RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 GCN1Q92616 2671 aaKnown RBP20.38■□□□□ 0.85
SHMT1-209ENST00000582653 ZW10O43264 779 aa20.37■□□□□ 0.85
SHMT1-209ENST00000582653 CPNE6O95741 557 aa20.37■□□□□ 0.85
SHMT1-209ENST00000582653 IVLP07476 585 aa20.37■□□□□ 0.85
SHMT1-209ENST00000582653 MMP2P08253 660 aa20.37■□□□□ 0.85
SHMT1-209ENST00000582653 TNNT1P13805 278 aa20.37■□□□□ 0.85
SHMT1-209ENST00000582653 CD86P42081 329 aa20.37■□□□□ 0.85
SHMT1-209ENST00000582653 STC1P52823 247 aa20.37■□□□□ 0.85
SHMT1-209ENST00000582653 CTBSQ01459 385 aa20.37■□□□□ 0.85
SHMT1-209ENST00000582653 ZBTB17Q13105 803 aa20.37■□□□□ 0.85
SHMT1-209ENST00000582653 NR1D2Q14995 579 aa20.37■□□□□ 0.85
SHMT1-209ENST00000582653 CLPPQ16740 277 aaPredicted RBP20.37■□□□□ 0.85
SHMT1-209ENST00000582653 SLC30A9Q6PML9 568 aa20.37■□□□□ 0.85
SHMT1-209ENST00000582653 NPNTQ6UXI9 565 aa20.37■□□□□ 0.85
SHMT1-209ENST00000582653 B4GALNT4Q76KP1 1039 aa20.37■□□□□ 0.85
SHMT1-209ENST00000582653 TMPRSS9Q7Z410 1059 aa20.37■□□□□ 0.85
SHMT1-209ENST00000582653 JAMLQ86YT9 394 aa20.37■□□□□ 0.85
SHMT1-209ENST00000582653 SLITRK4Q8IW52 837 aa20.37■□□□□ 0.85
SHMT1-209ENST00000582653 RNF25Q96BH1 459 aaPredicted RBP20.37■□□□□ 0.85
SHMT1-209ENST00000582653 RIOK2Q9BVS4 552 aaKnown RBP20.37■□□□□ 0.85
SHMT1-209ENST00000582653 PISDQ9UG56 409 aa20.37■□□□□ 0.85
SHMT1-209ENST00000582653 UNC13CQ8NB66 2214 aa20.37■□□□□ 0.85
SHMT1-209ENST00000582653 RHPN2P1A8MT19 583 aa20.36■□□□□ 0.85
SHMT1-209ENST00000582653 INPP4BO15327 924 aa20.36■□□□□ 0.85
SHMT1-209ENST00000582653 ECEL1O95672 775 aa20.36■□□□□ 0.85
SHMT1-209ENST00000582653 ZNF30P17039 623 aa20.36■□□□□ 0.85
SHMT1-209ENST00000582653 ALDH4A1P30038 563 aa20.36■□□□□ 0.85
SHMT1-209ENST00000582653 ADCY8P40145 1251 aa20.36■□□□□ 0.85
SHMT1-209ENST00000582653 ARHGAP25P42331 645 aa20.36■□□□□ 0.85
SHMT1-209ENST00000582653 OR1D5P58170 312 aa20.36■□□□□ 0.85
SHMT1-209ENST00000582653 PPIDQ08752 370 aaKnown RBP20.36■□□□□ 0.85
SHMT1-209ENST00000582653 ADAMTSL4Q6UY14 1074 aa20.36■□□□□ 0.85
SHMT1-209ENST00000582653 MARK2Q7KZI7 788 aaKnown RBP20.36■□□□□ 0.85
SHMT1-209ENST00000582653 ZNF438Q7Z4V0 828 aa20.36■□□□□ 0.85
SHMT1-209ENST00000582653 RAVER1Q8IY67 606 aaKnown RBP20.36■□□□□ 0.85
SHMT1-209ENST00000582653 TRAF3IP1Q8TDR0 691 aaPredicted RBP20.36■□□□□ 0.85
SHMT1-209ENST00000582653 PATE1Q8WXA2 126 aa20.36■□□□□ 0.85
SHMT1-209ENST00000582653 ZNF830Q96NB3 372 aaPredicted RBP20.36■□□□□ 0.85
SHMT1-209ENST00000582653 SEMA6CQ9H3T2 930 aa20.36■□□□□ 0.85
SHMT1-209ENST00000582653 HAUS2Q9NVX0 235 aa20.36■□□□□ 0.85
SHMT1-209ENST00000582653 APOL1O14791 398 aa20.35■□□□□ 0.85
SHMT1-209ENST00000582653 MTA2O94776 668 aa20.35■□□□□ 0.85
SHMT1-209ENST00000582653 KRT1P04264 644 aa20.35■□□□□ 0.85
SHMT1-209ENST00000582653 PYGLP06737 847 aa20.35■□□□□ 0.85
SHMT1-209ENST00000582653 ITIH1P19827 911 aa20.35■□□□□ 0.85
SHMT1-209ENST00000582653 GPR3P46089 330 aa20.35■□□□□ 0.85
SHMT1-209ENST00000582653 AP1B1Q10567 949 aa20.35■□□□□ 0.85
SHMT1-209ENST00000582653 QPCTQ16769 361 aa20.35■□□□□ 0.85
SHMT1-209ENST00000582653 SLC9A4Q6AI14 798 aa20.35■□□□□ 0.85
SHMT1-209ENST00000582653 ZNF765Q7L2R6 523 aa20.35■□□□□ 0.85
SHMT1-209ENST00000582653 RHOT2Q8IXI1 618 aa20.35■□□□□ 0.85
SHMT1-209ENST00000582653 NAGSQ8N159 534 aa20.35■□□□□ 0.85
SHMT1-209ENST00000582653 WDR24Q96S15 920 aa20.35■□□□□ 0.85
SHMT1-209ENST00000582653 MAK16Q9BXY0 300 aaKnown RBP20.35■□□□□ 0.85
SHMT1-209ENST00000582653 B3GNT4Q9C0J1 378 aa20.35■□□□□ 0.85
SHMT1-209ENST00000582653 RDH14Q9HBH5 336 aa20.35■□□□□ 0.85
SHMT1-209ENST00000582653 C1orf232A0A0U1RR37 186 aa20.34■□□□□ 0.85
SHMT1-209ENST00000582653 AKR1B15C9JRZ8 316 aaPredicted RBP20.34■□□□□ 0.85
SHMT1-209ENST00000582653 LIPCP11150 499 aa20.34■□□□□ 0.85
SHMT1-209ENST00000582653 PLA2G2AP14555 144 aa20.34■□□□□ 0.85
SHMT1-209ENST00000582653 CA4P22748 312 aa20.34■□□□□ 0.85
SHMT1-209ENST00000582653 CD1CP29017 333 aa20.34■□□□□ 0.85
SHMT1-209ENST00000582653 RPL26P61254 145 aaKnown RBP20.34■□□□□ 0.85
SHMT1-209ENST00000582653 DYNLT1P63172 113 aa20.34■□□□□ 0.85
SHMT1-209ENST00000582653 IFI35P80217 286 aaPredicted RBP20.34■□□□□ 0.85
SHMT1-209ENST00000582653 TBX2Q13207 712 aaPredicted RBP20.34■□□□□ 0.85
SHMT1-209ENST00000582653 SQSTM1Q13501 440 aa20.34■□□□□ 0.85
SHMT1-209ENST00000582653 LY6DQ14210 128 aa20.34■□□□□ 0.85
SHMT1-209ENST00000582653 TGIF1Q15583 401 aa20.34■□□□□ 0.85
SHMT1-209ENST00000582653 AMZ1Q400G9 498 aa20.34■□□□□ 0.85
SHMT1-209ENST00000582653 PHF19Q5T6S3 580 aa20.34■□□□□ 0.85
SHMT1-209ENST00000582653 KIAA1614Q5VZ46 1190 aa20.34■□□□□ 0.85
SHMT1-209ENST00000582653 ZNF574Q6ZN55 896 aaPredicted RBP20.34■□□□□ 0.85
SHMT1-209ENST00000582653 USP53Q70EK8 1073 aa20.34■□□□□ 0.85
SHMT1-209ENST00000582653 KDELC2Q7Z4H8 507 aa20.34■□□□□ 0.85
SHMT1-209ENST00000582653 RFX6Q8HWS3 928 aa20.34■□□□□ 0.85
SHMT1-209ENST00000582653 NRSN1Q8IZ57 195 aa20.34■□□□□ 0.85
SHMT1-209ENST00000582653 EXD1Q8NHP7 514 aa20.34■□□□□ 0.85
SHMT1-209ENST00000582653 SEPT10Q9P0V9 454 aa20.34■□□□□ 0.85
SHMT1-209ENST00000582653 RPL26L1Q9UNX3 145 aaKnown RBP20.34■□□□□ 0.85
SHMT1-209ENST00000582653 ZNF487B1APH4 448 aa20.33■□□□□ 0.85
SHMT1-209ENST00000582653 ANKRD66B4E2M5 251 aa20.33■□□□□ 0.85
SHMT1-209ENST00000582653 PPM1DO15297 605 aa20.33■□□□□ 0.85
SHMT1-209ENST00000582653 ASMTLO95671 621 aa20.33■□□□□ 0.85
SHMT1-209ENST00000582653 ATP1A1P05023 1023 aaKnown RBP20.33■□□□□ 0.85
SHMT1-209ENST00000582653 COMTP21964 271 aa20.33■□□□□ 0.85
SHMT1-209ENST00000582653 ETV5P41161 510 aa20.33■□□□□ 0.85
SHMT1-209ENST00000582653 GALNT3Q14435 633 aa20.33■□□□□ 0.85
SHMT1-209ENST00000582653 PYCR3Q53H96 274 aa20.33■□□□□ 0.85
SHMT1-209ENST00000582653 CNGA4Q8IV77 575 aa20.33■□□□□ 0.85
SHMT1-209ENST00000582653 USP7Q93009 1102 aa20.33■□□□□ 0.85
SHMT1-209ENST00000582653 MED8Q96G25 268 aa20.33■□□□□ 0.85
SHMT1-209ENST00000582653 COX14Q96I36 57 aa20.33■□□□□ 0.85
SHMT1-209ENST00000582653 AGAP3Q96P47 875 aa20.33■□□□□ 0.85
SHMT1-209ENST00000582653 OR2M4Q96R27 311 aa20.33■□□□□ 0.85
SHMT1-209ENST00000582653 LYSMD1Q96S90 227 aa20.33■□□□□ 0.85
SHMT1-209ENST00000582653 MLPHQ9BV36 600 aaPredicted RBP20.33■□□□□ 0.85
SHMT1-209ENST00000582653 SEMA4CQ9C0C4 833 aa20.33■□□□□ 0.85
SHMT1-209ENST00000582653 CDH19Q9H159 772 aa20.33■□□□□ 0.85
SHMT1-209ENST00000582653 AKAP7Q9P0M2 348 aaPredicted RBP20.33■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms