RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 HENMT1Q5T8I9 393 aaKnown RBP15.18■□□□□ 0.02
TRIM28-203ENST00000593582 SLC30A9Q6PML9 568 aa15.18■□□□□ 0.02
TRIM28-203ENST00000593582 C19orf48Q6RUI8 117 aa15.18■□□□□ 0.02
TRIM28-203ENST00000593582 BBS12Q6ZW61 710 aa15.18■□□□□ 0.02
TRIM28-203ENST00000593582 LYSMD3Q7Z3D4 306 aa15.18■□□□□ 0.02
TRIM28-203ENST00000593582 TRIM74Q86UV6 250 aa15.18■□□□□ 0.02
TRIM28-203ENST00000593582 TXLNBQ8N3L3 684 aa15.18■□□□□ 0.02
TRIM28-203ENST00000593582 ACRBPQ8NEB7 543 aa15.18■□□□□ 0.02
TRIM28-203ENST00000593582 PTCD2Q8WV60 388 aaKnown RBP15.18■□□□□ 0.02
TRIM28-203ENST00000593582 HNRNPLLQ8WVV9 542 aaKnown RBP15.18■□□□□ 0.02
TRIM28-203ENST00000593582 HTR3CQ8WXA8 447 aa15.18■□□□□ 0.02
TRIM28-203ENST00000593582 FGF11Q92914 225 aa15.18■□□□□ 0.02
TRIM28-203ENST00000593582 SCARF2Q96GP6 870 aaPredicted RBP15.18■□□□□ 0.02
TRIM28-203ENST00000593582 ATXN7L3BQ96GX2 97 aa15.18■□□□□ 0.02
TRIM28-203ENST00000593582 COX14Q96I36 57 aa15.18■□□□□ 0.02
TRIM28-203ENST00000593582 SRPK1Q96SB4 655 aaKnown RBP15.18■□□□□ 0.02
TRIM28-203ENST00000593582 VAT1Q99536 393 aa15.18■□□□□ 0.02
TRIM28-203ENST00000593582 LACRTQ9GZZ8 138 aa15.18■□□□□ 0.02
TRIM28-203ENST00000593582 POLR1BQ9H9Y6 1135 aa15.18■□□□□ 0.02
TRIM28-203ENST00000593582 SPATS2LQ9NUQ6 558 aaKnown RBP15.18■□□□□ 0.02
TRIM28-203ENST00000593582 UBP1Q9NZI7 540 aa15.18■□□□□ 0.02
TRIM28-203ENST00000593582 TAAR2Q9P1P5 351 aa15.18■□□□□ 0.02
TRIM28-203ENST00000593582 KLHL8Q9P2G9 620 aaPredicted RBP15.18■□□□□ 0.02
TRIM28-203ENST00000593582 LRIT1Q9P2V4 623 aa15.18■□□□□ 0.02
TRIM28-203ENST00000593582 IMPACTQ9P2X3 320 aa15.18■□□□□ 0.02
TRIM28-203ENST00000593582 LHX6Q9UPM6 363 aa15.18■□□□□ 0.02
TRIM28-203ENST00000593582 SHOC2Q9UQ13 582 aa15.18■□□□□ 0.02
TRIM28-203ENST00000593582 PCDHA3Q9Y5H8 950 aa15.18■□□□□ 0.02
TRIM28-203ENST00000593582 ITPR1Q14643 2758 aa15.17■□□□□ 0.02
TRIM28-203ENST00000593582 APOC4-APOC2K7ER74 178 aa15.17■□□□□ 0.02
TRIM28-203ENST00000593582 NUDT21O43809 227 aaKnown RBP15.17■□□□□ 0.02
TRIM28-203ENST00000593582 ASMTLO95671 621 aa15.17■□□□□ 0.02
TRIM28-203ENST00000593582 NDST3O95803 873 aa15.17■□□□□ 0.02
TRIM28-203ENST00000593582 APOC2P02655 101 aa15.17■□□□□ 0.02
TRIM28-203ENST00000593582 FGF1P05230 155 aa15.17■□□□□ 0.02
TRIM28-203ENST00000593582 RPLP0P05388 317 aaKnown RBP15.17■□□□□ 0.02
TRIM28-203ENST00000593582 PIRTP0C851 137 aa15.17■□□□□ 0.02
TRIM28-203ENST00000593582 AK4P27144 223 aaPredicted RBP15.17■□□□□ 0.02
TRIM28-203ENST00000593582 CDC25BP30305 580 aa15.17■□□□□ 0.02
TRIM28-203ENST00000593582 CETN2P41208 172 aa15.17■□□□□ 0.02
TRIM28-203ENST00000593582 CCL7P80098 99 aa15.17■□□□□ 0.02
TRIM28-203ENST00000593582 CTBSQ01459 385 aa15.17■□□□□ 0.02
TRIM28-203ENST00000593582 HLTFQ14527 1009 aaKnown RBP eCLIP15.17■□□□□ 0.02
TRIM28-203ENST00000593582 LRRC69Q6ZNQ3 347 aa15.17■□□□□ 0.02
TRIM28-203ENST00000593582 MARK2Q7KZI7 788 aaKnown RBP15.17■□□□□ 0.02
TRIM28-203ENST00000593582 NRROSQ86YC3 692 aa15.17■□□□□ 0.02
TRIM28-203ENST00000593582 GALNT13Q8IUC8 556 aa15.17■□□□□ 0.02
TRIM28-203ENST00000593582 CCNJLQ8IV13 435 aa15.17■□□□□ 0.02
TRIM28-203ENST00000593582 SFTPA2Q8IWL1 248 aa15.17■□□□□ 0.02
TRIM28-203ENST00000593582 Q8N9G6 341 aaPredicted RBP15.17■□□□□ 0.02
TRIM28-203ENST00000593582 SNIP1Q8TAD8 396 aaKnown RBP15.17■□□□□ 0.02
TRIM28-203ENST00000593582 ZDHHC1Q8WTX9 485 aa15.17■□□□□ 0.02
TRIM28-203ENST00000593582 ZNF578Q96N58 590 aaPredicted RBP15.17■□□□□ 0.02
TRIM28-203ENST00000593582 QKIQ96PU8 341 aaKnown RBP eCLIP15.17■□□□□ 0.02
TRIM28-203ENST00000593582 OR2M4Q96R27 311 aa15.17■□□□□ 0.02
TRIM28-203ENST00000593582 FERMT1Q9BQL6 677 aa15.17■□□□□ 0.02
TRIM28-203ENST00000593582 GPR63Q9BZJ6 419 aa15.17■□□□□ 0.02
TRIM28-203ENST00000593582 LRRN3Q9H3W5 708 aa15.17■□□□□ 0.02
TRIM28-203ENST00000593582 RAD18Q9NS91 495 aa15.17■□□□□ 0.02
TRIM28-203ENST00000593582 VPS18Q9P253 973 aa15.17■□□□□ 0.02
TRIM28-203ENST00000593582 FAM153AQ9UHL3 310 aa15.17■□□□□ 0.02
TRIM28-203ENST00000593582 SATB2Q9UPW6 733 aa15.17■□□□□ 0.02
TRIM28-203ENST00000593582 EFR3BQ9Y2G0 817 aa15.17■□□□□ 0.02
TRIM28-203ENST00000593582 ENTPD2Q9Y5L3 495 aa15.17■□□□□ 0.02
TRIM28-203ENST00000593582 RNF215Q9Y6U7 377 aa15.17■□□□□ 0.02
TRIM28-203ENST00000593582 ASXL3Q9C0F0 2248 aa15.17■□□□□ 0.02
TRIM28-203ENST00000593582 MACROD2A1Z1Q3 448 aa15.16■□□□□ 0.02
TRIM28-203ENST00000593582 D6RAR5 112 aa15.16■□□□□ 0.02
TRIM28-203ENST00000593582 TMX2-CTNND1H3BSU7 103 aa15.16■□□□□ 0.02
TRIM28-203ENST00000593582 CASC3O15234 703 aaKnown RBP15.16■□□□□ 0.02
TRIM28-203ENST00000593582 PJA2O43164 708 aa15.16■□□□□ 0.02
TRIM28-203ENST00000593582 TLX3O43711 291 aaPredicted RBP15.16■□□□□ 0.02
TRIM28-203ENST00000593582 DXOO77932 396 aaKnown RBP15.16■□□□□ 0.02
TRIM28-203ENST00000593582 SLC4A1P02730 911 aa15.16■□□□□ 0.02
TRIM28-203ENST00000593582 NFKB1P19838 968 aa15.16■□□□□ 0.02
TRIM28-203ENST00000593582 CTNNA2P26232 953 aa15.16■□□□□ 0.02
TRIM28-203ENST00000593582 CD68P34810 354 aaPredicted RBP15.16■□□□□ 0.02
TRIM28-203ENST00000593582 EIF2S3P41091 472 aaKnown RBP15.16■□□□□ 0.02
TRIM28-203ENST00000593582 ACTR1BP42025 376 aa15.16■□□□□ 0.02
TRIM28-203ENST00000593582 RWDD2BP57060 319 aa15.16■□□□□ 0.02
TRIM28-203ENST00000593582 ACTR1AP61163 376 aa15.16■□□□□ 0.02
TRIM28-203ENST00000593582 XRCC4Q13426 336 aa15.16■□□□□ 0.02
TRIM28-203ENST00000593582 BIRC2Q13490 618 aa15.16■□□□□ 0.02
TRIM28-203ENST00000593582 LRP8Q14114 963 aa15.16■□□□□ 0.02
TRIM28-203ENST00000593582 COL28A1Q2UY09 1125 aa15.16■□□□□ 0.02
TRIM28-203ENST00000593582 PYCR3Q53H96 274 aa15.16■□□□□ 0.02
TRIM28-203ENST00000593582 C3orf38Q5JPI3 329 aa15.16■□□□□ 0.02
TRIM28-203ENST00000593582 PID1Q7Z2X4 250 aa15.16■□□□□ 0.02
TRIM28-203ENST00000593582 SPC24Q8NBT2 197 aa15.16■□□□□ 0.02
TRIM28-203ENST00000593582 EID2BQ96D98 161 aa15.16■□□□□ 0.02
TRIM28-203ENST00000593582 WDR24Q96S15 920 aa15.16■□□□□ 0.02
TRIM28-203ENST00000593582 ZSCAN5AQ9BUG6 496 aa15.16■□□□□ 0.02
TRIM28-203ENST00000593582 SPATA16Q9BXB7 569 aa15.16■□□□□ 0.02
TRIM28-203ENST00000593582 ZNHIT2Q9UHR6 403 aa15.16■□□□□ 0.02
TRIM28-203ENST00000593582 TRHDEQ9UKU6 1024 aa15.16■□□□□ 0.02
TRIM28-203ENST00000593582 CNOT6Q9ULM6 557 aaKnown RBP15.16■□□□□ 0.02
TRIM28-203ENST00000593582 ZNF711Q9Y462 761 aa15.16■□□□□ 0.02
TRIM28-203ENST00000593582 URB1O60287 2271 aaKnown RBP15.16■□□□□ 0.02
TRIM28-203ENST00000593582 A0A1W2PQM1 296 aa15.15■□□□□ 0.02
TRIM28-203ENST00000593582 RHPN2P1A8MT19 583 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms