RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 PABPC1LQ4VXU2 614 aaKnown RBP20.19■□□□□ 0.82
CLN3-230ENST00000568076 ZRANB3Q5FWF4 1079 aa20.19■□□□□ 0.82
CLN3-230ENST00000568076 GK5Q6ZS86 529 aa20.19■□□□□ 0.82
CLN3-230ENST00000568076 ITIH5Q86UX2 942 aa20.19■□□□□ 0.82
CLN3-230ENST00000568076 KIRREL3Q8IZU9 778 aa20.19■□□□□ 0.82
CLN3-230ENST00000568076 DCAF4L2Q8NA75 395 aa20.19■□□□□ 0.82
CLN3-230ENST00000568076 C3orf30Q96M34 536 aa20.19■□□□□ 0.82
CLN3-230ENST00000568076 PRPF19Q9UMS4 504 aaKnown RBP20.19■□□□□ 0.82
CLN3-230ENST00000568076 H7C0S8 307 aa20.18■□□□□ 0.82
CLN3-230ENST00000568076 CDC7O00311 574 aa20.18■□□□□ 0.82
CLN3-230ENST00000568076 NIPSNAP2O75323 286 aa20.18■□□□□ 0.82
CLN3-230ENST00000568076 BAG2O95816 211 aa20.18■□□□□ 0.82
CLN3-230ENST00000568076 GABRR2P28476 465 aa20.18■□□□□ 0.82
CLN3-230ENST00000568076 XIAPP98170 497 aa20.18■□□□□ 0.82
CLN3-230ENST00000568076 TSNQ15631 228 aaKnown RBP20.18■□□□□ 0.82
CLN3-230ENST00000568076 HS6ST3Q8IZP7 471 aa20.18■□□□□ 0.82
CLN3-230ENST00000568076 HIPK4Q8NE63 616 aa20.18■□□□□ 0.82
CLN3-230ENST00000568076 SLC26A7Q8TE54 656 aa20.18■□□□□ 0.82
CLN3-230ENST00000568076 JADE3Q92613 823 aa20.18■□□□□ 0.82
CLN3-230ENST00000568076 NPAS2Q99743 824 aa20.18■□□□□ 0.82
CLN3-230ENST00000568076 TM6SF2Q9BZW4 377 aa20.18■□□□□ 0.82
CLN3-230ENST00000568076 NDE1Q9NXR1 346 aa20.18■□□□□ 0.82
CLN3-230ENST00000568076 CLEC4EQ9ULY5 219 aa20.18■□□□□ 0.82
CLN3-230ENST00000568076 GBF1Q92538 1859 aa20.18■□□□□ 0.82
CLN3-230ENST00000568076 TYW5A2RUC4 315 aaKnown RBP20.17■□□□□ 0.82
CLN3-230ENST00000568076 UBDO15205 165 aa20.17■□□□□ 0.82
CLN3-230ENST00000568076 SMAD6O43541 496 aaKnown RBP20.17■□□□□ 0.82
CLN3-230ENST00000568076 TGM5O43548 720 aa20.17■□□□□ 0.82
CLN3-230ENST00000568076 TSPAN12O95859 305 aa20.17■□□□□ 0.82
CLN3-230ENST00000568076 PKMP14618 531 aaKnown RBP20.17■□□□□ 0.82
CLN3-230ENST00000568076 LARP4Q71RC2 724 aaKnown RBP eCLIP20.17■□□□□ 0.821e-6■□□□□ 8.2
CLN3-230ENST00000568076 MFN1Q8IWA4 741 aa20.17■□□□□ 0.82
CLN3-230ENST00000568076 PGAM4Q8N0Y7 254 aa20.17■□□□□ 0.82
CLN3-230ENST00000568076 SIDT2Q8NBJ9 832 aaKnown RBP20.17■□□□□ 0.82
CLN3-230ENST00000568076 OR6K2Q8NGY2 324 aa20.17■□□□□ 0.82
CLN3-230ENST00000568076 STAG3L4Q8TBR4 150 aa20.17■□□□□ 0.82
CLN3-230ENST00000568076 CDRT15Q96T59 188 aa20.17■□□□□ 0.82
CLN3-230ENST00000568076 LRRC3Q9BY71 257 aa20.17■□□□□ 0.82
CLN3-230ENST00000568076 IL17CQ9P0M4 197 aa20.17■□□□□ 0.82
CLN3-230ENST00000568076 STK39Q9UEW8 545 aa20.17■□□□□ 0.82
CLN3-230ENST00000568076 RNF112Q9ULX5 631 aa20.17■□□□□ 0.82
CLN3-230ENST00000568076 ZNF711Q9Y462 761 aa20.17■□□□□ 0.82
CLN3-230ENST00000568076 ATP6AP2A0A1C7CYW4 349 aa20.17■□□□□ 0.82
CLN3-230ENST00000568076 ATP6AP2O75787 350 aa20.17■□□□□ 0.82
CLN3-230ENST00000568076 CNPP09543 421 aaKnown RBP20.17■□□□□ 0.82
CLN3-230ENST00000568076 ALPIP09923 528 aa20.17■□□□□ 0.82
CLN3-230ENST00000568076 ENO3P13929 434 aaPredicted RBP20.17■□□□□ 0.82
CLN3-230ENST00000568076 GFAPP14136 432 aa20.17■□□□□ 0.82
CLN3-230ENST00000568076 CTPS1P17812 591 aa20.17■□□□□ 0.82
CLN3-230ENST00000568076 TTPAP49638 278 aa20.17■□□□□ 0.82
CLN3-230ENST00000568076 THOP1P52888 689 aa20.17■□□□□ 0.82
CLN3-230ENST00000568076 FOXA1P55317 472 aa20.17■□□□□ 0.82
CLN3-230ENST00000568076 RAD51Q06609 339 aa20.17■□□□□ 0.82
CLN3-230ENST00000568076 ZRSR2Q15696 482 aaKnown RBP20.17■□□□□ 0.82
CLN3-230ENST00000568076 PIGGQ5H8A4 983 aa20.17■□□□□ 0.82
CLN3-230ENST00000568076 ADGRG6Q86SQ4 1221 aa20.17■□□□□ 0.82
CLN3-230ENST00000568076 TMC8Q8IU68 726 aa20.17■□□□□ 0.82
CLN3-230ENST00000568076 CAMK1DQ8IU85 385 aa20.17■□□□□ 0.82
CLN3-230ENST00000568076 CLYBLQ8N0X4 340 aa20.17■□□□□ 0.82
CLN3-230ENST00000568076 PPFIBP2Q8ND30 876 aa20.17■□□□□ 0.82
CLN3-230ENST00000568076 EFCAB1Q9HAE3 211 aa20.17■□□□□ 0.82
CLN3-230ENST00000568076 PLK2Q9NYY3 685 aa20.17■□□□□ 0.82
CLN3-230ENST00000568076 HACD3Q9P035 362 aa20.17■□□□□ 0.82
CLN3-230ENST00000568076 MAFFQ9ULX9 164 aa20.17■□□□□ 0.82
CLN3-230ENST00000568076 DNAJC15Q9Y5T4 150 aa20.17■□□□□ 0.82
CLN3-230ENST00000568076 A0A1B0GTL3 188 aa20.16■□□□□ 0.82
CLN3-230ENST00000568076 TRIM43BA6NCK2 446 aa20.16■□□□□ 0.82
CLN3-230ENST00000568076 NPEPPSL1A6NEC2 478 aa20.16■□□□□ 0.82
CLN3-230ENST00000568076 SUPT3HB4E1H0 165 aa20.16■□□□□ 0.82
CLN3-230ENST00000568076 MAP3K7O43318 606 aa20.16■□□□□ 0.82
CLN3-230ENST00000568076 CLASP2O75122 1294 aaKnown RBP20.16■□□□□ 0.82
CLN3-230ENST00000568076 SUPT3HO75486 399 aa20.16■□□□□ 0.82
CLN3-230ENST00000568076 ECI2O75521 394 aa20.16■□□□□ 0.82
CLN3-230ENST00000568076 ACRP10323 421 aa20.16■□□□□ 0.82
CLN3-230ENST00000568076 ATP6V0D1P61421 351 aa20.16■□□□□ 0.82
CLN3-230ENST00000568076 PTK2BQ14289 1009 aa20.16■□□□□ 0.82
CLN3-230ENST00000568076 SQLEQ14534 574 aa20.16■□□□□ 0.82
CLN3-230ENST00000568076 ZNF423Q2M1K9 1284 aa20.16■□□□□ 0.82
CLN3-230ENST00000568076 FBXO48Q5FWF7 155 aa20.16■□□□□ 0.82
CLN3-230ENST00000568076 BNC2Q6ZN30 1099 aaPredicted RBP20.16■□□□□ 0.82
CLN3-230ENST00000568076 LYSMD3Q7Z3D4 306 aa20.16■□□□□ 0.82
CLN3-230ENST00000568076 RAB44Q7Z6P3 723 aaPredicted RBP20.16■□□□□ 0.82
CLN3-230ENST00000568076 DDI1Q8WTU0 396 aa20.16■□□□□ 0.82
CLN3-230ENST00000568076 PIH1D2Q8WWB5 315 aa20.16■□□□□ 0.82
CLN3-230ENST00000568076 FUBP1Q96AE4 644 aaKnown RBP20.16■□□□□ 0.82
CLN3-230ENST00000568076 TRIM43Q96BQ3 446 aaPredicted RBP20.16■□□□□ 0.82
CLN3-230ENST00000568076 C19orf60Q96EN9 201 aa20.16■□□□□ 0.82
CLN3-230ENST00000568076 ZBP1Q9H171 429 aa20.16■□□□□ 0.82
CLN3-230ENST00000568076 WDR41Q9HAD4 459 aa20.16■□□□□ 0.82
CLN3-230ENST00000568076 FBRSL1Q9HCM7 1045 aaKnown RBP20.16■□□□□ 0.82
CLN3-230ENST00000568076 MID1IP1Q9NPA3 183 aa20.16■□□□□ 0.82
CLN3-230ENST00000568076 VPS9D1Q9Y2B5 631 aa20.16■□□□□ 0.82
CLN3-230ENST00000568076 STX16-NPEPL1H3BU86 382 aa20.15■□□□□ 0.82
CLN3-230ENST00000568076 CFLARO15519 480 aa20.15■□□□□ 0.82
CLN3-230ENST00000568076 PGLSO95336 258 aa20.15■□□□□ 0.82
CLN3-230ENST00000568076 FGF4P08620 206 aa20.15■□□□□ 0.82
CLN3-230ENST00000568076 EEF1DP29692 281 aaKnown RBP20.15■□□□□ 0.82
CLN3-230ENST00000568076 CA8P35219 290 aa20.15■□□□□ 0.82
CLN3-230ENST00000568076 CLCN4P51793 760 aa20.15■□□□□ 0.82
CLN3-230ENST00000568076 CEACAM7Q14002 265 aa20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms