RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 USP12O75317 370 aa14.48□□□□□ -0.09
VRK3-206ENST00000594090 TRIM16O95361 564 aa14.48□□□□□ -0.09
VRK3-206ENST00000594090 ATP1A1P05023 1023 aaKnown RBP14.48□□□□□ -0.09
VRK3-206ENST00000594090 CEACAM5P06731 702 aa14.48□□□□□ -0.09
VRK3-206ENST00000594090 BPIP17213 487 aa14.48□□□□□ -0.09
VRK3-206ENST00000594090 MSNP26038 577 aaKnown RBP14.48□□□□□ -0.09
VRK3-206ENST00000594090 HMGCLP35914 325 aa14.48□□□□□ -0.09
VRK3-206ENST00000594090 ACADVLP49748 655 aa14.48□□□□□ -0.09
VRK3-206ENST00000594090 TCEA2Q15560 299 aa14.48□□□□□ -0.09
VRK3-206ENST00000594090 ZCCHC8Q6NZY4 707 aaKnown RBP14.48□□□□□ -0.09
VRK3-206ENST00000594090 DRICH1Q6PGQ1 229 aaPredicted RBP14.48□□□□□ -0.09
VRK3-206ENST00000594090 RASGEF1CQ8N431 466 aa14.48□□□□□ -0.09
VRK3-206ENST00000594090 FAM181AQ8N9Y4 354 aa14.48□□□□□ -0.09
VRK3-206ENST00000594090 ADAMTS14Q8WXS8 1223 aa14.48□□□□□ -0.09
VRK3-206ENST00000594090 LRRC45Q96CN5 670 aa14.48□□□□□ -0.09
VRK3-206ENST00000594090 APOLD1Q96LR9 279 aa14.48□□□□□ -0.09
VRK3-206ENST00000594090 TBL1YQ9BQ87 522 aa14.48□□□□□ -0.09
VRK3-206ENST00000594090 ZSCAN5AQ9BUG6 496 aa14.48□□□□□ -0.09
VRK3-206ENST00000594090 SPATA16Q9BXB7 569 aa14.48□□□□□ -0.09
VRK3-206ENST00000594090 CDH19Q9H159 772 aa14.48□□□□□ -0.09
VRK3-206ENST00000594090 BPIFA1Q9NP55 256 aa14.48□□□□□ -0.09
VRK3-206ENST00000594090 WASF3Q9UPY6 502 aa14.48□□□□□ -0.09
VRK3-206ENST00000594090 SLC17A4Q9Y2C5 497 aa14.48□□□□□ -0.09
VRK3-206ENST00000594090 ARID1BQ8NFD5 2236 aaPredicted RBP14.47□□□□□ -0.09
VRK3-206ENST00000594090 ZNF106Q9H2Y7 1883 aaKnown RBP14.47□□□□□ -0.09
VRK3-206ENST00000594090 IFNB1P01574 187 aa14.47□□□□□ -0.09
VRK3-206ENST00000594090 FUCA1P04066 466 aa14.47□□□□□ -0.09
VRK3-206ENST00000594090 ANXA6P08133 673 aa14.47□□□□□ -0.09
VRK3-206ENST00000594090 CKMT2P17540 419 aa14.47□□□□□ -0.09
VRK3-206ENST00000594090 POLD2P49005 469 aa14.47□□□□□ -0.09
VRK3-206ENST00000594090 SPARCL1Q14515 664 aa14.47□□□□□ -0.09
VRK3-206ENST00000594090 C6orf132Q5T0Z8 1188 aa14.47□□□□□ -0.09
VRK3-206ENST00000594090 DOK6Q6PKX4 331 aa14.47□□□□□ -0.09
VRK3-206ENST00000594090 RAB44Q7Z6P3 723 aaPredicted RBP14.47□□□□□ -0.09
VRK3-206ENST00000594090 TRAM1L1Q8N609 369 aa14.47□□□□□ -0.09
VRK3-206ENST00000594090 PTCD2Q8WV60 388 aaKnown RBP14.47□□□□□ -0.09
VRK3-206ENST00000594090 PBKQ96KB5 322 aa14.47□□□□□ -0.09
VRK3-206ENST00000594090 PLEKHG4BQ96PX9 1271 aa14.47□□□□□ -0.09
VRK3-206ENST00000594090 SUDS3Q9H7L9 328 aaPredicted RBP14.47□□□□□ -0.09
VRK3-206ENST00000594090 LRRC40Q9H9A6 602 aa14.47□□□□□ -0.09
VRK3-206ENST00000594090 CARS2Q9HA77 564 aaKnown RBP14.47□□□□□ -0.09
VRK3-206ENST00000594090 CNOT6Q9ULM6 557 aaKnown RBP14.47□□□□□ -0.09
VRK3-206ENST00000594090 SUFUQ9UMX1 484 aa14.47□□□□□ -0.09
VRK3-206ENST00000594090 DOLKQ9UPQ8 538 aa14.47□□□□□ -0.09
VRK3-206ENST00000594090 PCDHGA1Q9Y5H4 931 aa14.47□□□□□ -0.09
VRK3-206ENST00000594090 MYLKQ15746 1914 aa14.46□□□□□ -0.09
VRK3-206ENST00000594090 LY6G6EA0A0G2JKS1 128 aa14.46□□□□□ -0.09
VRK3-206ENST00000594090 YY2O15391 372 aa14.46□□□□□ -0.09
VRK3-206ENST00000594090 HYAL3O43820 417 aaPredicted RBP14.46□□□□□ -0.09
VRK3-206ENST00000594090 RFPL3O75679 317 aa14.46□□□□□ -0.09
VRK3-206ENST00000594090 AP2A1O95782 977 aa14.46□□□□□ -0.09
VRK3-206ENST00000594090 TOP3BO95985 862 aaKnown RBP14.46□□□□□ -0.09
VRK3-206ENST00000594090 IVLP07476 585 aa14.46□□□□□ -0.09
VRK3-206ENST00000594090 CKMT1AP12532 417 aa14.46□□□□□ -0.09
VRK3-206ENST00000594090 ACP1P24666 158 aa14.46□□□□□ -0.09
VRK3-206ENST00000594090 ACTN2P35609 894 aa14.46□□□□□ -0.09
VRK3-206ENST00000594090 GNPDA1P46926 289 aa14.46□□□□□ -0.09
VRK3-206ENST00000594090 SHC2P98077 582 aa14.46□□□□□ -0.09
VRK3-206ENST00000594090 DAB2P98082 770 aa14.46□□□□□ -0.09
VRK3-206ENST00000594090 CCDC157Q569K6 752 aa14.46□□□□□ -0.09
VRK3-206ENST00000594090 PDPK2PQ6A1A2 396 aa14.46□□□□□ -0.09
VRK3-206ENST00000594090 DENND5AQ6IQ26 1287 aa14.46□□□□□ -0.09
VRK3-206ENST00000594090 PRUNE1Q86TP1 453 aa14.46□□□□□ -0.09
VRK3-206ENST00000594090 GKN2Q86XP6 184 aa14.46□□□□□ -0.09
VRK3-206ENST00000594090 SDR16C5Q8N3Y7 309 aa14.46□□□□□ -0.09
VRK3-206ENST00000594090 TAB3Q8N5C8 712 aaPredicted RBP14.46□□□□□ -0.09
VRK3-206ENST00000594090 CCDC89Q8N998 374 aa14.46□□□□□ -0.09
VRK3-206ENST00000594090 SCARF2Q96GP6 870 aaPredicted RBP14.46□□□□□ -0.09
VRK3-206ENST00000594090 OSBPL9Q96SU4 736 aa14.46□□□□□ -0.09
VRK3-206ENST00000594090 BOCQ9BWV1 1114 aa14.46□□□□□ -0.09
VRK3-206ENST00000594090 TMEM168Q9H0V1 697 aa14.46□□□□□ -0.09
VRK3-206ENST00000594090 ARNT2Q9HBZ2 717 aa14.46□□□□□ -0.09
VRK3-206ENST00000594090 IL17CQ9P0M4 197 aa14.46□□□□□ -0.09
VRK3-206ENST00000594090 FEZ2Q9UHY8 353 aaPredicted RBP14.46□□□□□ -0.09
VRK3-206ENST00000594090 TMEM98Q9Y2Y6 226 aa14.46□□□□□ -0.09
VRK3-206ENST00000594090 PKP3Q9Y446 797 aa14.46□□□□□ -0.09
VRK3-206ENST00000594090 ARL5AQ9Y689 179 aa14.46□□□□□ -0.09
VRK3-206ENST00000594090 OAS3Q9Y6K5 1087 aaKnown RBP14.46□□□□□ -0.09
VRK3-206ENST00000594090 U3KQA8 63 aa14.46□□□□□ -0.09
VRK3-206ENST00000594090 PSMD3O43242 534 aa14.45□□□□□ -0.1
VRK3-206ENST00000594090 MYF5P13349 255 aa14.45□□□□□ -0.1
VRK3-206ENST00000594090 ETS1P14921 441 aa14.45□□□□□ -0.1
VRK3-206ENST00000594090 FDFT1P37268 417 aa14.45□□□□□ -0.1
VRK3-206ENST00000594090 SPAM1P38567 509 aa14.45□□□□□ -0.1
VRK3-206ENST00000594090 MSLNQ13421 630 aaPredicted RBP14.45□□□□□ -0.1
VRK3-206ENST00000594090 TAF1AQ15573 450 aaPredicted RBP14.45□□□□□ -0.1
VRK3-206ENST00000594090 ZDHHC20Q5W0Z9 365 aa14.45□□□□□ -0.1
VRK3-206ENST00000594090 LVRNQ6Q4G3 990 aa14.45□□□□□ -0.1
VRK3-206ENST00000594090 CHCHD4Q8N4Q1 142 aa14.45□□□□□ -0.1
VRK3-206ENST00000594090 PDCD7Q8N8D1 485 aaKnown RBP14.45□□□□□ -0.1
VRK3-206ENST00000594090 PRELID2Q8N945 189 aa14.45□□□□□ -0.1
VRK3-206ENST00000594090 GLIS1Q8NBF1 620 aa14.45□□□□□ -0.1
VRK3-206ENST00000594090 GLYATL1Q969I3 302 aa14.45□□□□□ -0.1
VRK3-206ENST00000594090 MS4A14Q96JA4 679 aa14.45□□□□□ -0.1
VRK3-206ENST00000594090 ETNK1Q9HBU6 452 aa14.45□□□□□ -0.1
VRK3-206ENST00000594090 HOMER3Q9NSC5 361 aa14.45□□□□□ -0.1
VRK3-206ENST00000594090 EVA1BQ9NVM1 165 aa14.45□□□□□ -0.1
VRK3-206ENST00000594090 VPS18Q9P253 973 aa14.45□□□□□ -0.1
VRK3-206ENST00000594090 PAK5Q9P286 719 aa14.45□□□□□ -0.1
VRK3-206ENST00000594090 ANGPTL2Q9UKU9 493 aa14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms