RNA–Protein interactions for RNA: ENST00000582792.5

SS18-222, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 5

Gene SS18, Length 531 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-222	ENST00000582792	GOLGA6D	P0CG33	693 aa		13.5	□□□□□ -0.25
SS18-222	ENST00000582792	CYP2A6	P11509	494 aa	Predicted RBP	13.5	□□□□□ -0.25
SS18-222	ENST00000582792	CR2	P20023	1033 aa		13.5	□□□□□ -0.25
SS18-222	ENST00000582792	HSPA9	P38646	679 aa	Known RBP	13.5	□□□□□ -0.25
SS18-222	ENST00000582792	FASLG	P48023	281 aa		13.5	□□□□□ -0.25
SS18-222	ENST00000582792	DPT	Q07507	201 aa		13.5	□□□□□ -0.25
SS18-222	ENST00000582792	MAMLD1	Q13495	774 aa		13.5	□□□□□ -0.25
SS18-222	ENST00000582792	ZNF235	Q14590	738 aa		13.5	□□□□□ -0.25
SS18-222	ENST00000582792	IGFBP7	Q16270	282 aa		13.5	□□□□□ -0.25
SS18-222	ENST00000582792	PPP6R3	Q5H9R7	873 aa	Predicted RBP	13.5	□□□□□ -0.25
SS18-222	ENST00000582792	ANKS6	Q68DC2	871 aa		13.5	□□□□□ -0.25
SS18-222	ENST00000582792	DOK6	Q6PKX4	331 aa		13.5	□□□□□ -0.25
SS18-222	ENST00000582792	CLEC18B	Q6UXF7	455 aa		13.5	□□□□□ -0.25
SS18-222	ENST00000582792		Q6ZVL8	140 aa		13.5	□□□□□ -0.25
SS18-222	ENST00000582792	CYP4V2	Q6ZWL3	525 aa	Predicted RBP	13.5	□□□□□ -0.25
SS18-222	ENST00000582792	ZNF571	Q7Z3V5	609 aa	Predicted RBP	13.5	□□□□□ -0.25
SS18-222	ENST00000582792	TP53INP2	Q8IXH6	220 aa		13.5	□□□□□ -0.25
SS18-222	ENST00000582792	NRSN1	Q8IZ57	195 aa		13.5	□□□□□ -0.25
SS18-222	ENST00000582792	LZTR1	Q8N653	840 aa		13.5	□□□□□ -0.25
SS18-222	ENST00000582792	CLEC18C	Q8NCF0	446 aa		13.5	□□□□□ -0.25
SS18-222	ENST00000582792	C9orf43	Q8TAL5	461 aa	Predicted RBP	13.5	□□□□□ -0.25
SS18-222	ENST00000582792	KIAA1143	Q96AT1	154 aa	Predicted RBP	13.5	□□□□□ -0.25
SS18-222	ENST00000582792	SCRN2	Q96FV2	425 aa		13.5	□□□□□ -0.25
SS18-222	ENST00000582792	OR2M4	Q96R27	311 aa		13.5	□□□□□ -0.25
SS18-222	ENST00000582792	NUDCD1	Q96RS6	583 aa		13.5	□□□□□ -0.25
SS18-222	ENST00000582792	SPRY4	Q9C004	299 aa		13.5	□□□□□ -0.25
SS18-222	ENST00000582792	GPN2	Q9H9Y4	310 aa	Predicted RBP	13.5	□□□□□ -0.25
SS18-222	ENST00000582792	ZNHIT6	Q9NWK9	470 aa	Known RBP	13.5	□□□□□ -0.25
SS18-222	ENST00000582792	GOLGA6A	Q9NYA3	693 aa		13.5	□□□□□ -0.25
SS18-222	ENST00000582792	PCSK1N	Q9UHG2	260 aa		13.5	□□□□□ -0.25
SS18-222	ENST00000582792	USP9X	Q93008	2570 aa	Predicted RBP	13.5	□□□□□ -0.25
SS18-222	ENST00000582792	SSU72P8	A0A1W2PR75	194 aa		13.49	□□□□□ -0.25
SS18-222	ENST00000582792	DUX1	O43812	170 aa		13.49	□□□□□ -0.25
SS18-222	ENST00000582792	PEX11B	O96011	259 aa		13.49	□□□□□ -0.25
SS18-222	ENST00000582792	SOD1	P00441	154 aa		13.49	□□□□□ -0.25
SS18-222	ENST00000582792	PRKAR1A	P10644	381 aa		13.49	□□□□□ -0.25
SS18-222	ENST00000582792	GP1BB	P13224	206 aa		13.49	□□□□□ -0.25
SS18-222	ENST00000582792	MAP4	P27816	1152 aa	Known RBP	13.49	□□□□□ -0.25
SS18-222	ENST00000582792	GPR1	P46091	355 aa		13.49	□□□□□ -0.25
SS18-222	ENST00000582792	HCAR3	P49019	387 aa		13.49	□□□□□ -0.25
SS18-222	ENST00000582792	ZNF135	P52742	658 aa	Predicted RBP	13.49	□□□□□ -0.25
SS18-222	ENST00000582792	MC2R	Q01718	297 aa		13.49	□□□□□ -0.25
SS18-222	ENST00000582792	CDC20	Q12834	499 aa		13.49	□□□□□ -0.25
SS18-222	ENST00000582792	TRAF2	Q12933	501 aa		13.49	□□□□□ -0.25
SS18-222	ENST00000582792	DPYS	Q14117	519 aa		13.49	□□□□□ -0.25
SS18-222	ENST00000582792	TECPR1	Q7Z6L1	1165 aa		13.49	□□□□□ -0.25
SS18-222	ENST00000582792	TSPAN33	Q86UF1	283 aa		13.49	□□□□□ -0.25
SS18-222	ENST00000582792	LURAP1L	Q8IV03	231 aa		13.49	□□□□□ -0.25
SS18-222	ENST00000582792	PSTK	Q8IV42	348 aa	Known RBP	13.49	□□□□□ -0.25
SS18-222	ENST00000582792	NLGN4X	Q8N0W4	816 aa		13.49	□□□□□ -0.25
SS18-222	ENST00000582792	PGBD5	Q8N414	524 aa		13.49	□□□□□ -0.25
SS18-222	ENST00000582792	NLGN4Y	Q8NFZ3	816 aa	Predicted RBP	13.49	□□□□□ -0.25
SS18-222	ENST00000582792	OR10G6	Q8NH81	332 aa		13.49	□□□□□ -0.25
SS18-222	ENST00000582792	SLC37A2	Q8TED4	501 aa		13.49	□□□□□ -0.25
SS18-222	ENST00000582792	RTP4	Q96DX8	246 aa		13.49	□□□□□ -0.25
SS18-222	ENST00000582792	AHCYL2	Q96HN2	611 aa	Known RBP	13.49	□□□□□ -0.25
SS18-222	ENST00000582792	MCCC1	Q96RQ3	725 aa	Predicted RBP	13.49	□□□□□ -0.25
SS18-222	ENST00000582792	MGME1	Q9BQP7	344 aa		13.49	□□□□□ -0.25
SS18-222	ENST00000582792	EFHD1	Q9BUP0	239 aa		13.49	□□□□□ -0.25
SS18-222	ENST00000582792	ZMYND15	Q9H091	742 aa		13.49	□□□□□ -0.25
SS18-222	ENST00000582792	NOD2	Q9HC29	1040 aa		13.49	□□□□□ -0.25
SS18-222	ENST00000582792	ZNF71	Q9NQZ8	489 aa	Predicted RBP	13.49	□□□□□ -0.25
SS18-222	ENST00000582792	ABHD10	Q9NUJ1	306 aa		13.49	□□□□□ -0.25
SS18-222	ENST00000582792	PARVA	Q9NVD7	372 aa		13.49	□□□□□ -0.25
SS18-222	ENST00000582792	TAS2R14	Q9NYV8	317 aa		13.49	□□□□□ -0.25
SS18-222	ENST00000582792	CWC15	Q9P013	229 aa	Known RBP	13.49	□□□□□ -0.25
SS18-222	ENST00000582792	IMPACT	Q9P2X3	320 aa		13.49	□□□□□ -0.25
SS18-222	ENST00000582792	PPIL1	Q9Y3C6	166 aa		13.49	□□□□□ -0.25
SS18-222	ENST00000582792	LOC101059948	A0A1B0GTJ6	334 aa		13.48	□□□□□ -0.25
SS18-222	ENST00000582792	GOLGA6L3	A6NEY3	463 aa		13.48	□□□□□ -0.25
SS18-222	ENST00000582792	PRPSAP2	O60256	369 aa		13.48	□□□□□ -0.25
SS18-222	ENST00000582792	RNF8	O76064	485 aa		13.48	□□□□□ -0.25
SS18-222	ENST00000582792	PGLS	O95336	258 aa		13.48	□□□□□ -0.25
SS18-222	ENST00000582792	MIP	P30301	263 aa		13.48	□□□□□ -0.25
SS18-222	ENST00000582792	MAN1A1	P33908	653 aa		13.48	□□□□□ -0.25
SS18-222	ENST00000582792	LRP8	Q14114	963 aa		13.48	□□□□□ -0.25
SS18-222	ENST00000582792	PTPRR	Q15256	657 aa		13.48	□□□□□ -0.25
SS18-222	ENST00000582792	PYCR3	Q53H96	274 aa		13.48	□□□□□ -0.25
SS18-222	ENST00000582792	RALGPS1	Q5JS13	557 aa		13.48	□□□□□ -0.25
SS18-222	ENST00000582792	CHCHD2P9	Q5T1J5	151 aa	Predicted RBP	13.48	□□□□□ -0.25
SS18-222	ENST00000582792	PLEKHA7	Q6IQ23	1121 aa		13.48	□□□□□ -0.25
SS18-222	ENST00000582792	WDR74	Q6RFH5	385 aa	Predicted RBP	13.48	□□□□□ -0.25
SS18-222	ENST00000582792	CEACAM20	Q6UY09	585 aa		13.48	□□□□□ -0.25
SS18-222	ENST00000582792	ADAMTSL4	Q6UY14	1074 aa		13.48	□□□□□ -0.25
SS18-222	ENST00000582792	USP45	Q70EL2	814 aa		13.48	□□□□□ -0.25
SS18-222	ENST00000582792	TIPARP	Q7Z3E1	657 aa	Known RBP	13.48	□□□□□ -0.25
SS18-222	ENST00000582792	ARHGAP22	Q7Z5H3	698 aa		13.48	□□□□□ -0.25
SS18-222	ENST00000582792	ZNF761	Q86XN6	746 aa	Predicted RBP	13.48	□□□□□ -0.25
SS18-222	ENST00000582792	SFRP1	Q8N474	314 aa		13.48	□□□□□ -0.25
SS18-222	ENST00000582792	APOBEC4	Q8WW27	367 aa	Known RBP	13.48	□□□□□ -0.25
SS18-222	ENST00000582792	SLC38A3	Q99624	504 aa		13.48	□□□□□ -0.25
SS18-222	ENST00000582792	ZPBP	Q9BS86	351 aa		13.48	□□□□□ -0.25
SS18-222	ENST00000582792	FBXO8	Q9NRD0	319 aa		13.48	□□□□□ -0.25
SS18-222	ENST00000582792	TMEM98	Q9Y2Y6	226 aa		13.48	□□□□□ -0.25
SS18-222	ENST00000582792	TRBV23OR9-2	A0A075B6M9	112 aa		13.47	□□□□□ -0.25
SS18-222	ENST00000582792	TMEM191C	A6NGB0	347 aa		13.47	□□□□□ -0.25
SS18-222	ENST00000582792		A8MU76	341 aa		13.47	□□□□□ -0.25
SS18-222	ENST00000582792	DDX3X	O00571	662 aa	Known RBP eCLIP	13.47	□□□□□ -0.25	1e-15	■■■□□ 17.7
SS18-222	ENST00000582792	ATMIN	O43313	823 aa	Predicted RBP	13.47	□□□□□ -0.25
SS18-222	ENST00000582792	MAP3K6	O95382	1288 aa		13.47	□□□□□ -0.25

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