RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 HOXB3P14651 431 aaPredicted RBP10.82□□□□□ -0.68
CLK3-226ENST00000569406 CD58P19256 250 aa10.82□□□□□ -0.68
CLK3-226ENST00000569406 CYP2A7P20853 494 aa10.82□□□□□ -0.68
CLK3-226ENST00000569406 HTR3AP46098 478 aa10.82□□□□□ -0.68
CLK3-226ENST00000569406 CCT3P49368 545 aaKnown RBP10.82□□□□□ -0.68
CLK3-226ENST00000569406 TPMTP51580 245 aa10.82□□□□□ -0.68
CLK3-226ENST00000569406 MRPS5P82675 430 aaKnown RBP10.82□□□□□ -0.68
CLK3-226ENST00000569406 MS4A2Q01362 244 aa10.82□□□□□ -0.68
CLK3-226ENST00000569406 BST2Q10589 180 aaKnown RBP10.82□□□□□ -0.68
CLK3-226ENST00000569406 EMC2Q15006 297 aa10.82□□□□□ -0.68
CLK3-226ENST00000569406 PLCL1Q15111 1095 aa10.82□□□□□ -0.68
CLK3-226ENST00000569406 RTP2Q5QGT7 225 aa10.82□□□□□ -0.68
CLK3-226ENST00000569406 ACAD10Q6JQN1 1059 aa10.82□□□□□ -0.68
CLK3-226ENST00000569406 MON1BQ7L1V2 547 aa10.82□□□□□ -0.68
CLK3-226ENST00000569406 PRSS42Q7Z5A4 293 aa10.82□□□□□ -0.68
CLK3-226ENST00000569406 TMEM130Q8N3G9 435 aa10.82□□□□□ -0.68
CLK3-226ENST00000569406 BANPQ8N9N5 519 aa10.82□□□□□ -0.68
CLK3-226ENST00000569406 OR5B17Q8NGF7 314 aa10.82□□□□□ -0.68
CLK3-226ENST00000569406 OR13F1Q8NGS4 319 aa10.82□□□□□ -0.68
CLK3-226ENST00000569406 DEDD2Q8WXF8 326 aa10.82□□□□□ -0.68
CLK3-226ENST00000569406 ZHX1-C8orf76Q96EF9 292 aa10.82□□□□□ -0.68
CLK3-226ENST00000569406 FAM167AQ96KS9 214 aa10.82□□□□□ -0.68
CLK3-226ENST00000569406 C9orf16Q9BUW7 83 aa10.82□□□□□ -0.68
CLK3-226ENST00000569406 PPA2Q9H2U2 334 aa10.82□□□□□ -0.68
CLK3-226ENST00000569406 ACAD9Q9H845 621 aa10.82□□□□□ -0.68
CLK3-226ENST00000569406 PRDM8Q9NQV8 689 aa10.82□□□□□ -0.68
CLK3-226ENST00000569406 SEPT9Q9UHD8 586 aaPredicted RBP10.82□□□□□ -0.68
CLK3-226ENST00000569406 ZSWIM8A7E2V4 1837 aa10.82□□□□□ -0.68
CLK3-226ENST00000569406 TCRBV5S1A1TA0A578 114 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 H3BMM5 538 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 ARIH2O95376 493 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 GGPS1O95749 300 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 PSAPP07602 524 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 ENO3P13929 434 aaPredicted RBP10.81□□□□□ -0.68
CLK3-226ENST00000569406 UBA1P22314 1058 aaKnown RBP10.81□□□□□ -0.68
CLK3-226ENST00000569406 MAN1A1P33908 653 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 GRSF1Q12849 480 aaKnown RBP eCLIP10.81□□□□□ -0.68
CLK3-226ENST00000569406 SMAD1Q15797 465 aaKnown RBP10.81□□□□□ -0.68
CLK3-226ENST00000569406 CATSPEREQ5SY80 951 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 ZNF425Q6IV72 752 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 LIPIQ6XZB0 460 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 LHPPQ9H008 270 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 OSGEPL1Q9H4B0 414 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 SCML1Q9UN30 329 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 MAGED2Q9UNF1 606 aaPredicted RBP10.81□□□□□ -0.68
CLK3-226ENST00000569406 CLUHO75153 1309 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 B4GAT1O43505 415 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 CYP2C8P10632 490 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 SFTPCP11686 197 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 SRCP12931 536 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 SERPINB10P48595 397 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 RELQ04864 619 aaPredicted RBP10.81□□□□□ -0.68
CLK3-226ENST00000569406 VGLL4Q14135 290 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 GRIK4Q16099 956 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 TTC39BQ5VTQ0 682 aaPredicted RBP10.81□□□□□ -0.68
CLK3-226ENST00000569406 C16orf46Q6P387 395 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 TMEM81Q6P7N7 255 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 BRAT1Q6PJG6 821 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 SLC2A14Q8TDB8 520 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 FBXL20Q96IG2 436 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 ST6GAL2Q96JF0 529 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 VRTNQ9H8Y1 702 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 GPN2Q9H9Y4 310 aaPredicted RBP10.81□□□□□ -0.68
CLK3-226ENST00000569406 ARNT2Q9HBZ2 717 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 RANGRFQ9HD47 186 aaPredicted RBP10.81□□□□□ -0.68
CLK3-226ENST00000569406 SMOXQ9NWM0 555 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 EIF3KQ9UBQ5 218 aaKnown RBP10.81□□□□□ -0.68
CLK3-226ENST00000569406 TRMT6Q9UJA5 497 aaKnown RBP10.81□□□□□ -0.68
CLK3-226ENST00000569406 TMPRSS11EQ9UL52 423 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 ACTL7AQ9Y615 435 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 RNF103-CHMP3A0A140T963 221 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 CCDC182A6NF36 153 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 SDR42E2A6NKP2 422 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 SGK1O00141 431 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 HNRNPDLO14979 420 aaKnown RBP10.81□□□□□ -0.68
CLK3-226ENST00000569406 BANF1O75531 89 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 UPK1BO75841 260 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 HEXBP07686 556 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 IL7P13232 177 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 CPB1P15086 417 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 HLA-FP30511 346 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 PPP5CP53041 499 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 CYP4F2P78329 520 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 CYP4F3Q08477 520 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 KLF1Q13351 362 aaPredicted RBP10.81□□□□□ -0.68
CLK3-226ENST00000569406 ARMC4Q5T2S8 1044 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 RBM20Q5T481 1227 aaKnown RBP10.81□□□□□ -0.68
CLK3-226ENST00000569406 TDRPQ86YL5 185 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 WDR49Q8IV35 697 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 MCOLN2Q8IZK6 566 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 FNDC5Q8NAU1 212 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 IL17RDQ8NFM7 739 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 CMASQ8NFW8 434 aaPredicted RBP10.81□□□□□ -0.68
CLK3-226ENST00000569406 ENKURQ8TC29 256 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 CPA5Q8WXQ8 436 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 ACSF2Q96CM8 615 aaPredicted RBP10.81□□□□□ -0.68
CLK3-226ENST00000569406 C11orf70Q9BRQ4 267 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 ENTPD7Q9NQZ7 604 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 PCDHB16Q9NRJ7 776 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 TCAF1Q9Y4C2 921 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms