RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 PHF19Q5T6S3 580 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 NKAIN2Q5VXU1 208 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 LRRC66Q68CR7 880 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 DENND2CQ68D51 928 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 NCBP2-AS2Q69YL0 99 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 RAET1GQ6H3X3 334 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 SLC30A9Q6PML9 568 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 TMCO3Q6UWJ1 677 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 ADAMTSL4Q6UY14 1074 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 TRIM74Q86UV6 250 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 NLRP8Q86W28 1048 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 TXLNBQ8N3L3 684 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 ATPAF2Q8N5M1 289 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 BMPERQ8N8U9 685 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 MNS1Q8NEH6 495 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 ARRDC2Q8TBH0 407 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 KIAA1524Q8TCG1 905 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 LRRN4Q8WUT4 740 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 TEKT4Q8WW24 435 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 ANKRD7Q92527 254 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 HSPH1Q92598 858 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 NKD1Q969G9 470 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 TMEM159Q96B96 161 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 CCDC74BQ96LY2 380 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 CMKLR1Q99788 373 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 SEMA3CQ99985 751 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 SLC12A9Q9BXP2 914 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 GSDMCQ9BYG8 508 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 THAP2Q9H0W7 228 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 SUDS3Q9H7L9 328 aaPredicted RBP6.69□□□□□ -1.34
VPS53-213ENST00000572334 NT5MQ9NPB1 228 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.69□□□□□ -1.34
VPS53-213ENST00000572334 PDP2Q9P2J9 529 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 CD84Q9UIB8 345 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 MOSPD1Q9UJG1 213 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 TMEM98Q9Y2Y6 226 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 OAS3Q9Y6K5 1087 aaKnown RBP6.69□□□□□ -1.34
VPS53-213ENST00000572334 SCINQ9Y6U3 715 aa6.69□□□□□ -1.34
VPS53-213ENST00000572334 USP9XQ93008 2570 aaPredicted RBP6.68□□□□□ -1.34
VPS53-213ENST00000572334 TNRC6AQ8NDV7 1962 aaKnown RBP6.68□□□□□ -1.34
VPS53-213ENST00000572334 CCDC88CQ9P219 2028 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 A0A087X0T9 212 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 A6NCN8 305 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 SMTNL1A8MU46 457 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 FADS2P1A8MWK0 482 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 PDE2AO00408 941 aaPredicted RBP6.68□□□□□ -1.34
VPS53-213ENST00000572334 TERTO14746 1132 aaKnown RBP6.68□□□□□ -1.34
VPS53-213ENST00000572334 HGSO14964 777 aaPredicted RBP6.68□□□□□ -1.34
VPS53-213ENST00000572334 CTIFO43310 598 aaKnown RBP6.68□□□□□ -1.34
VPS53-213ENST00000572334 NRDCO43847 1150 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 SLC28A2O43868 658 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 DNAJC6O75061 913 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 MAP3K6O95382 1288 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 ITGB2P05107 769 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 HLA-DQB2P05538 268 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 MMP2P08253 660 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 TPM1P09493 284 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 FAM87AP0C7U9 286 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 FAM228BP0C875 321 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 MYBL1P10243 752 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 CYP2A6P11509 494 aaPredicted RBP6.68□□□□□ -1.34
VPS53-213ENST00000572334 DESP17661 470 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 MPSTP25325 297 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 CD82P27701 267 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 ALDH4A1P30038 563 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 ARL4AP40617 200 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 GARSP41250 739 aaKnown RBP6.68□□□□□ -1.34
VPS53-213ENST00000572334 GPR3P46089 330 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 GPR1P46091 355 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 FASLGP48023 281 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 STC1P52823 247 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 CDH6P55285 790 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 TAS2R40P59535 323 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 DSC2Q02487 901 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 ILF3Q12906 894 aaKnown RBP eCLIP6.68□□□□□ -1.34
VPS53-213ENST00000572334 NFATC3Q12968 1075 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 DPYSL3Q14195 570 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 PIGHQ14442 188 aaPredicted RBP6.68□□□□□ -1.34
VPS53-213ENST00000572334 CLPPQ16740 277 aaPredicted RBP6.68□□□□□ -1.34
VPS53-213ENST00000572334 MAP9Q49MG5 647 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 MANEAQ5SRI9 462 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 ARMC12Q5T9G4 340 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 MARC1Q5VT66 337 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 DOK6Q6PKX4 331 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 ZNF765Q7L2R6 523 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 PIM3Q86V86 326 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 ZNF761Q86XN6 746 aaPredicted RBP6.68□□□□□ -1.34
VPS53-213ENST00000572334 SFRP1Q8N474 314 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 PQLC3Q8N755 202 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 OR4D9Q8NGE8 314 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 SLC37A2Q8TED4 501 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 JPH3Q8WXH2 748 aaPredicted RBP6.68□□□□□ -1.34
VPS53-213ENST00000572334 FATE1Q969F0 183 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 FAF2Q96CS3 445 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 AP2M1Q96CW1 435 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 EID2BQ96D98 161 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 TSGA13Q96PP4 275 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 LYSMD1Q96S90 227 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 TDRD1Q9BXT4 1180 aaKnown RBP6.68□□□□□ -1.34
VPS53-213ENST00000572334 MRPL47Q9HD33 250 aaKnown RBP6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms