RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 TRIM23P36406 574 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 RWDD2BP57060 319 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 GSDMDP57764 484 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 DPTQ07507 201 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 NIPAL4Q0D2K0 466 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 BIRC2Q13490 618 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 PEX6Q13608 980 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 LLGL1Q15334 1064 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 TCEA2Q15560 299 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 SLC14A2Q15849 920 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 PCSK7Q16549 785 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 TAZQ16635 292 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 CDKN3Q16667 212 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 COL28A1Q2UY09 1125 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 TEX44Q53QW1 395 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 CRTC1Q6UUV9 634 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 Q6ZVL8 140 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 ZNF765Q7L2R6 523 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 EFL1Q7Z2Z2 1120 aaKnown RBP8.08□□□□□ -1.12
VPS53-214ENST00000572607 TAF8Q7Z7C8 310 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 TSPAN33Q86UF1 283 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 ZC3H18Q86VM9 953 aaKnown RBP8.08□□□□□ -1.12
VPS53-214ENST00000572607 HEATR4Q86WZ0 1026 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 CDKL3Q8IVW4 592 aaPredicted RBP8.08□□□□□ -1.12
VPS53-214ENST00000572607 NRSN1Q8IZ57 195 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 UBL4BQ8N7F7 174 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 ARL10Q8N8L6 244 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 OR6C4Q8NGE1 309 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 HAUS1Q96CS2 278 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 IMP4Q96G21 291 aaKnown RBP8.08□□□□□ -1.12
VPS53-214ENST00000572607 PDXPQ96GD0 296 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 DEPDC7Q96QD5 511 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 SRPK1Q96SB4 655 aaKnown RBP8.08□□□□□ -1.12
VPS53-214ENST00000572607 RBM15Q96T37 977 aaKnown RBP eCLIP8.08□□□□□ -1.12
VPS53-214ENST00000572607 VAT1Q99536 393 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 GSDMCQ9BYG8 508 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 CEP41Q9BYV8 373 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 SYNDIG1Q9H7V2 258 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 CARS2Q9HA77 564 aaKnown RBP8.08□□□□□ -1.12
VPS53-214ENST00000572607 CYP4F12Q9HCS2 524 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 RAD18Q9NS91 495 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 GULP1Q9UBP9 304 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 CD84Q9UIB8 345 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 AMFRQ9UKV5 643 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 MAP4K5Q9Y4K4 846 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 PCDHA3Q9Y5H8 950 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 DGKBQ9Y6T7 804 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 TRPM6Q9BX84 2022 aa8.08□□□□□ -1.12
VPS53-214ENST00000572607 URB1O60287 2271 aaKnown RBP8.08□□□□□ -1.12
VPS53-214ENST00000572607 PRSS38A1L453 326 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 RGSL1A5PLK6 1076 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 GOLGA6L9A6NEM1 432 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 TRABD2BA6NFA1 517 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 CYSRT1A8MQ03 144 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 ANKRD66B4E2M5 251 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 H7C0C1 242 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 APOC4-APOC2K7ER74 178 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 PJA2O43164 708 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 OPA1O60313 960 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 GCATO75600 419 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 TJP3O95049 919 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 CLDN7O95471 211 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 ASMTLO95671 621 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 MT-CO3P00414 261 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 APOC2P02655 101 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 BMP2P12643 396 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 PECAM1P16284 738 aaPredicted RBP8.07□□□□□ -1.12
VPS53-214ENST00000572607 GM2AP17900 193 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 PTPN3P26045 913 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 GNPDA1P46926 289 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 ATP5OP48047 213 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 MARCKSL1P49006 195 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 STC1P52823 247 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 CDK3Q00526 305 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 CDK18Q07002 472 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 ILF3Q12906 894 aaKnown RBP eCLIP8.07□□□□□ -1.12
VPS53-214ENST00000572607 TARDBPQ13148 414 aaKnown RBP eCLIP8.07□□□□□ -1.12
VPS53-214ENST00000572607 GALNT3Q14435 633 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 PRKD1Q15139 912 aaPredicted RBP8.07□□□□□ -1.12
VPS53-214ENST00000572607 QPCTQ16769 361 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 ITPRIPL1Q6GPH6 555 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 DOK6Q6PKX4 331 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 ADAMTSL4Q6UY14 1074 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 BBS12Q6ZW61 710 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 PEX26Q7Z412 305 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 TECPR1Q7Z6L1 1165 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 NLRP8Q86W28 1048 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 CACTIN-AS1Q8N1I8 211 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 LINC00528Q8N1L1 170 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 MEIOBQ8N635 442 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 CNTD1Q8N815 330 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 CCDC112Q8NEF3 446 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 WDR48Q8TAF3 677 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 HTR3CQ8WXA8 447 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 OR1E3Q8WZA6 343 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 KRT35Q92764 455 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 LRRC45Q96CN5 670 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 TEKT5Q96M29 485 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 QKIQ96PU8 341 aaKnown RBP eCLIP8.07□□□□□ -1.12
VPS53-214ENST00000572607 LYSMD1Q96S90 227 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms