□□□ 0.67
UPF1-209ENST00000600310 PARGQ86W56 976 aa19.23■□□□□ 0.67
UPF1-209ENST00000600310 KIAA2013Q8IYS2 634 aa19.23■□□□□ 0.67
UPF1-209ENST00000600310 OR13C4Q8NGS5 318 aa19.23■□□□□ 0.67
UPF1-209ENST00000600310 OR2I1PQ8NGU4 316 aa19.23■□□□□ 0.67
UPF1-209ENST00000600310 SPATA16Q9BXB7 569 aa19.23■□□□□ 0.67
UPF1-209ENST00000600310 IL22Q9GZX6 179 aa19.23■□□□□ 0.67
UPF1-209ENST00000600310 IL21RQ9HBE5 538 aa19.23■□□□□ 0.67
UPF1-209ENST00000600310 XAB2Q9HCS7 855 aaKnown RBP19.23■□□□□ 0.67
UPF1-209ENST00000600310 TMEM9BQ9NQ34 198 aa19.23■□□□□ 0.67
UPF1-209ENST00000600310 DNAAF2Q9NVR5 837 aaKnown RBP19.23■□□□□ 0.67
UPF1-209ENST00000600310 RIMKLBQ9ULI2 386 aa19.23■□□□□ 0.67
UPF1-209ENST00000600310 CNOT6Q9ULM6 557 aaKnown RBP19.23■□□□□ 0.67
UPF1-209ENST00000600310 EP300Q09472 2414 aaPredicted RBP19.23■□□□□ 0.67
UPF1-209ENST00000600310 SPTBN4Q9H254 2564 aa19.22■□□□□ 0.67
UPF1-209ENST00000600310 A0A1B0GTQ1 180 aa19.22■□□□□ 0.67
UPF1-209ENST00000600310 EFCAB8A8MWE9 144 aa19.22■□□□□ 0.67
UPF1-209ENST00000600310 ESPNB1AK53 854 aa19.22■□□□□ 0.67
UPF1-209ENST00000600310 GDF9O60383 454 aa19.22■□□□□ 0.67
UPF1-209ENST00000600310 HADHAP40939 763 aa19.22■□□□□ 0.67
UPF1-209ENST00000600310 EIF2B5Q13144 721 aaKnown RBP19.22■□□□□ 0.67
UPF1-209ENST00000600310 CHRNA6Q15825 494 aa19.22■□□□□ 0.67
UPF1-209ENST00000600310 PCID2Q5JVF3 399 aa19.22■□□□□ 0.67
UPF1-209ENST00000600310 ENPP7Q6UWV6 458 aa19.22■□□□□ 0.67
UPF1-209ENST00000600310 COX14Q96I36 57 aa19.22■□□□□ 0.67
UPF1-209ENST00000600310 HIC2Q96JB3 615 aa19.22■□□□□ 0.67
UPF1-209ENST00000600310 DNAJC1Q96KC8 554 aaKnown RBP19.22■□□□□ 0.67
UPF1-209ENST00000600310 WDR92Q96MX6 357 aa19.22■□□□□ 0.67
UPF1-209ENST00000600310 SERPINB12Q96P63 405 aa19.22■□□□□ 0.67
UPF1-209ENST00000600310 ERP44Q9BS26 406 aa19.22■□□□□ 0.67
UPF1-209ENST00000600310 NLE1Q9NVX2 485 aaPredicted RBP19.22■□□□□ 0.67
UPF1-209ENST00000600310 FNDC3AQ9Y2H6 1198 aaKnown RBP19.22■□□□□ 0.67
UPF1-209ENST00000600310 TCAF1Q9Y4C2 921 aa19.22■□□□□ 0.67
UPF1-209ENST00000600310 GLYATL1P3A0A0U1RQE8 302 aa19.21■□□□□ 0.67
UPF1-209ENST00000600310 CTAGE15A4D2H0 777 aa19.21■□□□□ 0.67
UPF1-209ENST00000600310 GOLGA8MH3BSY2 632 aa19.21■□□□□ 0.67
UPF1-209ENST00000600310 H7C0S8 307 aa19.21■□□□□ 0.67
UPF1-209ENST00000600310 SMAPO00193 183 aa19.21■□□□□ 0.67
UPF1-209ENST00000600310 GAPDHSO14556 408 aaPredicted RBP19.21■□□□□ 0.67
UPF1-209ENST00000600310 TNFRSF10CO14798 259 aa19.21■□□□□ 0.67
UPF1-209ENST00000600310 INPP4BO15327 924 aa19.21■□□□□ 0.67
UPF1-209ENST00000600310 YKT6O15498 198 aa19.21■□□□□ 0.67
UPF1-209ENST00000600310 SEC31AO94979 1220 aaKnown RBP19.21■□□□□ 0.67
UPF1-209ENST00000600310 ZNF883P0CG24 379 aa19.21■□□□□ 0.67
UPF1-209ENST00000600310 CTAGE8P0CG41 777 aa19.21■□□□□ 0.67
UPF1-209ENST00000600310 MGAT1P26572 445 aa19.21■□□□□ 0.67
UPF1-209ENST00000600310 MAGEA3P43357 314 aa19.21■□□□□ 0.67
UPF1-209ENST00000600310 ARRB1P49407 418 aaPredicted RBP19.21■□□□□ 0.67
UPF1-209ENST00000600310 LIMK1P53667 647 aa19.21■□□□□ 0.67
UPF1-209ENST00000600310 XIAPP98170 497 aa19.21■□□□□ 0.67
UPF1-209ENST00000600310 MORF4L2Q15014 288 aa19.21■□□□□ 0.67
UPF1-209ENST00000600310 SHBQ15464 509 aa19.21■□□□□ 0.67
UPF1-209ENST00000600310 SKIDA1Q1XH10 827 aa19.21■□□□□ 0.67
UPF1-209ENST00000600310 CCDC38Q502W7 563 aa19.21■□□□□ 0.67
UPF1-209ENST00000600310 TSTD2Q5T7W7 516 aa19.21■□□□□ 0.67
UPF1-209ENST00000600310 ARMC3Q5W041 872 aa19.21■□□□□ 0.67
UPF1-209ENST00000600310 FAM151BQ6UXP7 276 aa19.21■□□□□ 0.67
UPF1-209ENST00000600310 NLRP9Q7RTR0 991 aa19.21■□□□□ 0.67
UPF1-209ENST00000600310 CTAGE6Q86UF2 777 aa19.21■□□□□ 0.67
UPF1-209ENST00000600310 CTAGE4Q8IX94 777 aa19.21■□□□□ 0.67
UPF1-209ENST00000600310 PPHLN1Q8NEY8 458 aaKnown RBP19.21■□□□□ 0.67
UPF1-209ENST00000600310 PEX13Q92968 403 aa19.21■□□□□ 0.67
UPF1-209ENST00000600310 SNF8Q96H20 258 aa19.21■□□□□ 0.67
UPF1-209ENST00000600310 FRMD8Q9BZ67 464 aaPredicted RBP19.21■□□□□ 0.67
UPF1-209ENST00000600310 TRIM31Q9BZY9 425 aa19.21■□□□□ 0.67
UPF1-209ENST00000600310 FKBPLQ9UIM3 349 aa19.21■□□□□ 0.67
UPF1-209ENST00000600310 APPL1Q9UKG1 709 aa19.21■□□□□ 0.67
UPF1-209ENST00000600310 WDR87Q6ZQQ6 2873 aa19.21■□□□□ 0.67
UPF1-209ENST00000600310 LOC105378220A0A1B0GUY1 285 aaPredicted RBP19.2■□□□□ 0.66
UPF1-209ENST00000600310 TMEM202A6NGA9 273 aa19.2■□□□□ 0.66
UPF1-209ENST00000600310 AVILO75366 819 aa19.2■□□□□ 0.66
UPF1-209ENST00000600310 CSF2P04141 144 aa19.2■□□□□ 0.66
UPF1-209ENST00000600310 NME1P15531 152 aaKnown RBP19.2■□□□□ 0.66
UPF1-209ENST00000600310 RPL21P46778 160 aaKnown RBP19.2■□□□□ 0.66
UPF1-209ENST00000600310 CCT8P50990 548 aa19.2■□□□□ 0.66
UPF1-209ENST00000600310 ARHGAP8P85298 464 aa19.2■□□□□ 0.66
UPF1-209ENST00000600310 TMPRSS15P98073 1019 aa19.2■□□□□ 0.66
UPF1-209ENST00000600310 ALG11Q2TAA5 492 aa19.2■□□□□ 0.66
UPF1-209ENST00000600310 ATP13A5Q4VNC0 1218 aa19.2■□□□□ 0.66
UPF1-209ENST00000600310 STPG1Q5TH74 334 aa19.2■□□□□ 0.66
UPF1-209ENST00000600310 HIBCHQ6NVY1 386 aaPredicted RBP19.2■□□□□ 0.66
UPF1-209ENST00000600310 MMGT1Q8N4V1 131 aa19.2■□□□□ 0.66
UPF1-209ENST00000600310 CEP112Q8N8E3 955 aa19.2■□□□□ 0.66
UPF1-209ENST00000600310 BBOF1Q8ND07 529 aa19.2■□□□□ 0.66
UPF1-209ENST00000600310 OR56A4Q8NGH8 313 aa19.2■□□□□ 0.66
UPF1-209ENST00000600310 PTCD2Q8WV60 388 aaKnown RBP19.2■□□□□ 0.66
UPF1-209ENST00000600310 BTN2A2Q8WVV5 523 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms