RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 UCMAQ8WVF2 138 aa6.22□□□□□ -1.41
SS18-214ENST00000580003 ARHGEF26Q96DR7 871 aa6.22□□□□□ -1.41
SS18-214ENST00000580003 GRAMD2BQ96HH9 432 aa6.22□□□□□ -1.41
SS18-214ENST00000580003 QRFPRQ96P65 431 aa6.22□□□□□ -1.41
SS18-214ENST00000580003 SEBOXQ9HB31 216 aaPredicted RBP6.22□□□□□ -1.41
SS18-214ENST00000580003 RANGRFQ9HD47 186 aaPredicted RBP6.22□□□□□ -1.41
SS18-214ENST00000580003 LTB4R2Q9NPC1 389 aa6.22□□□□□ -1.41
SS18-214ENST00000580003 TMEM30AQ9NV96 361 aa6.22□□□□□ -1.41
SS18-214ENST00000580003 EHD2Q9NZN4 543 aa6.22□□□□□ -1.41
SS18-214ENST00000580003 DOCK7Q96N67 2140 aa6.22□□□□□ -1.41
SS18-214ENST00000580003 FAM237BA0A1B0GVD1 139 aa6.21□□□□□ -1.42
SS18-214ENST00000580003 HS3ST1O14792 307 aa6.21□□□□□ -1.42
SS18-214ENST00000580003 MBD4O95243 580 aa6.21□□□□□ -1.42
SS18-214ENST00000580003 MLYCDO95822 493 aa6.21□□□□□ -1.42
SS18-214ENST00000580003 CDH1P12830 882 aa6.21□□□□□ -1.42
SS18-214ENST00000580003 UBA1P22314 1058 aaKnown RBP6.21□□□□□ -1.42
SS18-214ENST00000580003 NFKBIAP25963 317 aa6.21□□□□□ -1.42
SS18-214ENST00000580003 CORO1AP31146 461 aaKnown RBP6.21□□□□□ -1.42
SS18-214ENST00000580003 FUT6P51993 359 aa6.21□□□□□ -1.42
SS18-214ENST00000580003 TAS2R38P59533 333 aa6.21□□□□□ -1.42
SS18-214ENST00000580003 CEBPZQ03701 1054 aaKnown RBP6.21□□□□□ -1.42
SS18-214ENST00000580003 MAD2L1Q13257 205 aaPredicted RBP6.21□□□□□ -1.42
SS18-214ENST00000580003 CYP20A1Q6UW02 462 aa6.21□□□□□ -1.42
SS18-214ENST00000580003 GFRALQ6UXV0 394 aa6.21□□□□□ -1.42
SS18-214ENST00000580003 GDPD4Q6W3E5 623 aa6.21□□□□□ -1.42
SS18-214ENST00000580003 DSTYKQ6XUX3 929 aa6.21□□□□□ -1.42
SS18-214ENST00000580003 Q6ZTC4 211 aa6.21□□□□□ -1.42
SS18-214ENST00000580003 FOXL2NBQ6ZUU3 175 aa6.21□□□□□ -1.42
SS18-214ENST00000580003 GPR180Q86V85 440 aa6.21□□□□□ -1.42
SS18-214ENST00000580003 TMEM219Q86XT9 240 aa6.21□□□□□ -1.42
SS18-214ENST00000580003 KMT5CQ86Y97 462 aa6.21□□□□□ -1.42
SS18-214ENST00000580003 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP6.21□□□□□ -1.42
SS18-214ENST00000580003 C1orf87Q8N0U7 546 aa6.21□□□□□ -1.42
SS18-214ENST00000580003 BEST3Q8N1M1 668 aa6.21□□□□□ -1.42
SS18-214ENST00000580003 APBB2Q92870 758 aa6.21□□□□□ -1.42
SS18-214ENST00000580003 PPP1R13BQ96KQ4 1090 aa6.21□□□□□ -1.42
SS18-214ENST00000580003 PLEKHA5Q9HAU0 1116 aa6.21□□□□□ -1.42
SS18-214ENST00000580003 DIAPH3Q9NSV4 1193 aa6.21□□□□□ -1.42
SS18-214ENST00000580003 TXLNGQ9NUQ3 528 aa6.21□□□□□ -1.42
SS18-214ENST00000580003 ACSL5Q9ULC5 683 aa6.21□□□□□ -1.42
SS18-214ENST00000580003 SCN5AQ14524 2016 aa6.21□□□□□ -1.42
SS18-214ENST00000580003 LILRA5A6NI73 299 aa6.2□□□□□ -1.42
SS18-214ENST00000580003 BMPR1BO00238 502 aa6.2□□□□□ -1.42
SS18-214ENST00000580003 JRKO75564 520 aa6.2□□□□□ -1.42
SS18-214ENST00000580003 CETPP11597 493 aa6.2□□□□□ -1.42
SS18-214ENST00000580003 ZBED6P86452 979 aa6.2□□□□□ -1.42
SS18-214ENST00000580003 CDONQ4KMG0 1287 aa6.2□□□□□ -1.42
SS18-214ENST00000580003 ZNF280DQ6N043 979 aa6.2□□□□□ -1.42
SS18-214ENST00000580003 TTI2Q6NXR4 508 aa6.2□□□□□ -1.42
SS18-214ENST00000580003 BRAT1Q6PJG6 821 aa6.2□□□□□ -1.42
SS18-214ENST00000580003 CERS3Q8IU89 383 aa6.2□□□□□ -1.42
SS18-214ENST00000580003 SRBD1Q8N5C6 995 aaKnown RBP6.2□□□□□ -1.42
SS18-214ENST00000580003 LMNTD1Q8N9Z9 388 aa6.2□□□□□ -1.42
SS18-214ENST00000580003 BBS10Q8TAM1 723 aa6.2□□□□□ -1.42
SS18-214ENST00000580003 SGCDQ92629 289 aa6.2□□□□□ -1.42
SS18-214ENST00000580003 TAAR8Q969N4 342 aa6.2□□□□□ -1.42
SS18-214ENST00000580003 PERPQ96FX8 193 aa6.2□□□□□ -1.42
SS18-214ENST00000580003 NAP1L4Q99733 375 aaKnown RBP6.2□□□□□ -1.42
SS18-214ENST00000580003 CSTL1Q9H114 145 aa6.2□□□□□ -1.42
SS18-214ENST00000580003 RRP7BPQ9NSQ0 103 aa6.2□□□□□ -1.42
SS18-214ENST00000580003 OLA1Q9NTK5 396 aaKnown RBP6.2□□□□□ -1.42
SS18-214ENST00000580003 ORC3Q9UBD5 711 aaPredicted RBP6.2□□□□□ -1.42
SS18-214ENST00000580003 AASSQ9UDR5 926 aa6.2□□□□□ -1.42
SS18-214ENST00000580003 NOTCH4Q99466 2003 aa6.2□□□□□ -1.42
SS18-214ENST00000580003 C1orf226A1L170 272 aa6.19□□□□□ -1.42
SS18-214ENST00000580003 M0QZ24 198 aa6.19□□□□□ -1.42
SS18-214ENST00000580003 NDUFS3O75489 264 aa6.19□□□□□ -1.42
SS18-214ENST00000580003 IGLV2-11P01706 119 aa6.19□□□□□ -1.42
SS18-214ENST00000580003 CD4P01730 458 aa6.19□□□□□ -1.42
SS18-214ENST00000580003 HLA-DOBP13765 273 aa6.19□□□□□ -1.42
SS18-214ENST00000580003 MYOD1P15172 320 aa6.19□□□□□ -1.42
SS18-214ENST00000580003 ITGA2P17301 1181 aa6.19□□□□□ -1.42
SS18-214ENST00000580003 CHMP24386 653 aa6.19□□□□□ -1.42
SS18-214ENST00000580003 MAN1A1P33908 653 aa6.19□□□□□ -1.42
SS18-214ENST00000580003 EEF1A1P68104 462 aaKnown RBP6.19□□□□□ -1.42
SS18-214ENST00000580003 DECR1Q16698 335 aa6.19□□□□□ -1.42
SS18-214ENST00000580003 ACCSLQ4AC99 568 aa6.19□□□□□ -1.42
SS18-214ENST00000580003 EEF1A1P5Q5VTE0 462 aa6.19□□□□□ -1.42
SS18-214ENST00000580003 FAAH2Q6GMR7 532 aa6.19□□□□□ -1.42
SS18-214ENST00000580003 ZNF771Q7L3S4 317 aaPredicted RBP6.19□□□□□ -1.42
SS18-214ENST00000580003 PDILTQ8N807 584 aa6.19□□□□□ -1.42
SS18-214ENST00000580003 HMGCLL1Q8TB92 370 aa6.19□□□□□ -1.42
SS18-214ENST00000580003 DNAAF4Q8WXU2 420 aa6.19□□□□□ -1.42
SS18-214ENST00000580003 ARHGEF2Q92974 986 aaKnown RBP6.19□□□□□ -1.42
SS18-214ENST00000580003 PIGTQ969N2 578 aa6.19□□□□□ -1.42
SS18-214ENST00000580003 RHBDF1Q96CC6 855 aa6.19□□□□□ -1.42
SS18-214ENST00000580003 MPP4Q96JB8 637 aa6.19□□□□□ -1.42
SS18-214ENST00000580003 POLR1BQ9H9Y6 1135 aa6.19□□□□□ -1.42
SS18-214ENST00000580003 ABCF3Q9NUQ8 709 aa6.19□□□□□ -1.42
SS18-214ENST00000580003 OR14J1Q9UGF5 321 aa6.19□□□□□ -1.42
SS18-214ENST00000580003 FBXL2Q9UKC9 423 aa6.19□□□□□ -1.42
SS18-214ENST00000580003 RALYQ9UKM9 306 aaKnown RBP6.19□□□□□ -1.42
SS18-214ENST00000580003 PTPRCP08575 1304 aa6.19□□□□□ -1.42
SS18-214ENST00000580003 A0A1W2PQF6 199 aa6.18□□□□□ -1.42
SS18-214ENST00000580003 A0A1W2PS18 150 aa6.18□□□□□ -1.42
SS18-214ENST00000580003 ASPDHA6ND91 283 aa6.18□□□□□ -1.42
SS18-214ENST00000580003 C16orf97H3BN30 126 aa6.18□□□□□ -1.42
SS18-214ENST00000580003 IGKV3-20P01619 116 aa6.18□□□□□ -1.42
SS18-214ENST00000580003 ATP1A1P05023 1023 aaKnown RBP6.18□□□□□ -1.42
SS18-214ENST00000580003 EIF2S1P05198 315 aaKnown RBP6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms