RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 CTPS1P17812 591 aa13.4□□□□□ -0.26
CLK3-218ENST00000566926 IVDP26440 423 aa13.4□□□□□ -0.26
CLK3-218ENST00000566926 RBL1P28749 1068 aa13.4□□□□□ -0.26
CLK3-218ENST00000566926 HNF1BP35680 557 aa13.4□□□□□ -0.26
CLK3-218ENST00000566926 TRIM23P36406 574 aa13.4□□□□□ -0.26
CLK3-218ENST00000566926 FDFT1P37268 417 aa13.4□□□□□ -0.26
CLK3-218ENST00000566926 TNNT3P45378 269 aaPredicted RBP13.4□□□□□ -0.26
CLK3-218ENST00000566926 CARSP49589 748 aaKnown RBP13.4□□□□□ -0.26
CLK3-218ENST00000566926 DUSP3P51452 185 aaPredicted RBP13.4□□□□□ -0.26
CLK3-218ENST00000566926 KIAA1024LP59773 190 aa13.4□□□□□ -0.26
CLK3-218ENST00000566926 SKOR1P84550 965 aa13.4□□□□□ -0.26
CLK3-218ENST00000566926 DAB2P98082 770 aa13.4□□□□□ -0.26
CLK3-218ENST00000566926 SLMAPQ14BN4 828 aa13.4□□□□□ -0.26
CLK3-218ENST00000566926 DENND2CQ68D51 928 aa13.4□□□□□ -0.26
CLK3-218ENST00000566926 ITPRIPL1Q6GPH6 555 aa13.4□□□□□ -0.26
CLK3-218ENST00000566926 PNCKQ6P2M8 343 aa13.4□□□□□ -0.26
CLK3-218ENST00000566926 ENPP7Q6UWV6 458 aa13.4□□□□□ -0.26
CLK3-218ENST00000566926 PPP1R21Q6ZMI0 780 aa13.4□□□□□ -0.26
CLK3-218ENST00000566926 ARHGEF18Q6ZSZ5 1173 aa13.4□□□□□ -0.26
CLK3-218ENST00000566926 PHACTR4Q8IZ21 702 aa13.4□□□□□ -0.26
CLK3-218ENST00000566926 CBARPQ8N350 705 aaPredicted RBP13.4□□□□□ -0.26
CLK3-218ENST00000566926 GALNT15Q8N3T1 639 aa13.4□□□□□ -0.26
CLK3-218ENST00000566926 FSTL5Q8N475 847 aaPredicted RBP13.4□□□□□ -0.26
CLK3-218ENST00000566926 CHCHD4Q8N4Q1 142 aa13.4□□□□□ -0.26
CLK3-218ENST00000566926 ZNF548Q8NEK5 533 aaPredicted RBP13.4□□□□□ -0.26
CLK3-218ENST00000566926 LPCAT1Q8NF37 534 aa13.4□□□□□ -0.26
CLK3-218ENST00000566926 GLMNQ92990 594 aa13.4□□□□□ -0.26
CLK3-218ENST00000566926 DTD2Q96FN9 168 aa13.4□□□□□ -0.26
CLK3-218ENST00000566926 IMP4Q96G21 291 aaKnown RBP13.4□□□□□ -0.26
CLK3-218ENST00000566926 PKNOX2Q96KN3 472 aa13.4□□□□□ -0.26
CLK3-218ENST00000566926 TEKT5Q96M29 485 aa13.4□□□□□ -0.26
CLK3-218ENST00000566926 WDR92Q96MX6 357 aa13.4□□□□□ -0.26
CLK3-218ENST00000566926 LYSMD1Q96S90 227 aa13.4□□□□□ -0.26
CLK3-218ENST00000566926 SRPK1Q96SB4 655 aaKnown RBP13.4□□□□□ -0.26
CLK3-218ENST00000566926 MLPHQ9BV36 600 aaPredicted RBP13.4□□□□□ -0.26
CLK3-218ENST00000566926 TRIM31Q9BZY9 425 aa13.4□□□□□ -0.26
CLK3-218ENST00000566926 GLOD4Q9HC38 313 aa13.4□□□□□ -0.26
CLK3-218ENST00000566926 PHPT1Q9NRX4 125 aaPredicted RBP13.4□□□□□ -0.26
CLK3-218ENST00000566926 TOR4AQ9NXH8 423 aa13.4□□□□□ -0.26
CLK3-218ENST00000566926 KLQ9UEF7 1012 aa13.4□□□□□ -0.26
CLK3-218ENST00000566926 ANAPC5Q9UJX4 755 aa13.4□□□□□ -0.26
CLK3-218ENST00000566926 SNX24Q9Y343 169 aa13.4□□□□□ -0.26
CLK3-218ENST00000566926 ACACBO00763 2458 aa13.4□□□□□ -0.26
CLK3-218ENST00000566926 MYLKQ15746 1914 aa13.4□□□□□ -0.26
CLK3-218ENST00000566926 PLXNB3Q9ULL4 1909 aa13.4□□□□□ -0.26
CLK3-218ENST00000566926 GOLGA6CA6NDK9 693 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 GOLGA6BA6NDN3 693 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 ANKRD66B4E2M5 251 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 TNFRSF10CO14798 259 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 FFAR2O15552 330 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 SIGLEC6O43699 453 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 HYAL3O43820 417 aaPredicted RBP13.39□□□□□ -0.27
CLK3-218ENST00000566926 RFPL3O75679 317 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 DKK1O94907 266 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 PRLP01236 227 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 TNFP01375 233 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 MMP2P08253 660 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 ALPIP09923 528 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 GOLGA6DP0CG33 693 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 CTSEP14091 401 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 LHCGRP22888 699 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 PTPN3P26045 913 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 TEAD1P28347 426 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 HK3P52790 923 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 PLTPP55058 493 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 GDF10P55107 478 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 CDK16Q00536 496 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 DPTQ07507 201 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 ELOCQ15369 112 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 PROX2Q3B8N5 592 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 TPRG1LQ5T0D9 272 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 LRRC66Q68CR7 880 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 ZCCHC8Q6NZY4 707 aaKnown RBP13.39□□□□□ -0.27
CLK3-218ENST00000566926 CRTC1Q6UUV9 634 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 ZNF765Q7L2R6 523 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 NLRP8Q86W28 1048 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 PPIL6Q8IXY8 311 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 NRSN1Q8IZ57 195 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 PNPLA1Q8N8W4 532 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 FAM181AQ8N9Y4 354 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 LMX1AQ8TE12 382 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 SCG3Q8WXD2 468 aaKnown RBP13.39□□□□□ -0.27
CLK3-218ENST00000566926 RBM15Q96T37 977 aaKnown RBP eCLIP13.39□□□□□ -0.27
CLK3-218ENST00000566926 CEP41Q9BYV8 373 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 WDR26Q9H7D7 661 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 ZDHHC18Q9NUE0 388 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 UCKL1Q9NWZ5 548 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 GOLGA6AQ9NYA3 693 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 GRHL1Q9NZI5 618 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 KLHL8Q9P2G9 620 aaPredicted RBP13.39□□□□□ -0.27
CLK3-218ENST00000566926 DOLKQ9UPQ8 538 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 WASF3Q9UPY6 502 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 MSRB2Q9Y3D2 182 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 OR1A2Q9Y585 309 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 ASXL3Q9C0F0 2248 aa13.39□□□□□ -0.27
CLK3-218ENST00000566926 RP1P56715 2156 aa13.38□□□□□ -0.27
CLK3-218ENST00000566926 FAM221BA6H8Z2 402 aa13.38□□□□□ -0.27
CLK3-218ENST00000566926 ERI2A8K979 691 aaKnown RBP13.38□□□□□ -0.27
CLK3-218ENST00000566926 K7ESM1 405 aa13.38□□□□□ -0.27
CLK3-218ENST00000566926 TRIM38O00635 465 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms