RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 PYCR3Q53H96 274 aa15.99■□□□□ 0.15
CLN3-229ENST00000567963 H2AFVQ71UI9 128 aa15.99■□□□□ 0.15
CLN3-229ENST00000567963 TRIM74Q86UV6 250 aa15.99■□□□□ 0.15
CLN3-229ENST00000567963 RAVER1Q8IY67 606 aaKnown RBP15.99■□□□□ 0.15
CLN3-229ENST00000567963 NRSN1Q8IZ57 195 aa15.99■□□□□ 0.15
CLN3-229ENST00000567963 PQLC3Q8N755 202 aa15.99■□□□□ 0.15
CLN3-229ENST00000567963 EXD1Q8NHP7 514 aa15.99■□□□□ 0.15
CLN3-229ENST00000567963 COX14Q96I36 57 aa15.99■□□□□ 0.15
CLN3-229ENST00000567963 OR2M4Q96R27 311 aa15.99■□□□□ 0.15
CLN3-229ENST00000567963 NUDT22Q9BRQ3 303 aa15.99■□□□□ 0.15
CLN3-229ENST00000567963 SEPT10Q9P0V9 454 aa15.99■□□□□ 0.15
CLN3-229ENST00000567963 DNPEPQ9ULA0 475 aa15.99■□□□□ 0.15
CLN3-229ENST00000567963 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.99■□□□□ 0.15
CLN3-229ENST00000567963 IGHV5-10-1A0A0J9YXX1 117 aa15.98■□□□□ 0.15
CLN3-229ENST00000567963 C9orf172C9J069 976 aa15.98■□□□□ 0.15
CLN3-229ENST00000567963 HLA-DQB2P05538 268 aa15.98■□□□□ 0.15
CLN3-229ENST00000567963 MX2P20592 715 aa15.98■□□□□ 0.15
CLN3-229ENST00000567963 CA4P22748 312 aa15.98■□□□□ 0.15
CLN3-229ENST00000567963 RPL26P61254 145 aaKnown RBP15.98■□□□□ 0.15
CLN3-229ENST00000567963 GBE1Q04446 702 aa15.98■□□□□ 0.15
CLN3-229ENST00000567963 SRSF6Q13247 344 aaKnown RBP15.98■□□□□ 0.15
CLN3-229ENST00000567963 SQSTM1Q13501 440 aa15.98■□□□□ 0.15
CLN3-229ENST00000567963 SLC18A3Q16572 532 aa15.98■□□□□ 0.15
CLN3-229ENST00000567963 RCBTB1Q8NDN9 531 aa15.98■□□□□ 0.15
CLN3-229ENST00000567963 CTNNBL1Q8WYA6 563 aaPredicted RBP15.98■□□□□ 0.15
CLN3-229ENST00000567963 HDAC11Q96DB2 347 aa15.98■□□□□ 0.15
CLN3-229ENST00000567963 LYSMD1Q96S90 227 aa15.98■□□□□ 0.15
CLN3-229ENST00000567963 RIOK2Q9BVS4 552 aaKnown RBP15.98■□□□□ 0.15
CLN3-229ENST00000567963 PACSIN1Q9BY11 444 aa15.98■□□□□ 0.15
CLN3-229ENST00000567963 B3GNT4Q9C0J1 378 aa15.98■□□□□ 0.15
CLN3-229ENST00000567963 PCDH9Q9HC56 1237 aa15.98■□□□□ 0.15
CLN3-229ENST00000567963 FOXJ2Q9P0K8 574 aa15.98■□□□□ 0.15
CLN3-229ENST00000567963 AKAP7Q9P0M2 348 aaPredicted RBP15.98■□□□□ 0.15
CLN3-229ENST00000567963 LCMT1Q9UIC8 334 aa15.98■□□□□ 0.15
CLN3-229ENST00000567963 RPL26L1Q9UNX3 145 aaKnown RBP15.98■□□□□ 0.15
CLN3-229ENST00000567963 ZFC3H1O60293 1989 aaKnown RBP15.98■□□□□ 0.15
CLN3-229ENST00000567963 AHCTF1Q8WYP5 2266 aa15.98■□□□□ 0.15
CLN3-229ENST00000567963 HGSO14964 777 aaPredicted RBP15.97■□□□□ 0.15
CLN3-229ENST00000567963 KDELR1P24390 212 aa15.97■□□□□ 0.15
CLN3-229ENST00000567963 LIMK2P53671 638 aa15.97■□□□□ 0.15
CLN3-229ENST00000567963 LRP8Q14114 963 aa15.97■□□□□ 0.15
CLN3-229ENST00000567963 ASTE1Q2TB18 679 aaPredicted RBP15.97■□□□□ 0.15
CLN3-229ENST00000567963 TMEM164Q5U3C3 297 aa15.97■□□□□ 0.15
CLN3-229ENST00000567963 NKAIN2Q5VXU1 208 aa15.97■□□□□ 0.15
CLN3-229ENST00000567963 MARK2Q7KZI7 788 aaKnown RBP15.97■□□□□ 0.15
CLN3-229ENST00000567963 ZFAND4Q86XD8 727 aa15.97■□□□□ 0.15
CLN3-229ENST00000567963 DTX1Q86Y01 620 aa15.97■□□□□ 0.15
CLN3-229ENST00000567963 CCNYQ8ND76 341 aa15.97■□□□□ 0.15
CLN3-229ENST00000567963 RAPGEF5Q92565 580 aa15.97■□□□□ 0.15
CLN3-229ENST00000567963 MED8Q96G25 268 aa15.97■□□□□ 0.15
CLN3-229ENST00000567963 DTLQ9NZJ0 730 aa15.97■□□□□ 0.15
CLN3-229ENST00000567963 COL6A6A6NMZ7 2263 aa15.97■□□□□ 0.15
CLN3-229ENST00000567963 ZNF462Q96JM2 2506 aa15.97■□□□□ 0.15
CLN3-229ENST00000567963 IGHV1OR21-1A0A087WYE8 117 aa15.97■□□□□ 0.15
CLN3-229ENST00000567963 ANKRD66B4E2M5 251 aa15.97■□□□□ 0.15
CLN3-229ENST00000567963 INPP4BO15327 924 aa15.97■□□□□ 0.15
CLN3-229ENST00000567963 MMP2P08253 660 aa15.97■□□□□ 0.15
CLN3-229ENST00000567963 CCL4P13236 92 aa15.97■□□□□ 0.15
CLN3-229ENST00000567963 CD82P27701 267 aa15.97■□□□□ 0.15
CLN3-229ENST00000567963 MAN1A1P33908 653 aa15.97■□□□□ 0.15
CLN3-229ENST00000567963 ZFYVE27Q5T4F4 411 aa15.97■□□□□ 0.15
CLN3-229ENST00000567963 GALNT13Q8IUC8 556 aa15.97■□□□□ 0.15
CLN3-229ENST00000567963 CCDC13Q8IYE1 715 aa15.97■□□□□ 0.15
CLN3-229ENST00000567963 LPCAT1Q8NF37 534 aa15.97■□□□□ 0.15
CLN3-229ENST00000567963 OR4D9Q8NGE8 314 aa15.97■□□□□ 0.15
CLN3-229ENST00000567963 SGF29Q96ES7 293 aa15.97■□□□□ 0.15
CLN3-229ENST00000567963 CCDC74BQ96LY2 380 aa15.97■□□□□ 0.15
CLN3-229ENST00000567963 RNF157Q96PX1 679 aa15.97■□□□□ 0.15
CLN3-229ENST00000567963 WDR24Q96S15 920 aa15.97■□□□□ 0.15
CLN3-229ENST00000567963 XPO4Q9C0E2 1151 aaKnown RBP15.97■□□□□ 0.15
CLN3-229ENST00000567963 CNOT6Q9ULM6 557 aaKnown RBP15.97■□□□□ 0.15
CLN3-229ENST00000567963 PCDHB11Q9Y5F2 797 aa15.97■□□□□ 0.15
CLN3-229ENST00000567963 PIEZO2Q9H5I5 2752 aa15.96■□□□□ 0.15
CLN3-229ENST00000567963 C1orf232A0A0U1RR37 186 aa15.96■□□□□ 0.14
CLN3-229ENST00000567963 B8ZZF3 427 aa15.96■□□□□ 0.14
CLN3-229ENST00000567963 DNAJC6O75061 913 aa15.96■□□□□ 0.14
CLN3-229ENST00000567963 ASMTLO95671 621 aa15.96■□□□□ 0.14
CLN3-229ENST00000567963 JCHAINP01591 159 aa15.96■□□□□ 0.14
CLN3-229ENST00000567963 ATP1A1P05023 1023 aaKnown RBP15.96■□□□□ 0.14
CLN3-229ENST00000567963 FGF3P11487 239 aaPredicted RBP15.96■□□□□ 0.14
CLN3-229ENST00000567963 CD86P42081 329 aa15.96■□□□□ 0.14
CLN3-229ENST00000567963 FASLGP48023 281 aa15.96■□□□□ 0.14
CLN3-229ENST00000567963 SPINT3P49223 89 aa15.96■□□□□ 0.14
CLN3-229ENST00000567963 PPIDQ08752 370 aaKnown RBP15.96■□□□□ 0.14
CLN3-229ENST00000567963 TRA2AQ13595 282 aaKnown RBP eCLIP15.96■□□□□ 0.14
CLN3-229ENST00000567963 MANEAQ5SRI9 462 aa15.96■□□□□ 0.14
CLN3-229ENST00000567963 HENMT1Q5T8I9 393 aaKnown RBP15.96■□□□□ 0.14
CLN3-229ENST00000567963 SFRP1Q8N474 314 aa15.96■□□□□ 0.14
CLN3-229ENST00000567963 OR8K1Q8NGG5 319 aa15.96■□□□□ 0.14
CLN3-229ENST00000567963 MLPHQ9BV36 600 aaPredicted RBP15.96■□□□□ 0.14
CLN3-229ENST00000567963 KCNK4Q9NYG8 393 aa15.96■□□□□ 0.14
CLN3-229ENST00000567963 VPS18Q9P253 973 aa15.96■□□□□ 0.14
CLN3-229ENST00000567963 ZNHIT2Q9UHR6 403 aa15.96■□□□□ 0.14
CLN3-229ENST00000567963 PCYT1BQ9Y5K3 369 aaPredicted RBP15.96■□□□□ 0.14
CLN3-229ENST00000567963 OAS3Q9Y6K5 1087 aaKnown RBP15.96■□□□□ 0.14
CLN3-229ENST00000567963 BOD1L1Q8NFC6 3051 aa15.96■□□□□ 0.14
CLN3-229ENST00000567963 TRBV23OR9-2A0A075B6M9 112 aa15.95■□□□□ 0.14
CLN3-229ENST00000567963 IQCJ-SCHIP1C9J366 451 aaPredicted RBP15.95■□□□□ 0.14
CLN3-229ENST00000567963 KCNK1O00180 336 aa15.95■□□□□ 0.14
CLN3-229ENST00000567963 ZIC2O95409 532 aaPredicted RBP15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms