RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 SUDS3Q9H7L9 328 aaPredicted RBP13.78□□□□□ -0.2
UPF1-205ENST00000598209 CARS2Q9HA77 564 aaKnown RBP13.78□□□□□ -0.2
UPF1-205ENST00000598209 RAD18Q9NS91 495 aa13.78□□□□□ -0.2
UPF1-205ENST00000598209 HACD3Q9P035 362 aa13.78□□□□□ -0.2
UPF1-205ENST00000598209 RP1P56715 2156 aa13.78□□□□□ -0.2
UPF1-205ENST00000598209 ASXL3Q9C0F0 2248 aa13.78□□□□□ -0.2
UPF1-205ENST00000598209 LY6G6EA0A0G2JKS1 128 aa13.77□□□□□ -0.21
UPF1-205ENST00000598209 FADS2P1A8MWK0 482 aa13.77□□□□□ -0.21
UPF1-205ENST00000598209 CEP104O60308 925 aa13.77□□□□□ -0.21
UPF1-205ENST00000598209 FUCA1P04066 466 aa13.77□□□□□ -0.21
UPF1-205ENST00000598209 IVLP07476 585 aa13.77□□□□□ -0.21
UPF1-205ENST00000598209 CKMT1AP12532 417 aa13.77□□□□□ -0.21
UPF1-205ENST00000598209 BPIP17213 487 aa13.77□□□□□ -0.21
UPF1-205ENST00000598209 CXCR5P32302 372 aa13.77□□□□□ -0.21
UPF1-205ENST00000598209 POLD2P49005 469 aa13.77□□□□□ -0.21
UPF1-205ENST00000598209 DCDC1P59894 354 aa13.77□□□□□ -0.21
UPF1-205ENST00000598209 OLIG2Q13516 323 aa13.77□□□□□ -0.21
UPF1-205ENST00000598209 SNX1Q13596 522 aa13.77□□□□□ -0.21
UPF1-205ENST00000598209 SIX1Q15475 284 aaPredicted RBP13.77□□□□□ -0.21
UPF1-205ENST00000598209 PARP6Q2NL67 630 aa13.77□□□□□ -0.21
UPF1-205ENST00000598209 C6orf132Q5T0Z8 1188 aa13.77□□□□□ -0.21
UPF1-205ENST00000598209 LVRNQ6Q4G3 990 aa13.77□□□□□ -0.21
UPF1-205ENST00000598209 DHRS13Q6UX07 377 aa13.77□□□□□ -0.21
UPF1-205ENST00000598209 RANBP10Q6VN20 620 aa13.77□□□□□ -0.21
UPF1-205ENST00000598209 KLHDC8BQ8IXV7 354 aa13.77□□□□□ -0.21
UPF1-205ENST00000598209 SDR16C5Q8N3Y7 309 aa13.77□□□□□ -0.21
UPF1-205ENST00000598209 TTC30BQ8N4P2 665 aa13.77□□□□□ -0.21
UPF1-205ENST00000598209 BLOC1S5Q8TDH9 187 aa13.77□□□□□ -0.21
UPF1-205ENST00000598209 PTCD2Q8WV60 388 aaKnown RBP13.77□□□□□ -0.21
UPF1-205ENST00000598209 RTP4Q96DX8 246 aa13.77□□□□□ -0.21
UPF1-205ENST00000598209 COX14Q96I36 57 aa13.77□□□□□ -0.21
UPF1-205ENST00000598209 APOL2Q9BQE5 337 aa13.77□□□□□ -0.21
UPF1-205ENST00000598209 BOCQ9BWV1 1114 aa13.77□□□□□ -0.21
UPF1-205ENST00000598209 SPATA16Q9BXB7 569 aa13.77□□□□□ -0.21
UPF1-205ENST00000598209 TMEM168Q9H0V1 697 aa13.77□□□□□ -0.21
UPF1-205ENST00000598209 CDH19Q9H159 772 aa13.77□□□□□ -0.21
UPF1-205ENST00000598209 BPIFA1Q9NP55 256 aa13.77□□□□□ -0.21
UPF1-205ENST00000598209 EVA1BQ9NVM1 165 aa13.77□□□□□ -0.21
UPF1-205ENST00000598209 TRMT1Q9NXH9 659 aaKnown RBP13.77□□□□□ -0.21
UPF1-205ENST00000598209 NFKBIL1Q9UBC1 381 aaPredicted RBP13.77□□□□□ -0.21
UPF1-205ENST00000598209 KLK13Q9UKR3 277 aa13.77□□□□□ -0.21
UPF1-205ENST00000598209 CNOT6Q9ULM6 557 aaKnown RBP13.77□□□□□ -0.21
UPF1-205ENST00000598209 SUFUQ9UMX1 484 aa13.77□□□□□ -0.21
UPF1-205ENST00000598209 ZNF148Q9UQR1 794 aa13.77□□□□□ -0.21
UPF1-205ENST00000598209 SLC17A4Q9Y2C5 497 aa13.77□□□□□ -0.21
UPF1-205ENST00000598209 TMEM98Q9Y2Y6 226 aa13.77□□□□□ -0.21
UPF1-205ENST00000598209 U3KQA8 63 aa13.77□□□□□ -0.21
UPF1-205ENST00000598209 METTL18O95568 372 aa13.76□□□□□ -0.21
UPF1-205ENST00000598209 ASMTLO95671 621 aa13.76□□□□□ -0.21
UPF1-205ENST00000598209 FGGP02679 453 aa13.76□□□□□ -0.21
UPF1-205ENST00000598209 CDK4P11802 303 aa13.76□□□□□ -0.21
UPF1-205ENST00000598209 STIP1P31948 543 aaKnown RBP13.76□□□□□ -0.21
UPF1-205ENST00000598209 HMGCLP35914 325 aa13.76□□□□□ -0.21
UPF1-205ENST00000598209 GNPDA1P46926 289 aa13.76□□□□□ -0.21
UPF1-205ENST00000598209 DUSP3P51452 185 aaPredicted RBP13.76□□□□□ -0.21
UPF1-205ENST00000598209 ILKQ13418 452 aa13.76□□□□□ -0.21
UPF1-205ENST00000598209 SPARCL1Q14515 664 aa13.76□□□□□ -0.21
UPF1-205ENST00000598209 GSE1Q14687 1217 aa13.76□□□□□ -0.21
UPF1-205ENST00000598209 NR0B2Q15466 257 aa13.76□□□□□ -0.21
UPF1-205ENST00000598209 P3H1Q32P28 736 aa13.76□□□□□ -0.21
UPF1-205ENST00000598209 ZNF569Q5MCW4 686 aa13.76□□□□□ -0.21
UPF1-205ENST00000598209 GLT6D1Q7Z4J2 308 aa13.76□□□□□ -0.21
UPF1-205ENST00000598209 TAF8Q7Z7C8 310 aa13.76□□□□□ -0.21
UPF1-205ENST00000598209 SLC35F6Q8N357 371 aa13.76□□□□□ -0.21
UPF1-205ENST00000598209 TRAM1L1Q8N609 369 aa13.76□□□□□ -0.21
UPF1-205ENST00000598209 CCL4L1Q8NHW4 92 aa13.76□□□□□ -0.21
UPF1-205ENST00000598209 MAIP1Q8WWC4 291 aa13.76□□□□□ -0.21
UPF1-205ENST00000598209 SCG3Q8WXD2 468 aaKnown RBP13.76□□□□□ -0.21
UPF1-205ENST00000598209 GLMNQ92990 594 aa13.76□□□□□ -0.21
UPF1-205ENST00000598209 LRRC45Q96CN5 670 aa13.76□□□□□ -0.21
UPF1-205ENST00000598209 TBL1YQ9BQ87 522 aa13.76□□□□□ -0.21
UPF1-205ENST00000598209 ZSCAN5AQ9BUG6 496 aa13.76□□□□□ -0.21
UPF1-205ENST00000598209 NCKIPSDQ9NZQ3 722 aa13.76□□□□□ -0.21
UPF1-205ENST00000598209 JRKLQ9Y4A0 524 aa13.76□□□□□ -0.21
UPF1-205ENST00000598209 NEUROG3Q9Y4Z2 214 aa13.76□□□□□ -0.21
UPF1-205ENST00000598209 OAS3Q9Y6K5 1087 aaKnown RBP13.76□□□□□ -0.21
UPF1-205ENST00000598209 SPEGQ15772 3267 aa13.75□□□□□ -0.21
UPF1-205ENST00000598209 USP12O75317 370 aa13.75□□□□□ -0.21
UPF1-205ENST00000598209 IFNB1P01574 187 aa13.75□□□□□ -0.21
UPF1-205ENST00000598209 ATP1A1P05023 1023 aaKnown RBP13.75□□□□□ -0.21
UPF1-205ENST00000598209 CCNG2Q16589 344 aa13.75□□□□□ -0.21
UPF1-205ENST00000598209 LONRF2Q1L5Z9 754 aa13.75□□□□□ -0.21
UPF1-205ENST00000598209 KCTD11Q693B1 232 aa13.75□□□□□ -0.21
UPF1-205ENST00000598209 MARK2Q7KZI7 788 aaKnown RBP13.75□□□□□ -0.21
UPF1-205ENST00000598209 TMPRSS7Q7RTY8 843 aa13.75□□□□□ -0.21
UPF1-205ENST00000598209 SLC35F3Q8IY50 421 aa13.75□□□□□ -0.21
UPF1-205ENST00000598209 TAB3Q8N5C8 712 aaPredicted RBP13.75□□□□□ -0.21
UPF1-205ENST00000598209 SCARF2Q96GP6 870 aaPredicted RBP13.75□□□□□ -0.21
UPF1-205ENST00000598209 PLEKHG4BQ96PX9 1271 aa13.75□□□□□ -0.21
UPF1-205ENST00000598209 TRNAU1APQ9NX07 287 aaKnown RBP13.75□□□□□ -0.21
UPF1-205ENST00000598209 IL17CQ9P0M4 197 aa13.75□□□□□ -0.21
UPF1-205ENST00000598209 SIRPGQ9P1W8 387 aa13.75□□□□□ -0.21
UPF1-205ENST00000598209 GPR34Q9UPC5 381 aa13.75□□□□□ -0.21
UPF1-205ENST00000598209 ZKSCAN5Q9Y2L8 839 aa13.75□□□□□ -0.21
UPF1-205ENST00000598209 KNTC1P50748 2209 aa13.75□□□□□ -0.21
UPF1-205ENST00000598209 CPED1A4D0V7 1026 aa13.74□□□□□ -0.21
UPF1-205ENST00000598209 PSMD3O43242 534 aa13.74□□□□□ -0.21
UPF1-205ENST00000598209 BUD23O43709 281 aaKnown RBP13.74□□□□□ -0.21
UPF1-205ENST00000598209 KIF5CO60282 957 aa13.74□□□□□ -0.21
UPF1-205ENST00000598209 ETS1P14921 441 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms